Wall clock time and date at job start Mon Mar 30 2020 00:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47301 * 2 1 4 4 C 1.50705 * 109.46626 * 119.99937 * 2 1 3 5 5 H 1.07997 * 119.99715 * 120.00209 * 4 2 1 6 6 C 1.37881 * 119.99778 * 299.99720 * 4 2 1 7 7 N 1.31506 * 119.99756 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99808 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47237 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47142 * 119.99938 * 8 6 4 11 11 H 1.48496 * 109.47240 * 240.00125 * 8 6 4 12 12 N 1.46900 * 109.47042 * 239.99445 * 2 1 3 13 13 C 1.46900 * 111.00170 * 85.00658 * 12 2 1 14 14 C 1.52990 * 109.47383 * 179.97438 * 13 12 2 15 15 H 1.09003 * 109.47290 * 304.99860 * 14 13 12 16 16 O 1.42906 * 109.47225 * 65.00018 * 14 13 12 17 17 C 1.50703 * 109.47230 * 184.99633 * 14 13 12 18 18 C 1.38238 * 119.58717 * 124.99606 * 17 14 13 19 19 C 1.38588 * 119.18753 * 179.70249 * 18 17 14 20 20 C 1.38886 * 118.40029 * 0.27923 * 19 18 17 21 21 F 1.35100 * 120.44340 * 179.97438 * 20 19 18 22 22 C 1.38413 * 119.10961 * 0.02562 * 20 19 18 23 23 N 1.31845 * 119.59079 * 305.25294 * 17 14 13 24 24 H 1.09008 * 109.46527 * 60.00162 * 1 2 3 25 25 H 1.08999 * 109.47301 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47467 * 300.00539 * 1 2 3 27 27 H 0.97003 * 119.99766 * 179.97438 * 7 6 4 28 28 H 1.00903 * 110.99984 * 208.95340 * 12 2 1 29 29 H 1.09007 * 109.46975 * 59.99250 * 13 12 2 30 30 H 1.09007 * 109.46794 * 300.00279 * 13 12 2 31 31 H 0.96696 * 114.00141 * 59.99913 * 16 14 13 32 32 H 1.08002 * 120.40978 * 359.97438 * 18 17 14 33 33 H 1.07999 * 120.80386 * 180.30037 * 19 18 17 34 34 H 1.08002 * 119.63494 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3222 -1.1194 4.0081 9 1 3.1480 -2.2856 3.6040 10 1 3.1469 -0.1857 4.8162 11 1 1.1674 -1.5864 4.8165 12 7 2.0196 -0.6926 -1.1994 13 6 2.0826 0.2224 -2.3469 14 6 2.5963 -0.5331 -3.5740 15 1 3.5521 -1.0014 -3.3387 16 8 1.6513 -1.5392 -3.9442 17 6 2.7775 0.4310 -4.7181 18 6 4.0033 0.5161 -5.3513 19 6 4.1589 1.4010 -6.4065 20 6 3.0705 2.1766 -6.7841 21 9 3.1764 3.0531 -7.8068 22 6 1.8761 2.0404 -6.0980 23 7 1.7663 1.1864 -5.0992 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.7080 1.1610 3.4843 28 1 2.9173 -1.1206 -1.0286 29 1 2.7590 1.0460 -2.1182 30 1 1.0872 0.6162 -2.5525 31 1 0.7762 -1.1938 -4.1675 32 1 4.8284 -0.1026 -5.0307 33 1 5.1037 1.4852 -6.9229 34 1 1.0244 2.6397 -6.3843 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878819653.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:53 Heat of formation + Delta-G solvation = -61.387137 kcal Electronic energy + Delta-G solvation = -18165.760044 eV Core-core repulsion = 15013.045822 eV Total energy + Delta-G solvation = -3152.714223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.23566 -40.49977 -37.27778 -35.25767 -32.75759 -32.54760 -31.57868 -29.13769 -26.51439 -25.18535 -24.30520 -23.20811 -21.38392 -19.78801 -17.95848 -17.52741 -17.25488 -16.65330 -16.05407 -15.44497 -15.02737 -14.75733 -14.32519 -14.13970 -13.77966 -13.68114 -13.40198 -13.06528 -12.83485 -12.37762 -11.66690 -11.46623 -10.98870 -10.91530 -10.68615 -10.43110 -10.21241 -10.15974 -10.11088 -9.99515 -9.48820 -9.08288 -8.78722 -8.46923 -7.24047 -6.01803 -4.08198 0.62056 0.82968 3.29349 3.33050 3.37266 3.41581 3.72525 4.04049 4.28611 4.41880 4.46636 4.57475 4.72809 5.13325 5.25633 5.29519 5.37607 5.49240 5.56734 5.62741 5.80544 6.18853 6.32576 6.42913 6.91037 7.17061 7.25631 7.51152 7.59792 7.78817 7.84634 7.92837 8.29205 8.39077 8.67910 9.02740 9.57791 11.04575 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.040414 B = 0.003934 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.655957 B = 7115.350735 C = 7189.095422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.517 4.517 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.679 5.679 13 C 0.039 3.961 14 C 0.165 3.835 15 H 0.110 0.890 16 O -0.538 6.538 17 C 0.093 3.907 18 C -0.130 4.130 19 C -0.109 4.109 20 C 0.041 3.959 21 F -0.132 7.132 22 C 0.079 3.921 23 N -0.444 5.444 24 H 0.004 0.996 25 H 0.032 0.968 26 H 0.079 0.921 27 H 0.260 0.740 28 H 0.329 0.671 29 H 0.023 0.977 30 H 0.078 0.922 31 H 0.378 0.622 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 2.044 -17.545 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.310 5.310 13 C -0.092 4.092 14 C 0.105 3.895 15 H 0.128 0.872 16 O -0.343 6.343 17 C -0.045 4.045 18 C -0.150 4.150 19 C -0.135 4.135 20 C 0.019 3.981 21 F -0.111 7.111 22 C -0.080 4.080 23 N -0.153 5.153 24 H 0.023 0.977 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.146 0.854 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.226 0.774 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.213 1.467 -17.032 17.607 hybrid contribution 1.493 0.981 0.285 1.809 sum 5.706 2.448 -16.747 17.861 Atomic orbital electron populations 1.21700 0.97793 0.99390 0.99282 1.19122 0.92754 0.92186 0.85550 0.98339 1.21310 1.31391 1.12473 0.90417 0.92090 1.24926 0.95066 0.95000 0.99073 1.69912 1.36685 1.22965 1.23335 0.86463 0.78617 0.79600 0.82850 1.19714 1.21156 1.20962 1.60671 1.32023 1.32665 1.05607 1.22522 1.01041 0.94113 0.91533 1.20861 0.94207 0.86137 0.88344 0.87208 1.86566 1.24298 1.33748 1.89639 1.22408 0.89444 0.95371 0.97323 1.21972 0.98971 0.98680 0.95333 1.21668 0.98788 0.95446 0.97639 1.18841 0.96698 0.92955 0.89565 1.91519 1.96665 1.66531 1.56392 1.22949 0.96112 0.96986 0.91979 1.67544 1.31962 1.04031 1.11754 0.97725 0.94874 0.90201 0.93003 0.85369 0.95878 0.90355 0.77381 0.83451 0.83467 0.81465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.19 37.16 0.34 -2.78 16 2 C 0.21 5.40 2.60 -68.86 -0.18 5.22 16 3 H 0.00 -0.03 7.80 -51.93 -0.40 -0.43 16 4 C -0.52 -14.25 8.59 -34.44 -0.30 -14.55 16 5 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.59 11.32 55.43 0.63 -24.96 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.68 -14.46 6.25 -107.95 -0.67 -15.13 16 13 C 0.04 0.69 4.92 -3.83 -0.02 0.67 16 14 C 0.17 2.36 3.47 -27.89 -0.10 2.27 16 15 H 0.11 1.42 7.87 -51.93 -0.41 1.01 16 16 O -0.54 -8.29 13.27 -35.23 -0.47 -8.76 16 17 C 0.09 1.19 5.78 -82.59 -0.48 0.71 16 18 C -0.13 -1.32 9.71 -39.45 -0.38 -1.70 16 19 C -0.11 -1.01 10.16 -39.21 -0.40 -1.41 16 20 C 0.04 0.42 7.35 -39.28 -0.29 0.14 16 21 F -0.13 -1.37 17.28 2.25 0.04 -1.33 16 22 C 0.08 0.87 11.17 -17.47 -0.20 0.67 16 23 N -0.44 -5.84 9.95 -9.42 -0.09 -5.93 16 24 H 0.00 0.09 7.45 -51.92 -0.39 -0.30 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.33 6.78 8.22 -39.29 -0.32 6.46 16 29 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 30 H 0.08 1.48 7.37 -51.93 -0.38 1.10 16 31 H 0.38 5.19 9.02 45.56 0.41 5.60 16 32 H 0.15 1.13 7.95 -52.49 -0.42 0.72 16 33 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.17 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 297.18 15.07 4.48 4.48 Total: -1.00 -30.48 297.18 -6.65 -37.12 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -3.45 Total: 7.41 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -2.09 Total: -9.16 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.14 Total: -46.02 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.47 Total: -8.76 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.48 -6.65 -37.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878819653.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.263 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds