Wall clock time and date at job start Sun Mar 29 2020 23:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47391 * 344.33741 * 3 2 1 5 5 C 1.36936 * 119.99961 * 264.65422 * 4 3 2 6 6 H 1.07999 * 120.00344 * 196.36400 * 5 4 3 7 7 C 1.38812 * 119.99885 * 16.37132 * 5 4 3 8 8 N 1.31618 * 120.00110 * 22.67789 * 7 5 4 9 9 Si 1.86801 * 119.99862 * 202.67627 * 7 5 4 10 10 H 1.48500 * 109.47240 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46969 * 120.00020 * 9 7 5 12 12 H 1.48495 * 109.47219 * 239.99647 * 9 7 5 13 13 C 1.46502 * 119.99999 * 84.65734 * 4 3 2 14 14 C 1.50700 * 109.47177 * 270.00115 * 13 4 3 15 15 C 1.38379 * 119.84546 * 270.29873 * 14 13 4 16 16 C 1.37933 * 120.15078 * 180.25576 * 15 14 13 17 17 C 1.39650 * 119.84291 * 359.44783 * 16 15 14 18 18 C 1.43195 * 120.15051 * 180.29736 * 17 16 15 19 19 N 7.07598 * 57.91389 * 10.32933 * 2 1 3 20 20 C 1.39612 * 119.70069 * 0.27205 * 17 16 15 21 21 C 1.50704 * 120.07801 * 180.02562 * 20 17 16 22 22 C 1.37970 * 119.84691 * 0.02562 * 20 17 16 23 23 H 4.40643 * 5.51522 * 179.97438 * 4 1 2 24 24 H 1.09009 * 109.47014 * 224.33656 * 3 2 1 25 25 H 1.08999 * 109.47165 * 104.33740 * 3 2 1 26 26 H 0.97006 * 120.00016 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.46692 * 149.99576 * 13 4 3 28 28 H 1.09006 * 109.46914 * 30.00102 * 13 4 3 29 29 H 1.07997 * 119.92894 * 359.97438 * 15 14 13 30 30 H 1.08002 * 120.07800 * 179.72116 * 16 15 14 31 31 H 1.08997 * 109.47097 * 90.00087 * 21 20 17 32 32 H 1.08995 * 109.46955 * 210.00122 * 21 20 17 33 33 H 1.09000 * 109.47126 * 330.00244 * 21 20 17 34 34 H 1.08003 * 119.92648 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3291 0.3729 5 6 3.4675 -1.5962 1.6741 6 1 4.0660 -2.4633 1.9115 7 6 3.0352 -0.7526 2.6882 8 7 1.9809 0.0131 2.5026 9 14 3.9498 -0.7041 4.3162 10 1 5.0918 -1.6523 4.2709 11 1 4.4576 0.6704 4.5580 12 1 3.0276 -1.0912 5.4138 13 6 3.2683 -2.3729 -0.6464 14 6 1.9805 -3.1498 -0.7412 15 6 1.7890 -4.2654 0.0549 16 6 0.6149 -4.9842 -0.0306 17 6 -0.3865 -4.5770 -0.9147 18 6 -1.6106 -5.3146 -1.0041 19 7 -2.5847 -5.8980 -1.0750 20 6 -0.1890 -3.4471 -1.7106 21 6 -1.2641 -2.9997 -2.6672 22 6 0.9928 -2.7410 -1.6194 23 1 -1.0498 -0.0004 0.0003 24 1 3.0090 0.7359 0.7183 25 1 3.0092 0.2553 -0.9956 26 1 1.6790 0.6029 3.2111 27 1 4.0799 -3.0468 -0.3722 28 1 3.4874 -1.9136 -1.6103 29 1 2.5624 -4.5767 0.7413 30 1 0.4685 -5.8573 0.5880 31 1 -1.9324 -2.3022 -2.1623 32 1 -0.8055 -2.5074 -3.5247 33 1 -1.8321 -3.8660 -3.0064 34 1 1.1472 -1.8670 -2.2348 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491692521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:59 Heat of formation + Delta-G solvation = 131.139100 kcal Electronic energy + Delta-G solvation = -17966.059654 eV Core-core repulsion = 15252.463220 eV Total energy + Delta-G solvation = -2713.596434 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.31123 -36.60057 -35.72107 -32.87042 -31.88780 -31.50228 -30.29022 -26.88694 -26.56793 -25.87807 -22.78032 -21.61180 -20.45383 -18.22831 -17.52544 -16.47100 -15.40343 -15.30163 -14.64469 -14.10992 -14.09107 -13.73601 -13.51612 -13.14219 -12.88319 -12.79328 -12.51816 -12.43442 -12.14979 -11.73812 -11.53661 -11.21537 -11.04744 -10.94625 -10.83966 -10.49926 -10.33095 -10.03053 -9.03334 -8.89561 -8.52532 -8.31759 -8.14007 -7.15936 -5.91409 -3.28899 1.20046 1.82147 2.90315 3.27095 3.31458 3.39871 3.40858 4.10958 4.23122 4.32264 4.35879 4.47567 5.05872 5.10858 5.22692 5.40917 5.60238 5.65170 5.74500 5.80470 5.82918 5.93750 5.97653 6.07717 6.26108 6.44888 6.52410 6.61315 6.72600 6.78616 7.13965 7.17218 7.33387 7.38799 7.64394 7.74452 8.13919 8.97202 9.17723 9.62585 10.07441 11.10931 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.023869 B = 0.006688 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.776193 B = 4185.377441 C = 4484.054940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.098 4.098 3 C 0.265 3.735 4 N -0.571 5.571 5 C -0.263 4.263 6 H 0.079 0.921 7 C 0.005 3.995 8 N -0.879 5.879 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.292 1.292 13 C 0.170 3.830 14 C -0.046 4.046 15 C -0.110 4.110 16 C -0.069 4.069 17 C -0.066 4.066 18 C 0.272 3.728 19 N -0.450 5.450 20 C -0.038 4.038 21 C -0.117 4.117 22 C -0.107 4.107 23 H 0.186 0.814 24 H 0.097 0.903 25 H 0.039 0.961 26 H 0.255 0.745 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.084 -3.351 -8.220 8.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.100 4.100 3 C 0.140 3.860 4 N -0.289 5.289 5 C -0.392 4.392 6 H 0.097 0.903 7 C -0.195 4.195 8 N -0.521 5.521 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.219 1.219 13 C 0.044 3.956 14 C -0.051 4.051 15 C -0.129 4.129 16 C -0.090 4.090 17 C -0.070 4.070 18 C -0.041 4.041 19 N -0.127 5.127 20 C -0.041 4.041 21 C -0.173 4.173 22 C -0.126 4.126 23 H 0.203 0.797 24 H 0.115 0.885 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.409 -4.094 -8.177 9.154 hybrid contribution 0.051 0.270 1.386 1.413 sum -0.358 -3.823 -6.791 7.802 Atomic orbital electron populations 1.24073 0.95203 1.03983 1.07849 1.24102 0.95095 0.96874 0.93977 1.17906 0.83028 0.88142 0.96880 1.44540 1.73418 1.05556 1.05368 1.19295 1.26167 1.11393 0.82354 0.90331 1.24961 0.96284 1.00383 0.97860 1.70155 1.21037 1.27835 1.33065 0.86253 0.79493 0.77629 0.83572 1.20143 1.21437 1.21869 1.20189 0.91742 0.90530 0.93151 1.21369 0.99640 0.92337 0.91726 1.20879 0.97265 0.95470 0.99332 1.21014 0.92567 0.99278 0.96096 1.15745 0.89594 0.97574 1.04067 1.25920 0.92837 0.92678 0.92713 1.81240 1.11308 1.10477 1.09642 1.19729 0.95483 0.93165 0.95681 1.20827 0.97052 1.01400 0.98047 1.20711 0.92636 0.99168 1.00087 0.79682 0.88490 0.94331 0.93399 0.91822 0.92692 0.85535 0.86082 0.90785 0.90985 0.92291 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.25 19.02 29.55 0.56 -5.69 16 2 C -0.10 -2.17 10.28 -37.12 -0.38 -2.56 16 3 C 0.27 5.70 5.45 -6.83 -0.04 5.66 16 4 N -0.57 -12.39 2.49 -177.94 -0.44 -12.83 16 5 C -0.26 -6.38 9.66 -15.06 -0.15 -6.53 16 6 H 0.08 1.86 7.91 -52.49 -0.41 1.45 16 7 C 0.01 0.14 4.84 -17.43 -0.08 0.05 16 8 N -0.88 -23.53 9.49 55.49 0.53 -23.00 16 9 Si 0.90 20.29 29.61 -169.99 -5.03 15.26 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.17 2.98 5.82 -5.19 -0.03 2.95 16 14 C -0.05 -0.78 5.23 -104.53 -0.55 -1.33 16 15 C -0.11 -1.83 9.68 -39.64 -0.38 -2.21 16 16 C -0.07 -1.07 9.76 -39.17 -0.38 -1.45 16 17 C -0.07 -1.03 5.73 -106.93 -0.61 -1.65 16 18 C 0.27 4.40 13.81 -22.42 -0.31 4.10 16 19 N -0.45 -7.83 18.55 41.90 0.78 -7.05 16 20 C -0.04 -0.58 5.91 -104.21 -0.62 -1.19 16 21 C -0.12 -1.49 9.61 36.01 0.35 -1.15 16 22 C -0.11 -1.72 8.04 -39.64 -0.32 -2.04 16 23 H 0.19 3.48 7.80 -54.10 -0.42 3.06 16 24 H 0.10 2.31 6.43 -51.92 -0.33 1.98 16 25 H 0.04 0.71 7.97 -51.93 -0.41 0.29 16 26 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 27 H 0.06 1.05 7.97 -51.93 -0.41 0.63 16 28 H 0.05 0.84 7.89 -51.93 -0.41 0.43 16 29 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 30 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.06 0.74 7.09 -51.93 -0.37 0.37 16 34 H 0.12 1.86 8.06 -52.48 -0.42 1.43 16 LS Contribution 306.06 15.07 4.61 4.61 Total: -1.00 -27.97 306.06 -6.52 -34.50 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.02 Total: 1.56 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -2.94 Total: -13.03 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.86 Total: -42.89 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.97 -6.52 -34.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491692521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.634 kcal (2) G-P(sol) polarization free energy of solvation -27.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds