Wall clock time and date at job start Mon Mar 30 2020 00:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 5 5 C 1.36931 * 119.99788 * 274.99780 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31617 * 119.99873 * 180.27450 * 7 5 4 9 9 Si 1.86800 * 120.00209 * 0.27770 * 7 5 4 10 10 H 1.48498 * 109.47118 * 89.99559 * 9 7 5 11 11 H 1.48499 * 109.47134 * 210.00079 * 9 7 5 12 12 H 1.48507 * 109.46904 * 329.99901 * 9 7 5 13 13 C 1.50696 * 109.47149 * 239.99505 * 2 1 3 14 14 N 1.29025 * 124.91821 * 105.00299 * 13 2 1 15 15 C 1.31775 * 117.13122 * 179.97438 * 14 13 2 16 16 C 1.50697 * 122.75349 * 180.02562 * 15 14 13 17 17 C 1.53005 * 109.47115 * 185.00163 * 16 15 14 18 18 C 1.53003 * 109.47398 * 305.00082 * 16 15 14 19 19 C 1.52996 * 109.47086 * 65.00073 * 16 15 14 20 20 C 1.33645 * 114.49954 * 0.02562 * 15 14 13 21 21 S 1.70979 * 124.92040 * 284.70270 * 13 2 1 22 22 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 23 23 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 24 24 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99792 * 94.99575 * 4 2 1 26 26 H 0.97000 * 120.00553 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.47117 * 60.00094 * 17 16 15 28 28 H 1.09000 * 109.46914 * 179.97438 * 17 16 15 29 29 H 1.09000 * 109.47382 * 299.99698 * 17 16 15 30 30 H 1.09002 * 109.46539 * 59.99748 * 18 16 15 31 31 H 1.08998 * 109.47230 * 180.02562 * 18 16 15 32 32 H 1.08998 * 109.46917 * 300.00535 * 18 16 15 33 33 H 1.09000 * 109.47183 * 60.00442 * 19 16 15 34 34 H 1.09004 * 109.47339 * 179.97438 * 19 16 15 35 35 H 1.08996 * 109.47106 * 300.00067 * 19 16 15 36 36 H 1.07997 * 126.03877 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6062 -0.6633 3.5106 8 7 2.7268 -0.0080 4.6457 9 14 3.0504 -2.4758 3.4268 10 1 4.4848 -2.6179 3.0695 11 1 2.8044 -3.1073 4.7481 12 1 2.2151 -3.1430 2.3961 13 6 2.0324 -0.7105 -1.2304 14 7 2.5368 -0.1281 -2.2653 15 6 2.9289 -0.9007 -3.2582 16 6 3.5355 -0.3552 -4.5252 17 6 3.7626 -1.4992 -5.5156 18 6 2.5865 0.6735 -5.1433 19 6 4.8732 0.3138 -4.2033 20 6 2.7445 -2.2078 -3.0494 21 16 2.0232 -2.4056 -1.4541 22 1 -0.3633 0.5139 0.8898 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 2.2489 -1.6318 1.1527 26 1 3.0466 -0.4660 5.4386 27 1 2.8095 -1.9758 -5.7449 28 1 4.2009 -1.1045 -6.4322 29 1 4.4387 -2.2321 -5.0754 30 1 2.4247 1.4884 -4.4377 31 1 3.0250 1.0677 -6.0600 32 1 1.6334 0.1969 -5.3726 33 1 5.5494 -0.4191 -3.7631 34 1 5.3122 0.7080 -5.1199 35 1 4.7114 1.1287 -3.4978 36 1 2.9970 -3.0027 -3.7355 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184473011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:47 Heat of formation + Delta-G solvation = 41.776368 kcal Electronic energy + Delta-G solvation = -16799.142679 eV Core-core repulsion = 14217.115138 eV Total energy + Delta-G solvation = -2582.027541 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -40.08631 -36.69532 -35.24684 -32.12076 -29.86383 -28.86461 -27.25255 -27.24063 -25.09648 -23.65643 -21.61998 -20.31447 -18.63978 -17.96049 -16.91007 -15.67411 -14.90495 -14.66848 -14.48449 -13.88811 -13.81563 -13.59037 -12.83321 -12.64604 -12.57833 -12.28578 -12.20967 -12.03346 -11.73331 -11.69091 -11.03804 -11.02558 -10.98668 -10.89421 -10.87907 -10.61628 -10.20350 -9.67077 -9.27974 -9.16220 -9.01799 -8.46078 -7.42783 -5.84074 -3.22155 0.99905 1.65932 2.07916 3.04427 3.33552 3.36995 3.41580 4.16345 4.53103 4.74380 4.87985 4.91018 5.27449 5.29258 5.37447 5.47268 5.48104 5.57234 5.64403 5.70315 5.79719 5.88771 5.93127 5.99383 6.00598 6.05341 6.28768 6.29546 6.32872 6.42810 6.60441 6.81737 7.86785 8.06573 8.32973 9.08172 9.80733 9.97690 11.33366 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.030378 B = 0.005876 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.510469 B = 4763.838659 C = 4916.284582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.247 3.753 3 H 0.088 0.912 4 N -0.743 5.743 5 C -0.248 4.248 6 H 0.096 0.904 7 C 0.012 3.988 8 N -0.927 5.927 9 Si 0.875 3.125 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.078 3.922 14 N -0.472 5.472 15 C 0.083 3.917 16 C 0.008 3.992 17 C -0.143 4.143 18 C -0.134 4.134 19 C -0.136 4.136 20 C -0.280 4.280 21 S 0.108 5.892 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.361 0.639 26 H 0.261 0.739 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 -3.811 -19.895 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.106 0.894 4 N -0.387 5.387 5 C -0.377 4.377 6 H 0.114 0.886 7 C -0.184 4.184 8 N -0.574 5.574 9 Si 0.704 3.296 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.201 4.201 14 N -0.186 5.186 15 C -0.049 4.049 16 C 0.005 3.995 17 C -0.200 4.200 18 C -0.191 4.191 19 C -0.194 4.194 20 C -0.420 4.420 21 S 0.364 5.636 22 H 0.092 0.908 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.195 0.805 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.491 -3.925 -19.049 19.455 hybrid contribution 0.754 -1.163 -0.632 1.523 sum 0.264 -5.088 -19.680 20.329 Atomic orbital electron populations 1.22415 0.96469 1.01564 1.01599 1.18831 0.92568 0.95586 0.79578 0.89445 1.42867 1.80116 1.09139 1.06574 1.19021 1.37937 0.95790 0.84976 0.88607 1.24623 1.00904 0.97427 0.95458 1.69684 1.52012 1.35610 1.00123 0.86688 0.78804 0.86884 0.77178 1.20807 1.21314 1.20048 1.27944 0.99396 0.93831 0.98950 1.66028 1.13654 1.38447 1.00484 1.20134 1.00229 0.88721 0.95859 1.19094 0.95396 0.95530 0.89445 1.21951 1.01838 0.97759 0.98477 1.21793 0.98348 0.98704 1.00296 1.21819 0.95019 1.00924 1.01589 1.26779 1.13163 1.00821 1.01195 1.84107 1.57285 1.10458 1.11767 0.90827 0.93422 0.93222 0.80509 0.92849 0.92325 0.91939 0.92306 0.91449 0.92496 0.92945 0.92808 0.92358 0.91569 0.81101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.47 37.16 0.35 -2.47 16 2 C 0.25 4.97 3.40 -69.08 -0.23 4.74 16 3 H 0.09 1.84 8.08 -51.93 -0.42 1.42 16 4 N -0.74 -17.68 4.91 -54.55 -0.27 -17.95 16 5 C -0.25 -6.89 10.41 -15.06 -0.16 -7.05 16 6 H 0.10 2.82 8.06 -52.49 -0.42 2.39 16 7 C 0.01 0.36 5.50 -17.43 -0.10 0.27 16 8 N -0.93 -28.73 13.97 55.49 0.78 -27.95 16 9 Si 0.87 21.94 27.74 -169.99 -4.72 17.23 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.48 6.51 56.52 0.37 -6.11 16 13 C 0.08 1.44 6.30 -13.46 -0.08 1.35 16 14 N -0.47 -8.31 10.34 -8.06 -0.08 -8.39 16 15 C 0.08 1.25 5.29 -84.23 -0.45 0.80 16 16 C 0.01 0.10 0.98 -155.66 -0.15 -0.05 16 17 C -0.14 -1.31 7.27 37.16 0.27 -1.04 16 18 C -0.13 -1.47 8.38 37.16 0.31 -1.16 16 19 C -0.14 -1.58 8.46 37.16 0.31 -1.26 16 20 C -0.28 -3.94 10.13 29.12 0.30 -3.64 16 21 S 0.11 1.75 22.26 -107.50 -2.39 -0.64 16 22 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.36 8.51 4.83 -40.82 -0.20 8.32 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 27 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.52 7.53 -51.93 -0.39 0.13 16 30 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.17 1.90 6.78 -52.49 -0.36 1.54 16 LS Contribution 308.41 15.07 4.65 4.65 Total: -1.00 -30.45 308.41 -7.26 -37.71 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.59 Total: 4.86 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 0.37 Total: -9.50 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.42 Total: -54.30 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.72 Total: 17.23 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.39 Total: -0.64 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.45 -7.26 -37.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184473011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.486 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.14 seconds