Wall clock time and date at job start Sun Mar 29 2020 23:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47014 * 2 1 4 4 C 1.50702 * 109.47045 * 180.02562 * 3 2 1 5 5 C 1.33633 * 122.74868 * 125.00015 * 4 3 2 6 6 S 1.76201 * 107.92221 * 179.75749 * 5 4 3 7 7 C 1.70979 * 90.28228 * 0.28306 * 6 5 4 8 8 C 1.50704 * 124.91480 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.46897 * 269.69157 * 8 7 6 10 10 C 1.36938 * 120.00206 * 270.00136 * 9 8 7 11 11 H 1.08001 * 119.99711 * 143.45476 * 10 9 8 12 12 C 1.38807 * 120.00048 * 323.45009 * 10 9 8 13 13 N 1.31614 * 120.00090 * 157.62194 * 12 10 9 14 14 Si 1.86802 * 119.99916 * 337.62038 * 12 10 9 15 15 H 1.48504 * 109.47185 * 95.15178 * 14 12 10 16 16 H 1.48502 * 109.46935 * 215.14796 * 14 12 10 17 17 H 1.48492 * 109.47482 * 335.14928 * 14 12 10 18 18 C 1.46499 * 119.99640 * 90.00619 * 9 8 7 19 19 C 1.53003 * 109.47076 * 266.13544 * 18 9 8 20 20 N 1.29031 * 110.16754 * 359.71146 * 7 6 5 21 21 H 1.09004 * 109.47390 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47525 * 299.99987 * 1 2 3 23 23 H 1.09003 * 109.47427 * 60.00119 * 1 2 3 24 24 H 1.09002 * 109.46863 * 240.00338 * 2 1 3 25 25 H 1.08994 * 109.47342 * 120.00094 * 2 1 3 26 26 H 1.08997 * 109.47083 * 59.99974 * 3 2 1 27 27 H 1.09003 * 109.46926 * 300.00188 * 3 2 1 28 28 H 1.07993 * 126.04155 * 359.97438 * 5 4 3 29 29 H 1.09007 * 109.46797 * 149.69599 * 8 7 6 30 30 H 1.08998 * 109.47217 * 29.69798 * 8 7 6 31 31 H 0.97003 * 120.00141 * 180.02562 * 13 12 10 32 32 H 1.09007 * 109.47531 * 26.13344 * 18 9 8 33 33 H 1.08993 * 109.47352 * 146.13519 * 18 9 8 34 34 H 1.08997 * 109.47400 * 185.42469 * 19 18 9 35 35 H 1.09003 * 109.47189 * 305.43081 * 19 18 9 36 36 H 1.09006 * 109.46947 * 65.42585 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2694 2.0874 -0.9215 6 16 5.9729 1.8345 -0.5489 7 6 5.5442 0.8800 0.8033 8 6 6.5241 0.2241 1.7417 9 7 6.8417 -1.1205 1.2543 10 6 6.0892 -2.1908 1.6585 11 1 5.8776 -2.9937 0.9678 12 6 5.5986 -2.2439 2.9559 13 7 4.5519 -2.9920 3.2335 14 14 6.4239 -1.2536 4.3078 15 1 5.7168 0.0416 4.4747 16 1 6.3701 -2.0146 5.5819 17 1 7.8405 -1.0007 3.9417 18 6 7.9645 -1.3200 0.3347 19 6 7.4544 -1.2873 -1.1075 20 7 4.2601 0.8071 0.9072 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9564 0.8900 27 1 1.6765 1.9564 -0.8900 28 1 3.8784 2.6647 -1.7462 29 1 6.0841 0.1554 2.7367 30 1 7.4364 0.8187 1.7882 31 1 4.2087 -3.0288 4.1401 32 1 8.6977 -0.5264 0.4788 33 1 8.4301 -2.2852 0.5335 34 1 8.2709 -1.5310 -1.7873 35 1 6.6529 -2.0164 -1.2260 36 1 7.0760 -0.2910 -1.3365 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426405958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:05 Heat of formation + Delta-G solvation = 55.018509 kcal Electronic energy + Delta-G solvation = -17208.616083 eV Core-core repulsion = 14627.162763 eV Total energy + Delta-G solvation = -2581.453319 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.32832 -36.39406 -34.34870 -31.96499 -31.06035 -29.36972 -26.93410 -26.62062 -23.90574 -22.38987 -21.17529 -20.38796 -19.03262 -17.37659 -16.57937 -15.55575 -14.86384 -14.59961 -14.46175 -13.84530 -13.52041 -13.39642 -13.12213 -12.68278 -12.32684 -12.17457 -12.02443 -11.91569 -11.74389 -11.27280 -10.94331 -10.79946 -10.67126 -10.58249 -10.29948 -10.09720 -10.05880 -9.64532 -8.88645 -8.74349 -8.50404 -8.07845 -6.98331 -6.01926 -3.42776 1.32193 1.99284 2.35884 3.30554 3.42935 3.47281 3.48600 4.50167 4.70130 4.96826 5.22702 5.32164 5.37799 5.42112 5.63396 5.71042 5.84529 5.85140 5.90631 5.98146 6.04049 6.17933 6.19597 6.25546 6.32371 6.40746 6.46799 6.57206 6.73663 6.75289 6.85614 7.01891 7.96778 8.34059 8.54634 8.88831 9.66107 10.00579 11.12769 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.009782 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.551136 B = 2861.815336 C = 3778.990629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.039 4.039 4 C 0.079 3.921 5 C -0.287 4.287 6 S 0.054 5.946 7 C 0.084 3.916 8 C 0.195 3.805 9 N -0.583 5.583 10 C -0.271 4.271 11 H 0.079 0.921 12 C 0.050 3.950 13 N -0.884 5.884 14 Si 0.869 3.131 15 H -0.281 1.281 16 H -0.298 1.298 17 H -0.267 1.267 18 C 0.141 3.859 19 C -0.176 4.176 20 N -0.457 5.457 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.164 0.836 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.264 0.736 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.054 0.946 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 9.836 -7.251 12.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.079 4.079 4 C -0.054 4.054 5 C -0.426 4.426 6 S 0.309 5.691 7 C -0.198 4.198 8 C 0.065 3.935 9 N -0.304 5.304 10 C -0.400 4.400 11 H 0.096 0.904 12 C -0.152 4.152 13 N -0.523 5.523 14 Si 0.699 3.301 15 H -0.209 1.209 16 H -0.226 1.226 17 H -0.191 1.191 18 C 0.016 3.984 19 C -0.236 4.236 20 N -0.171 5.171 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.181 0.819 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.471 9.735 -7.120 12.070 hybrid contribution -0.735 0.517 0.523 1.040 sum -0.264 10.252 -6.597 12.194 Atomic orbital electron populations 1.21761 0.96170 1.01558 1.01049 1.21434 0.94814 0.95700 1.03721 1.20165 0.87503 0.98281 1.01982 1.20368 0.97719 0.95910 0.91369 1.26492 0.95072 1.13229 1.07842 1.83691 1.08431 1.47976 1.29013 1.29160 0.94884 0.96782 0.98976 1.20299 0.92528 0.86074 0.94622 1.44215 1.31780 1.01020 1.53421 1.18651 1.27498 0.99141 0.94685 0.90371 1.25346 0.96158 0.96494 0.97236 1.69874 1.20642 1.41417 1.20383 0.87044 0.81275 0.79429 0.82381 1.20861 1.22581 1.19130 1.20973 0.88754 0.99778 0.88893 1.22422 1.00784 1.01879 0.98490 1.66087 1.04690 1.19703 1.26606 0.92699 0.92908 0.93353 0.92356 0.90004 0.90708 0.91187 0.81885 0.89786 0.91763 0.92566 0.94209 0.92194 0.93934 0.92699 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.15 0.37 -1.57 16 2 C -0.12 -1.95 5.84 -26.73 -0.16 -2.11 16 3 C -0.04 -0.61 5.71 -27.88 -0.16 -0.76 16 4 C 0.08 1.47 6.08 -84.23 -0.51 0.96 16 5 C -0.29 -4.71 11.07 29.12 0.32 -4.39 16 6 S 0.05 0.92 21.12 -107.50 -2.27 -1.36 16 7 C 0.08 1.78 6.96 -13.45 -0.09 1.69 16 8 C 0.20 4.31 5.12 -5.19 -0.03 4.28 16 9 N -0.58 -13.69 2.09 -174.60 -0.36 -14.06 16 10 C -0.27 -7.50 9.93 -15.06 -0.15 -7.65 16 11 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 12 C 0.05 1.43 5.31 -17.43 -0.09 1.34 16 13 N -0.88 -26.80 13.97 55.49 0.78 -26.03 16 14 Si 0.87 21.78 25.01 -169.99 -4.25 17.53 16 15 H -0.28 -6.97 6.66 56.52 0.38 -6.59 16 16 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.14 2.75 6.43 -4.04 -0.03 2.73 16 19 C -0.18 -3.16 10.22 37.16 0.38 -2.78 16 20 N -0.46 -10.20 10.35 -8.05 -0.08 -10.29 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.08 1.66 8.08 -51.93 -0.42 1.24 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.07 0.88 8.03 -51.93 -0.42 0.46 16 28 H 0.16 2.14 8.06 -52.49 -0.42 1.71 16 29 H 0.08 2.06 3.12 -51.92 -0.16 1.89 16 30 H 0.06 1.21 7.87 -51.93 -0.41 0.80 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 32 H 0.04 0.68 7.85 -51.93 -0.41 0.27 16 33 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.90 5.90 -51.93 -0.31 0.60 16 LS Contribution 306.31 15.07 4.62 4.62 Total: -1.00 -30.60 306.31 -7.23 -37.83 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.51 Total: 0.02 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -0.14 Total: -8.27 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.33 Total: -50.37 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.25 Total: 17.53 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.27 Total: -1.36 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.60 -7.23 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426405958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.851 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds