Wall clock time and date at job start Sun Mar 29 2020 23:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35315 * 126.03829 * 2 1 4 4 N 1.34955 * 107.74306 * 179.87324 * 3 2 1 5 5 C 1.46493 * 126.03606 * 180.14569 * 4 3 2 6 6 N 1.40079 * 107.92480 * 0.39416 * 4 3 2 7 7 C 1.30843 * 108.20761 * 359.75375 * 6 4 3 8 8 C 1.50696 * 125.89931 * 179.97438 * 7 6 4 9 9 S 1.81405 * 109.47113 * 270.02564 * 8 7 6 10 10 C 1.81390 * 103.00314 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47255 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47145 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47321 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99995 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00525 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99639 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00124 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47358 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47104 * 120.00574 * 17 15 13 20 20 H 1.48510 * 109.46708 * 240.00098 * 17 15 13 21 21 H 1.09002 * 109.47152 * 269.68779 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.68879 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.68860 * 1 2 3 24 24 H 1.07998 * 126.12681 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.47340 * 270.26498 * 5 4 3 26 26 H 1.08998 * 109.47431 * 30.26477 * 5 4 3 27 27 H 1.09000 * 109.47150 * 150.26070 * 5 4 3 28 28 H 1.09000 * 109.47621 * 30.02091 * 8 7 6 29 29 H 1.09002 * 109.47450 * 150.02817 * 8 7 6 30 30 H 1.08996 * 109.47376 * 299.99867 * 10 9 8 31 31 H 1.09006 * 109.47114 * 60.00165 * 10 9 8 32 32 H 1.09005 * 109.47247 * 299.99779 * 11 10 9 33 33 H 1.08997 * 109.47303 * 60.00096 * 11 10 9 34 34 H 1.09005 * 109.47194 * 299.99816 * 12 11 10 35 35 H 1.09001 * 109.47602 * 59.99931 * 12 11 10 36 36 H 0.96999 * 119.99873 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0942 0.0000 4 7 3.5845 0.6705 0.0028 5 6 4.7746 1.5247 0.0069 6 7 3.5754 -0.7302 -0.0045 7 6 2.3299 -1.1310 -0.0062 8 6 1.8627 -2.5637 -0.0141 9 16 1.6751 -3.1291 -1.7276 10 6 1.1156 -4.8435 -1.5327 11 6 0.9073 -5.4719 -2.9120 12 6 0.4347 -6.9178 -2.7476 13 6 0.2302 -7.5370 -4.1062 14 1 0.4180 -6.9571 -4.9978 15 6 -0.1967 -8.8439 -4.2111 16 7 -0.4260 -9.5498 -3.1255 17 14 -0.4495 -9.6115 -5.8952 18 1 -0.1260 -8.6148 -6.9472 19 1 0.4403 -10.7915 -6.0399 20 1 -1.8648 -10.0385 -6.0370 21 1 -0.3633 -0.0056 1.0277 22 1 -0.3633 -0.8872 -0.5187 23 1 -0.3633 0.8928 -0.5090 24 1 1.9724 2.1223 0.0004 25 1 5.0697 1.7416 -1.0198 26 1 4.5509 2.4571 0.5253 27 1 5.5887 1.0111 0.5182 28 1 2.5962 -3.1880 0.4961 29 1 0.9039 -2.6361 0.4993 30 1 1.8674 -5.4110 -0.9843 31 1 0.1754 -4.8584 -0.9814 32 1 0.1552 -4.9044 -3.4601 33 1 1.8472 -5.4570 -3.4638 34 1 1.1865 -7.4857 -2.1994 35 1 -0.5053 -6.9324 -2.1961 36 1 -0.7267 -10.4691 -3.1992 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120250303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:21 Heat of formation + Delta-G solvation = 32.474513 kcal Electronic energy + Delta-G solvation = -15512.620231 eV Core-core repulsion = 12930.189331 eV Total energy + Delta-G solvation = -2582.430900 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.22079 -36.35296 -35.21859 -34.03684 -32.74348 -30.78499 -29.39461 -28.18031 -25.66662 -25.14977 -22.19240 -21.70493 -20.58160 -18.55683 -17.57752 -17.08459 -16.61573 -16.35434 -16.26780 -15.51229 -15.09927 -14.69295 -14.43776 -14.16216 -14.06452 -13.84646 -13.51047 -13.37415 -13.17293 -13.00095 -12.75214 -12.74883 -12.67101 -12.33933 -11.65332 -11.52079 -11.47326 -11.21269 -10.89825 -10.56146 -10.18670 -9.22426 -8.66085 -8.20727 -6.31525 0.30979 1.06206 1.40792 1.40930 1.54273 1.55629 1.65835 2.01265 2.41713 3.12667 3.44332 3.74317 4.06000 4.09561 4.12565 4.13913 4.40776 4.43086 4.49387 4.60292 4.61986 4.69167 4.83345 4.93119 4.98481 5.01250 5.14492 5.18342 5.31708 5.49903 5.63711 5.69483 5.83086 6.16928 6.23309 6.68361 6.84206 7.37555 8.91329 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.050120 B = 0.003121 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.523316 B = 8968.412336 C = 9109.147766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.245 4.245 3 C 0.059 3.941 4 N -0.376 5.376 5 C 0.094 3.906 6 N -0.324 5.324 7 C 0.072 3.928 8 C 0.001 3.999 9 S -0.274 6.274 10 C -0.068 4.068 11 C -0.080 4.080 12 C 0.031 3.969 13 C -0.544 4.544 14 H 0.058 0.942 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.965 3.035 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.276 1.276 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.078 0.922 24 H 0.216 0.784 25 H 0.083 0.917 26 H 0.123 0.877 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.051 0.949 34 H -0.004 1.004 35 H 0.000 1.000 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.468 24.993 9.099 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.257 4.257 3 C -0.087 4.087 4 N -0.159 5.159 5 C -0.046 4.046 6 N -0.149 5.149 7 C -0.093 4.093 8 C -0.148 4.148 9 S -0.047 6.047 10 C -0.217 4.217 11 C -0.119 4.119 12 C -0.008 4.008 13 C -0.582 4.582 14 H 0.076 0.924 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.790 3.210 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.201 1.201 21 H 0.089 0.911 22 H 0.074 0.926 23 H 0.097 0.903 24 H 0.233 0.767 25 H 0.101 0.899 26 H 0.141 0.859 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.133 0.867 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.015 0.985 35 H 0.018 0.982 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.987 25.169 8.248 27.392 hybrid contribution -0.985 -1.312 0.418 1.693 sum 6.002 23.857 8.667 26.082 Atomic orbital electron populations 1.20109 0.87820 1.02918 1.02217 1.20371 0.98454 0.90981 1.15890 1.22949 0.83277 1.01322 1.01144 1.48755 1.07416 1.03775 1.55953 1.22219 0.84357 0.93476 1.04554 1.77249 1.20848 0.91005 1.25812 1.21437 0.91161 0.95009 1.01706 1.21502 1.05157 0.92462 0.95672 1.87084 1.89394 1.15613 1.12591 1.23398 1.03765 0.92632 1.01872 1.21162 1.00611 0.96310 0.93821 1.18983 0.94935 0.90955 0.95899 1.21695 1.44995 0.97816 0.93718 0.92396 1.25962 0.95002 0.97848 1.00909 1.70091 1.47193 1.09949 1.29991 0.85391 0.77959 0.78318 0.79349 1.18785 1.20284 1.20141 0.91057 0.92614 0.90313 0.76707 0.89874 0.85898 0.89476 0.88969 0.86670 0.90261 0.89488 0.92477 0.92979 0.98547 0.98200 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 10.04 71.24 0.71 -0.55 16 2 C -0.24 -5.38 6.10 -20.14 -0.12 -5.51 16 3 C 0.06 1.00 11.40 83.54 0.95 1.96 16 4 N -0.38 -7.56 4.01 -369.58 -1.48 -9.05 16 5 C 0.09 0.93 11.47 127.77 1.47 2.39 16 6 N -0.32 -9.28 12.58 -47.39 -0.60 -9.88 16 7 C 0.07 1.97 6.48 43.10 0.28 2.25 16 8 C 0.00 0.04 6.17 71.23 0.44 0.48 16 9 S -0.27 -9.09 21.72 -56.49 -1.23 -10.32 16 10 C -0.07 -2.45 5.94 71.98 0.43 -2.02 16 11 C -0.08 -3.48 5.16 30.59 0.16 -3.33 16 12 C 0.03 1.67 4.97 29.85 0.15 1.82 16 13 C -0.54 -31.72 9.11 25.60 0.23 -31.48 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.00 0.04 5.46 84.66 0.46 0.50 16 16 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 17 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 18 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.05 1.14 7.92 -2.39 -0.02 1.12 16 23 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.22 1.55 8.06 -2.91 -0.02 1.53 16 25 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 26 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.12 2.66 7.92 -2.39 -0.02 2.65 16 30 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.06 2.46 8.14 -2.38 -0.02 2.45 16 33 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 35 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -73.06 322.40 5.20 -67.86 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.03 Total: 4.71 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 5.16 Total: -33.49 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.79 Total: -75.77 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.23 Total: -10.32 kcal Total: -73.06 5.20 -67.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120250303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.339 kcal (2) G-P(sol) polarization free energy of solvation -73.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds