Wall clock time and date at job start Sun Mar 29 2020 23:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47014 * 2 1 4 4 C 1.50702 * 109.47045 * 180.02562 * 3 2 1 5 5 C 1.33633 * 122.74868 * 125.00015 * 4 3 2 6 6 S 1.76201 * 107.92221 * 179.75749 * 5 4 3 7 7 C 1.70979 * 90.28228 * 0.28306 * 6 5 4 8 8 C 1.50704 * 124.91480 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.46897 * 269.69157 * 8 7 6 10 10 C 1.36938 * 120.00206 * 270.00136 * 9 8 7 11 11 H 1.08001 * 119.99711 * 143.45476 * 10 9 8 12 12 C 1.38807 * 120.00048 * 323.45009 * 10 9 8 13 13 N 1.31614 * 120.00090 * 157.62194 * 12 10 9 14 14 Si 1.86802 * 119.99916 * 337.62038 * 12 10 9 15 15 H 1.48504 * 109.47185 * 95.15178 * 14 12 10 16 16 H 1.48502 * 109.46935 * 215.14796 * 14 12 10 17 17 H 1.48492 * 109.47482 * 335.14928 * 14 12 10 18 18 C 1.46499 * 119.99640 * 90.00619 * 9 8 7 19 19 C 1.53003 * 109.47076 * 266.13544 * 18 9 8 20 20 N 1.29031 * 110.16754 * 359.71146 * 7 6 5 21 21 H 1.09004 * 109.47390 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47525 * 299.99987 * 1 2 3 23 23 H 1.09003 * 109.47427 * 60.00119 * 1 2 3 24 24 H 1.09002 * 109.46863 * 240.00338 * 2 1 3 25 25 H 1.08994 * 109.47342 * 120.00094 * 2 1 3 26 26 H 1.08997 * 109.47083 * 59.99974 * 3 2 1 27 27 H 1.09003 * 109.46926 * 300.00188 * 3 2 1 28 28 H 1.07993 * 126.04155 * 359.97438 * 5 4 3 29 29 H 1.09007 * 109.46797 * 149.69599 * 8 7 6 30 30 H 1.08998 * 109.47217 * 29.69798 * 8 7 6 31 31 H 0.97003 * 120.00141 * 180.02562 * 13 12 10 32 32 H 1.09007 * 109.47531 * 26.13344 * 18 9 8 33 33 H 1.08993 * 109.47352 * 146.13519 * 18 9 8 34 34 H 1.08997 * 109.47400 * 185.42469 * 19 18 9 35 35 H 1.09003 * 109.47189 * 305.43081 * 19 18 9 36 36 H 1.09006 * 109.46947 * 65.42585 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2694 2.0874 -0.9215 6 16 5.9729 1.8345 -0.5489 7 6 5.5442 0.8800 0.8033 8 6 6.5241 0.2241 1.7417 9 7 6.8417 -1.1205 1.2543 10 6 6.0892 -2.1908 1.6585 11 1 5.8776 -2.9937 0.9678 12 6 5.5986 -2.2439 2.9559 13 7 4.5519 -2.9920 3.2335 14 14 6.4239 -1.2536 4.3078 15 1 5.7168 0.0416 4.4747 16 1 6.3701 -2.0146 5.5819 17 1 7.8405 -1.0007 3.9417 18 6 7.9645 -1.3200 0.3347 19 6 7.4544 -1.2873 -1.1075 20 7 4.2601 0.8071 0.9072 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9564 0.8900 27 1 1.6765 1.9564 -0.8900 28 1 3.8784 2.6647 -1.7462 29 1 6.0841 0.1554 2.7367 30 1 7.4364 0.8187 1.7882 31 1 4.2087 -3.0288 4.1401 32 1 8.6977 -0.5264 0.4788 33 1 8.4301 -2.2852 0.5335 34 1 8.2709 -1.5310 -1.7873 35 1 6.6529 -2.0164 -1.2260 36 1 7.0760 -0.2910 -1.3365 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426405958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:04 Heat of formation + Delta-G solvation = 35.590388 kcal Electronic energy + Delta-G solvation = -17209.458549 eV Core-core repulsion = 14627.162763 eV Total energy + Delta-G solvation = -2582.295786 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.79170 -38.12387 -35.65603 -34.01900 -32.53267 -30.94972 -28.61315 -27.90021 -25.75438 -23.85741 -22.51246 -22.11247 -20.48909 -19.10829 -18.24256 -17.38845 -16.40769 -16.12733 -15.90804 -15.34337 -15.20704 -14.89978 -14.69128 -14.21125 -14.01854 -13.78515 -13.52939 -13.20224 -13.15492 -12.75910 -12.63353 -12.43615 -12.12190 -12.05369 -11.85537 -11.74765 -11.58706 -11.49897 -10.67047 -10.33171 -10.16300 -9.46761 -8.88520 -8.19680 -5.58964 -0.10582 0.60050 0.92271 1.30782 1.39070 1.50166 1.98021 2.42304 3.02681 3.35066 3.42060 4.00071 4.06643 4.16862 4.27197 4.37570 4.39300 4.51786 4.58685 4.63119 4.72613 4.76627 4.80472 4.88381 4.97008 5.01845 5.15167 5.21081 5.32291 5.41921 5.47599 5.51541 5.90920 6.16394 6.91983 7.12117 7.58785 7.97445 8.99618 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.009782 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.551136 B = 2861.815336 C = 3778.990629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C -0.035 4.035 4 C 0.045 3.955 5 C -0.268 4.268 6 S 0.132 5.868 7 C 0.039 3.961 8 C 0.192 3.808 9 N -0.597 5.597 10 C -0.256 4.256 11 H 0.033 0.967 12 C -0.007 4.007 13 N -0.940 5.940 14 Si 0.936 3.064 15 H -0.281 1.281 16 H -0.306 1.306 17 H -0.243 1.243 18 C 0.134 3.866 19 C -0.165 4.165 20 N -0.501 5.501 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.045 0.955 25 H 0.028 0.972 26 H 0.076 0.924 27 H 0.109 0.891 28 H 0.206 0.794 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.261 0.739 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.018 0.982 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 13.114 -9.230 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.074 4.074 4 C -0.087 4.087 5 C -0.407 4.407 6 S 0.387 5.613 7 C -0.242 4.242 8 C 0.062 3.938 9 N -0.319 5.319 10 C -0.386 4.386 11 H 0.050 0.950 12 C -0.205 4.205 13 N -0.583 5.583 14 Si 0.764 3.236 15 H -0.209 1.209 16 H -0.234 1.234 17 H -0.166 1.166 18 C 0.010 3.990 19 C -0.225 4.225 20 N -0.217 5.217 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.223 0.777 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.038 0.962 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.636 13.038 -9.124 15.997 hybrid contribution -1.090 -0.387 0.920 1.478 sum 0.546 12.651 -8.204 15.088 Atomic orbital electron populations 1.21706 0.93342 1.01936 1.02782 1.21336 0.97269 0.96264 1.00428 1.20254 0.85894 0.97361 1.03928 1.20801 0.99164 0.96893 0.91872 1.27092 0.94926 1.11260 1.07408 1.83241 1.07842 1.45083 1.25149 1.28650 0.94634 0.99519 1.01423 1.20213 0.94151 0.85816 0.93577 1.44237 1.32694 1.00700 1.54262 1.18400 1.26847 0.99623 0.93758 0.94955 1.25964 0.96635 0.98306 0.99561 1.70017 1.22910 1.44824 1.20526 0.85976 0.81246 0.77566 0.78814 1.20914 1.23420 1.16575 1.21190 0.88266 1.00862 0.88694 1.22307 1.00766 1.00998 0.98384 1.66077 1.05988 1.20698 1.28911 0.93110 0.92236 0.90433 0.93641 0.95327 0.90530 0.87245 0.77724 0.92738 0.88148 0.92987 0.90561 0.92845 0.90479 0.96241 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.91 71.98 0.71 -2.82 16 2 C -0.11 -3.84 5.84 30.59 0.18 -3.67 16 3 C -0.03 -1.01 5.71 29.85 0.17 -0.84 16 4 C 0.04 1.59 6.08 41.52 0.25 1.84 16 5 C -0.27 -7.72 11.07 66.77 0.74 -6.98 16 6 S 0.13 3.98 21.12 -56.49 -1.19 2.78 16 7 C 0.04 1.59 6.96 88.52 0.62 2.20 16 8 C 0.19 8.26 5.12 85.63 0.44 8.70 16 9 N -0.60 -27.94 2.09 -706.32 -1.47 -29.41 16 10 C -0.26 -14.84 9.93 84.03 0.83 -14.01 16 11 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 12 C -0.01 -0.42 5.31 84.86 0.45 0.03 16 13 N -0.94 -60.64 13.97 21.65 0.30 -60.34 16 14 Si 0.94 46.62 25.01 68.60 1.72 48.34 16 15 H -0.28 -13.87 6.66 99.48 0.66 -13.20 16 16 H -0.31 -15.37 7.11 99.48 0.71 -14.67 16 17 H -0.24 -10.95 7.11 99.48 0.71 -10.24 16 18 C 0.13 4.98 6.43 86.38 0.56 5.54 16 19 C -0.17 -5.64 10.22 71.98 0.74 -4.91 16 20 N -0.50 -22.47 10.35 -179.40 -1.86 -24.32 16 21 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 22 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 26 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.11 2.30 8.03 -2.39 -0.02 2.28 16 28 H 0.21 4.10 8.06 -2.91 -0.02 4.07 16 29 H 0.05 2.66 3.12 -2.38 -0.01 2.65 16 30 H 0.10 3.48 7.87 -2.39 -0.02 3.46 16 31 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 32 H 0.08 2.30 7.85 -2.38 -0.02 2.28 16 33 H 0.05 2.03 8.07 -2.39 -0.02 2.01 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 1.80 5.90 -2.38 -0.01 1.79 16 Total: -1.00 -72.34 306.31 4.19 -68.15 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.01 Total: 9.70 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 5.69 Total: -14.91 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -3.03 Total: -114.07 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.72 Total: 48.34 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.19 Total: 2.78 kcal Total: -72.34 4.19 -68.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426405958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.743 kcal (2) G-P(sol) polarization free energy of solvation -72.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds