Wall clock time and date at job start Sun Mar 29 2020 23:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38324 * 119.87777 * 2 1 4 4 C 1.38017 * 120.11945 * 180.02562 * 3 2 1 5 5 C 1.39348 * 119.87801 * 359.97438 * 4 3 2 6 6 C 1.48380 * 120.11771 * 180.02562 * 5 4 3 7 7 C 1.39979 * 120.86657 * 359.97438 * 6 5 4 8 8 C 1.37897 * 119.19920 * 180.02562 * 7 6 5 9 9 N 1.31937 * 120.99108 * 0.02562 * 8 7 6 10 10 C 1.32544 * 121.90192 * 359.97438 * 9 8 7 11 11 N 1.38860 * 119.65721 * 179.72647 * 10 9 8 12 12 C 1.36898 * 120.00080 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00482 * 359.97438 * 12 11 10 14 14 C 1.38824 * 119.99956 * 180.02562 * 12 11 10 15 15 N 1.31567 * 119.99712 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00054 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47244 * 90.00421 * 16 14 12 18 18 H 1.48497 * 109.47059 * 210.00107 * 16 14 12 19 19 H 1.48499 * 109.47220 * 330.00088 * 16 14 12 20 20 C 1.39017 * 120.68736 * 0.02562 * 10 9 8 21 21 C 1.39337 * 119.75553 * 0.27634 * 5 4 3 22 22 C 1.38016 * 119.87961 * 359.44672 * 21 5 4 23 23 H 1.08994 * 109.47537 * 90.00050 * 1 2 3 24 24 H 1.09004 * 109.46806 * 210.00334 * 1 2 3 25 25 H 1.08993 * 109.47083 * 329.99760 * 1 2 3 26 26 H 1.07993 * 119.93634 * 359.97438 * 3 2 1 27 27 H 1.08003 * 120.05725 * 179.97438 * 4 3 2 28 28 H 1.07997 * 120.39627 * 0.02562 * 7 6 5 29 29 H 1.08004 * 119.49794 * 179.97438 * 8 7 6 30 30 H 0.97003 * 119.99810 * 0.02562 * 11 10 9 31 31 H 0.97001 * 119.99495 * 179.97438 * 15 14 12 32 32 H 1.07996 * 120.52642 * 179.97438 * 20 10 9 33 33 H 1.08004 * 120.06073 * 179.70339 * 21 5 4 34 34 H 1.07998 * 119.93856 * 180.24874 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1994 0.0000 4 6 3.5762 1.2052 -0.0005 5 6 4.2755 -0.0001 -0.0005 6 6 5.7593 -0.0001 -0.0005 7 6 6.4774 1.2015 -0.0011 8 6 7.8558 1.1614 -0.0016 9 7 8.5020 0.0111 -0.0021 10 6 7.8640 -1.1507 -0.0016 11 7 8.5910 -2.3338 -0.0079 12 6 7.9392 -3.5377 -0.0080 13 1 6.8597 -3.5674 -0.0028 14 6 8.6661 -4.7204 -0.0138 15 7 8.0397 -5.8774 -0.0134 16 14 10.5333 -4.6692 -0.0222 17 1 11.0345 -4.6586 1.3756 18 1 11.0581 -5.8661 -0.7272 19 1 10.9917 -3.4421 -0.7217 20 6 6.4746 -1.1971 -0.0011 21 6 3.5762 -1.2053 -0.0058 22 6 2.1960 -1.1994 0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5138 26 1 1.6531 2.1329 -0.0004 27 1 4.1132 2.1423 -0.0010 28 1 5.9581 2.1484 -0.0011 29 1 8.4147 2.0856 -0.0024 30 1 9.5606 -2.3071 -0.0123 31 1 8.5475 -6.7038 -0.0178 32 1 5.9574 -2.1452 -0.0011 33 1 4.1132 -2.1423 -0.0107 34 1 1.6531 -2.1330 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182476.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:00 Heat of formation + Delta-G solvation = 44.545160 kcal Electronic energy + Delta-G solvation = -17253.569954 eV Core-core repulsion = 14536.218525 eV Total energy + Delta-G solvation = -2717.351429 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13977 -39.88505 -37.20475 -34.99193 -33.99310 -32.04369 -31.85610 -30.42866 -27.64184 -26.64946 -24.38343 -23.73810 -22.54814 -21.59026 -20.11866 -18.69331 -17.42378 -17.01635 -16.52726 -16.08210 -15.86668 -15.33625 -15.16911 -15.13990 -14.71154 -14.56796 -14.35272 -14.01619 -13.68011 -13.35006 -13.05520 -13.02574 -12.69633 -12.41024 -12.12452 -12.08590 -11.99216 -11.58407 -10.98441 -10.71732 -10.19457 -9.86193 -9.08064 -8.89625 -8.49783 -5.89076 -0.19208 0.50233 0.65927 1.14586 1.26789 1.31902 1.35402 2.14665 2.74331 2.79763 2.97143 3.43131 3.67109 3.84459 4.03591 4.07275 4.11967 4.38282 4.48800 4.54532 4.59467 4.74289 4.85523 4.88782 4.92939 5.04691 5.17349 5.23008 5.30566 5.38747 5.45205 5.58117 5.68825 5.73315 5.91721 6.07653 6.12636 6.56982 6.96906 7.27781 7.67383 8.64955 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.005279 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.581868 B = 5302.925591 C = 6396.355209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.123 4.123 4 C -0.098 4.098 5 C -0.074 4.074 6 C 0.033 3.967 7 C -0.265 4.265 8 C 0.151 3.849 9 N -0.594 5.594 10 C 0.365 3.635 11 N -0.587 5.587 12 C -0.311 4.311 13 H 0.088 0.912 14 C -0.007 4.007 15 N -0.923 5.923 16 Si 0.950 3.050 17 H -0.262 1.262 18 H -0.269 1.269 19 H -0.255 1.255 20 C -0.264 4.264 21 C -0.121 4.121 22 C -0.132 4.132 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.157 0.843 27 H 0.149 0.851 28 H 0.158 0.842 29 H 0.185 0.815 30 H 0.384 0.616 31 H 0.280 0.720 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.015 14.763 -0.014 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.116 4.116 5 C -0.074 4.074 6 C 0.025 3.975 7 C -0.290 4.290 8 C -0.009 4.009 9 N -0.316 5.316 10 C 0.126 3.874 11 N -0.202 5.202 12 C -0.440 4.440 13 H 0.105 0.895 14 C -0.208 4.208 15 N -0.562 5.562 16 Si 0.772 3.228 17 H -0.187 1.187 18 H -0.193 1.193 19 H -0.179 1.179 20 C -0.291 4.291 21 C -0.139 4.139 22 C -0.150 4.150 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.175 0.825 27 H 0.167 0.833 28 H 0.176 0.824 29 H 0.202 0.798 30 H 0.220 0.780 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.159 14.194 -0.015 17.455 hybrid contribution 0.500 -1.062 -0.013 1.174 sum -9.660 13.132 -0.027 16.302 Atomic orbital electron populations 1.20856 0.88728 1.03898 1.03291 1.20411 0.97863 0.92614 0.97714 1.21348 0.93458 0.98769 1.00513 1.21498 0.94811 0.97131 0.98196 1.18906 0.90964 0.94591 1.02914 1.19087 0.92371 0.92887 0.93143 1.21839 0.95019 0.97893 1.14214 1.22762 0.92218 0.94693 0.91177 1.67084 1.41657 0.97821 1.24991 1.18350 0.88779 0.86183 0.94045 1.40787 1.06854 1.02191 1.70403 1.19202 0.93813 0.82079 1.48946 0.89468 1.25707 1.03989 0.94071 0.96995 1.69786 1.38172 0.98057 1.50196 0.85538 0.78623 0.79048 0.79574 1.18704 1.19337 1.17928 1.21323 0.93132 0.98771 1.15839 1.21396 0.95355 0.97497 0.99675 1.21192 0.93052 0.99191 1.01529 0.90075 0.91039 0.89771 0.82544 0.83348 0.82432 0.79778 0.78045 0.91042 0.87206 0.87832 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.01 71.24 0.71 -0.86 16 2 C -0.09 -1.87 5.88 -19.82 -0.12 -1.99 16 3 C -0.12 -2.55 9.68 22.24 0.22 -2.34 16 4 C -0.10 -2.47 9.45 22.48 0.21 -2.26 16 5 C -0.07 -2.45 5.88 -20.04 -0.12 -2.56 16 6 C 0.03 1.24 5.91 -19.86 -0.12 1.13 16 7 C -0.27 -8.48 9.50 22.61 0.21 -8.26 16 8 C 0.15 5.09 11.16 84.60 0.94 6.04 16 9 N -0.59 -25.53 10.38 -193.49 -2.01 -27.54 16 10 C 0.37 17.63 7.61 133.04 1.01 18.64 16 11 N -0.59 -30.13 5.25 -189.31 -0.99 -31.12 16 12 C -0.31 -17.56 10.02 84.04 0.84 -16.72 16 13 H 0.09 5.31 5.88 -2.91 -0.02 5.29 16 14 C -0.01 -0.41 5.50 84.87 0.47 0.06 16 15 N -0.92 -53.99 13.97 21.65 0.30 -53.68 16 16 Si 0.95 41.92 27.73 68.60 1.90 43.82 16 17 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.25 -10.68 6.52 99.48 0.65 -10.03 16 20 C -0.26 -12.21 8.72 22.75 0.20 -12.01 16 21 C -0.12 -4.10 9.45 22.48 0.21 -3.89 16 22 C -0.13 -3.57 9.68 22.24 0.22 -3.35 16 23 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 25 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 26 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 27 H 0.15 2.93 6.29 -2.91 -0.02 2.91 16 28 H 0.16 3.66 6.34 -2.91 -0.02 3.64 16 29 H 0.19 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.38 18.65 5.88 -92.71 -0.54 18.10 16 31 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.11 5.48 4.21 -2.91 -0.01 5.47 16 33 H 0.10 3.96 6.30 -2.91 -0.02 3.94 16 34 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -66.68 288.19 4.63 -62.05 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: 0.53 Total: 34.86 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 4.90 Total: -28.39 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -2.70 Total: -112.35 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.90 Total: 43.82 kcal Total: -66.68 4.63 -62.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182476.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.596 kcal (2) G-P(sol) polarization free energy of solvation -66.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds