Wall clock time and date at job start Sun Mar 29 2020 23:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38324 * 119.87777 * 2 1 4 4 C 1.38017 * 120.11945 * 180.02562 * 3 2 1 5 5 C 1.39348 * 119.87801 * 359.97438 * 4 3 2 6 6 C 1.48380 * 120.11771 * 180.02562 * 5 4 3 7 7 C 1.39979 * 120.86657 * 359.97438 * 6 5 4 8 8 C 1.37897 * 119.19920 * 180.02562 * 7 6 5 9 9 N 1.31937 * 120.99108 * 0.02562 * 8 7 6 10 10 C 1.32544 * 121.90192 * 359.97438 * 9 8 7 11 11 N 1.38860 * 119.65721 * 179.72647 * 10 9 8 12 12 C 1.36898 * 120.00080 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00482 * 359.97438 * 12 11 10 14 14 C 1.38824 * 119.99956 * 180.02562 * 12 11 10 15 15 N 1.31567 * 119.99712 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00054 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47244 * 90.00421 * 16 14 12 18 18 H 1.48497 * 109.47059 * 210.00107 * 16 14 12 19 19 H 1.48499 * 109.47220 * 330.00088 * 16 14 12 20 20 C 1.39017 * 120.68736 * 0.02562 * 10 9 8 21 21 C 1.39337 * 119.75553 * 0.27634 * 5 4 3 22 22 C 1.38016 * 119.87961 * 359.44672 * 21 5 4 23 23 H 1.08994 * 109.47537 * 90.00050 * 1 2 3 24 24 H 1.09004 * 109.46806 * 210.00334 * 1 2 3 25 25 H 1.08993 * 109.47083 * 329.99760 * 1 2 3 26 26 H 1.07993 * 119.93634 * 359.97438 * 3 2 1 27 27 H 1.08003 * 120.05725 * 179.97438 * 4 3 2 28 28 H 1.07997 * 120.39627 * 0.02562 * 7 6 5 29 29 H 1.08004 * 119.49794 * 179.97438 * 8 7 6 30 30 H 0.97003 * 119.99810 * 0.02562 * 11 10 9 31 31 H 0.97001 * 119.99495 * 179.97438 * 15 14 12 32 32 H 1.07996 * 120.52642 * 179.97438 * 20 10 9 33 33 H 1.08004 * 120.06073 * 179.70339 * 21 5 4 34 34 H 1.07998 * 119.93856 * 180.24874 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1994 0.0000 4 6 3.5762 1.2052 -0.0005 5 6 4.2755 -0.0001 -0.0005 6 6 5.7593 -0.0001 -0.0005 7 6 6.4774 1.2015 -0.0011 8 6 7.8558 1.1614 -0.0016 9 7 8.5020 0.0111 -0.0021 10 6 7.8640 -1.1507 -0.0016 11 7 8.5910 -2.3338 -0.0079 12 6 7.9392 -3.5377 -0.0080 13 1 6.8597 -3.5674 -0.0028 14 6 8.6661 -4.7204 -0.0138 15 7 8.0397 -5.8774 -0.0134 16 14 10.5333 -4.6692 -0.0222 17 1 11.0345 -4.6586 1.3756 18 1 11.0581 -5.8661 -0.7272 19 1 10.9917 -3.4421 -0.7217 20 6 6.4746 -1.1971 -0.0011 21 6 3.5762 -1.2053 -0.0058 22 6 2.1960 -1.1994 0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5138 26 1 1.6531 2.1329 -0.0004 27 1 4.1132 2.1423 -0.0010 28 1 5.9581 2.1484 -0.0011 29 1 8.4147 2.0856 -0.0024 30 1 9.5606 -2.3071 -0.0123 31 1 8.5475 -6.7038 -0.0178 32 1 5.9574 -2.1452 -0.0011 33 1 4.1132 -2.1423 -0.0107 34 1 1.6531 -2.1330 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182476.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:03 Heat of formation + Delta-G solvation = 59.830990 kcal Electronic energy + Delta-G solvation = -17252.907110 eV Core-core repulsion = 14536.218525 eV Total energy + Delta-G solvation = -2716.688586 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = -1.75 seconds Orbital eigenvalues (eV) -39.67614 -38.57190 -35.46120 -33.67326 -32.13388 -30.89576 -30.57238 -28.77831 -26.54728 -24.81352 -22.95929 -22.45900 -21.12882 -20.23430 -18.29051 -17.17289 -15.88920 -15.50172 -15.05751 -14.70263 -14.55608 -13.95260 -13.79220 -13.62348 -13.39467 -13.15046 -12.96454 -12.44181 -12.23396 -12.19516 -12.10778 -11.43453 -11.31535 -10.97087 -10.69367 -10.47457 -10.45151 -10.00478 -9.53690 -8.87716 -8.74899 -8.53558 -7.78596 -7.16346 -6.55297 -3.87830 1.10746 1.61547 2.26680 2.56730 3.04380 3.06352 3.09607 3.97241 4.02720 4.51871 4.69664 4.90517 4.94939 5.08367 5.18618 5.22115 5.31081 5.51348 5.54962 5.62926 5.76818 5.81309 5.96364 6.17525 6.20182 6.24151 6.34368 6.52259 6.66077 6.72554 6.76237 6.91190 7.18681 7.25184 7.41040 7.55187 7.86265 8.46072 8.74420 9.15795 9.45161 10.55269 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.005279 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.581868 B = 5302.925591 C = 6396.355209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.126 4.126 4 C -0.104 4.104 5 C -0.038 4.038 6 C 0.029 3.971 7 C -0.287 4.287 8 C 0.157 3.843 9 N -0.580 5.580 10 C 0.374 3.626 11 N -0.565 5.565 12 C -0.305 4.305 13 H 0.119 0.881 14 C 0.044 3.956 15 N -0.872 5.872 16 Si 0.883 3.117 17 H -0.268 1.268 18 H -0.274 1.274 19 H -0.264 1.264 20 C -0.230 4.230 21 C -0.100 4.100 22 C -0.121 4.121 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.114 0.886 29 H 0.138 0.862 30 H 0.383 0.617 31 H 0.278 0.722 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.710 10.696 0.000 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.144 4.144 4 C -0.122 4.122 5 C -0.039 4.039 6 C 0.022 3.978 7 C -0.314 4.314 8 C -0.004 4.004 9 N -0.301 5.301 10 C 0.133 3.867 11 N -0.175 5.175 12 C -0.434 4.434 13 H 0.137 0.863 14 C -0.161 4.161 15 N -0.508 5.508 16 Si 0.709 3.291 17 H -0.193 1.193 18 H -0.199 1.199 19 H -0.190 1.190 20 C -0.257 4.257 21 C -0.118 4.118 22 C -0.139 4.139 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.137 0.863 27 H 0.143 0.857 28 H 0.132 0.868 29 H 0.155 0.845 30 H 0.218 0.782 31 H 0.088 0.912 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.825 10.048 -0.001 13.374 hybrid contribution 0.442 -0.183 -0.019 0.479 sum -8.383 9.865 -0.021 12.946 Atomic orbital electron populations 1.20765 0.91558 1.02472 1.02038 1.19930 0.95809 0.93319 1.00478 1.20895 0.94019 0.97268 1.02208 1.21230 0.93806 0.97687 0.99472 1.18878 0.92178 0.93164 0.99635 1.18684 0.90641 0.93309 0.95210 1.21278 0.95051 0.96911 1.18139 1.21889 0.91248 0.94319 0.92946 1.67005 1.40931 0.97441 1.24747 1.18029 0.88269 0.85740 0.94667 1.41020 1.07040 1.02553 1.66885 1.19399 0.94879 0.80663 1.48479 0.86331 1.24980 0.99266 0.94770 0.97088 1.69668 1.36402 0.97398 1.47302 0.86564 0.84490 0.78744 0.79342 1.19306 1.19916 1.18962 1.21309 0.93172 0.98069 1.13120 1.21416 0.93995 0.98245 0.98127 1.20969 0.94067 0.97433 1.01430 0.91429 0.91698 0.91832 0.86336 0.85677 0.86849 0.84454 0.78216 0.91163 0.85048 0.85153 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 2 C -0.10 -1.19 5.88 -104.56 -0.62 -1.80 16 3 C -0.13 -1.58 9.68 -39.63 -0.38 -1.96 16 4 C -0.10 -1.49 9.45 -39.25 -0.37 -1.86 16 5 C -0.04 -0.65 5.88 -104.90 -0.62 -1.27 16 6 C 0.03 0.55 5.91 -104.62 -0.62 -0.06 16 7 C -0.29 -5.07 9.50 -39.05 -0.37 -5.44 16 8 C 0.16 2.90 11.16 -17.63 -0.20 2.70 16 9 N -0.58 -12.68 10.38 -12.51 -0.13 -12.81 16 10 C 0.37 8.74 7.61 -155.08 -1.18 7.56 16 11 N -0.56 -13.79 5.25 -11.19 -0.06 -13.85 16 12 C -0.31 -8.00 10.02 -15.07 -0.15 -8.15 16 13 H 0.12 3.23 5.88 -52.49 -0.31 2.93 16 14 C 0.04 1.16 5.50 -17.45 -0.10 1.07 16 15 N -0.87 -23.94 13.97 55.49 0.77 -23.17 16 16 Si 0.88 19.55 27.73 -169.99 -4.71 14.83 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.26 -5.68 6.52 56.52 0.37 -5.31 16 20 C -0.23 -5.03 8.72 -38.84 -0.34 -5.37 16 21 C -0.10 -1.62 9.45 -39.25 -0.37 -1.99 16 22 C -0.12 -1.68 9.68 -39.63 -0.38 -2.06 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 25 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 27 H 0.13 1.58 6.29 -52.48 -0.33 1.25 16 28 H 0.11 1.65 6.34 -52.49 -0.33 1.32 16 29 H 0.14 2.02 8.06 -52.48 -0.42 1.59 16 30 H 0.38 9.01 5.88 -40.82 -0.24 8.77 16 31 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.13 2.92 4.21 -52.49 -0.22 2.70 16 33 H 0.13 2.19 6.30 -52.48 -0.33 1.86 16 34 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 288.19 15.07 4.34 4.34 Total: -1.00 -28.48 288.19 -8.58 -37.06 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -3.46 Total: 12.91 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -5.33 Total: -19.32 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.59 Total: -49.83 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.48 -8.58 -37.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182476.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.888 kcal (2) G-P(sol) polarization free energy of solvation -28.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.75 seconds