Wall clock time and date at job start Mon Mar 30 2020 00:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 5 5 C 1.36931 * 119.99788 * 274.99780 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31617 * 119.99873 * 180.27450 * 7 5 4 9 9 Si 1.86800 * 120.00209 * 0.27770 * 7 5 4 10 10 H 1.48498 * 109.47118 * 89.99559 * 9 7 5 11 11 H 1.48499 * 109.47134 * 210.00079 * 9 7 5 12 12 H 1.48507 * 109.46904 * 329.99901 * 9 7 5 13 13 C 1.50696 * 109.47149 * 239.99505 * 2 1 3 14 14 N 1.29025 * 124.91821 * 105.00299 * 13 2 1 15 15 C 1.31775 * 117.13122 * 179.97438 * 14 13 2 16 16 C 1.50697 * 122.75349 * 180.02562 * 15 14 13 17 17 C 1.53005 * 109.47115 * 185.00163 * 16 15 14 18 18 C 1.53003 * 109.47398 * 305.00082 * 16 15 14 19 19 C 1.52996 * 109.47086 * 65.00073 * 16 15 14 20 20 C 1.33645 * 114.49954 * 0.02562 * 15 14 13 21 21 S 1.70979 * 124.92040 * 284.70270 * 13 2 1 22 22 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 23 23 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 24 24 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99792 * 94.99575 * 4 2 1 26 26 H 0.97000 * 120.00553 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.47117 * 60.00094 * 17 16 15 28 28 H 1.09000 * 109.46914 * 179.97438 * 17 16 15 29 29 H 1.09000 * 109.47382 * 299.99698 * 17 16 15 30 30 H 1.09002 * 109.46539 * 59.99748 * 18 16 15 31 31 H 1.08998 * 109.47230 * 180.02562 * 18 16 15 32 32 H 1.08998 * 109.46917 * 300.00535 * 18 16 15 33 33 H 1.09000 * 109.47183 * 60.00442 * 19 16 15 34 34 H 1.09004 * 109.47339 * 179.97438 * 19 16 15 35 35 H 1.08996 * 109.47106 * 300.00067 * 19 16 15 36 36 H 1.07997 * 126.03877 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6062 -0.6633 3.5106 8 7 2.7268 -0.0080 4.6457 9 14 3.0504 -2.4758 3.4268 10 1 4.4848 -2.6179 3.0695 11 1 2.8044 -3.1073 4.7481 12 1 2.2151 -3.1430 2.3961 13 6 2.0324 -0.7105 -1.2304 14 7 2.5368 -0.1281 -2.2653 15 6 2.9289 -0.9007 -3.2582 16 6 3.5355 -0.3552 -4.5252 17 6 3.7626 -1.4992 -5.5156 18 6 2.5865 0.6735 -5.1433 19 6 4.8732 0.3138 -4.2033 20 6 2.7445 -2.2078 -3.0494 21 16 2.0232 -2.4056 -1.4541 22 1 -0.3633 0.5139 0.8898 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 2.2489 -1.6318 1.1527 26 1 3.0466 -0.4660 5.4386 27 1 2.8095 -1.9758 -5.7449 28 1 4.2009 -1.1045 -6.4322 29 1 4.4387 -2.2321 -5.0754 30 1 2.4247 1.4884 -4.4377 31 1 3.0250 1.0677 -6.0600 32 1 1.6334 0.1969 -5.3726 33 1 5.5494 -0.4191 -3.7631 34 1 5.3122 0.7080 -5.1199 35 1 4.7114 1.1287 -3.4978 36 1 2.9970 -3.0027 -3.7355 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184473011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:46 Heat of formation + Delta-G solvation = 22.607416 kcal Electronic energy + Delta-G solvation = -16799.973907 eV Core-core repulsion = 14217.115138 eV Total energy + Delta-G solvation = -2582.858770 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.27234 -38.07821 -36.64865 -34.12958 -31.50952 -30.24789 -28.13162 -28.11789 -26.50086 -25.37862 -23.07632 -21.77189 -19.89758 -19.78064 -18.20332 -16.87046 -16.70995 -16.07655 -15.79837 -15.40954 -14.83027 -14.76286 -14.51610 -14.20127 -14.05203 -13.57604 -13.29497 -13.03492 -12.95357 -12.87661 -12.62783 -12.55298 -12.43319 -12.08772 -11.86537 -11.85894 -11.84071 -11.63545 -11.13461 -10.57490 -10.36557 -9.69463 -9.48160 -8.06648 -5.43560 -0.26268 0.40498 0.83154 1.33955 1.36563 1.43388 1.81622 2.43683 2.91533 3.24841 3.56913 3.74342 3.92369 4.08403 4.25190 4.35707 4.42092 4.44552 4.53597 4.78101 4.80409 4.86304 4.89583 4.94619 5.02660 5.03640 5.08396 5.17607 5.32161 5.37378 5.41442 5.48888 5.70123 6.14856 6.80585 6.98019 7.68898 7.88972 9.13993 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.030378 B = 0.005876 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.510469 B = 4763.838659 C = 4916.284582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.245 3.755 3 H 0.067 0.933 4 N -0.746 5.746 5 C -0.234 4.234 6 H 0.065 0.935 7 C -0.052 4.052 8 N -0.976 5.976 9 Si 0.937 3.063 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.249 1.249 13 C 0.045 3.955 14 N -0.484 5.484 15 C 0.064 3.936 16 C 0.006 3.994 17 C -0.139 4.139 18 C -0.131 4.131 19 C -0.134 4.134 20 C -0.257 4.257 21 S 0.116 5.884 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.364 0.636 26 H 0.260 0.740 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.039 0.961 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 -6.009 -22.972 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.134 3.866 3 H 0.085 0.915 4 N -0.391 5.391 5 C -0.365 4.365 6 H 0.083 0.917 7 C -0.244 4.244 8 N -0.626 5.626 9 Si 0.764 3.236 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.174 1.174 13 C -0.234 4.234 14 N -0.198 5.198 15 C -0.068 4.068 16 C 0.003 3.997 17 C -0.196 4.196 18 C -0.188 4.188 19 C -0.192 4.192 20 C -0.396 4.396 21 S 0.371 5.629 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.199 0.801 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.220 -6.116 -22.186 23.015 hybrid contribution 0.668 -0.392 0.181 0.795 sum 0.447 -6.508 -22.006 22.952 Atomic orbital electron populations 1.22246 0.94463 1.02196 1.01951 1.18811 0.93847 0.94536 0.79444 0.91502 1.42793 1.80484 1.09253 1.06536 1.18958 1.36199 0.94738 0.86562 0.91665 1.25377 1.01792 1.02163 0.95070 1.69850 1.54109 1.37660 1.00987 0.85671 0.78796 0.81448 0.77701 1.20534 1.21393 1.17386 1.27385 1.01814 0.95257 0.98910 1.66017 1.13113 1.39783 1.00921 1.20689 1.00568 0.89097 0.96413 1.19281 0.95015 0.96736 0.88658 1.21942 1.02557 0.96753 0.98380 1.21767 0.98553 0.97854 1.00646 1.21808 0.95219 0.99984 1.02148 1.27218 1.10845 1.01370 1.00172 1.83980 1.57290 1.08340 1.13313 0.92300 0.91196 0.92371 0.80146 0.93092 0.91579 0.89954 0.91828 0.93800 0.90093 0.92857 0.93275 0.89794 0.94192 0.77608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.47 71.98 0.68 -4.51 16 2 C 0.24 9.95 3.40 44.24 0.15 10.11 16 3 H 0.07 2.94 8.08 -2.39 -0.02 2.92 16 4 N -0.75 -35.62 4.91 -326.49 -1.60 -37.22 16 5 C -0.23 -13.36 10.41 84.04 0.87 -12.49 16 6 H 0.07 4.04 8.06 -2.91 -0.02 4.02 16 7 C -0.05 -3.05 5.50 84.86 0.47 -2.58 16 8 N -0.98 -62.30 13.97 21.65 0.30 -62.00 16 9 Si 0.94 45.24 27.74 68.60 1.90 47.14 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.25 -10.87 6.51 99.48 0.65 -10.22 16 13 C 0.04 1.62 6.30 88.52 0.56 2.18 16 14 N -0.48 -16.64 10.34 -179.41 -1.86 -18.50 16 15 C 0.06 1.77 5.29 41.52 0.22 1.99 16 16 C 0.01 0.13 0.98 -52.93 -0.05 0.07 16 17 C -0.14 -1.94 7.27 71.98 0.52 -1.42 16 18 C -0.13 -2.57 8.38 71.98 0.60 -1.97 16 19 C -0.13 -2.85 8.46 71.98 0.61 -2.24 16 20 C -0.26 -6.35 10.13 66.78 0.68 -5.68 16 21 S 0.12 3.49 22.26 -56.49 -1.26 2.23 16 22 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.36 16.78 4.83 -92.71 -0.45 16.33 16 26 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 27 H 0.07 0.84 7.93 -2.39 -0.02 0.83 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.84 7.53 -2.39 -0.02 0.82 16 30 H 0.04 1.06 8.08 -2.39 -0.02 1.04 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.21 3.54 6.78 -2.91 -0.02 3.52 16 Total: -1.00 -67.11 308.41 3.35 -63.76 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.55 Total: 21.11 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 5.31 Total: -16.53 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -3.16 Total: -117.72 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.14 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.26 Total: 2.23 kcal Total: -67.11 3.35 -63.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184473011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.369 kcal (2) G-P(sol) polarization free energy of solvation -67.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds