Wall clock time and date at job start Sun Mar 29 2020 23:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34801 * 119.64366 * 2 1 4 4 C 1.41998 * 119.23662 * 179.97438 * 3 2 1 5 5 N 1.33177 * 120.68901 * 179.97438 * 4 3 2 6 6 C 1.36337 * 120.00361 * 174.02753 * 5 4 3 7 7 C 1.40305 * 120.05105 * 93.31961 * 6 5 4 8 8 C 1.38250 * 120.31451 * 179.76213 * 7 6 5 9 9 C 1.37821 * 120.42664 * 0.51714 * 8 7 6 10 10 C 1.40863 * 120.09598 * 359.73873 * 9 8 7 11 11 C 1.41447 * 120.15580 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99403 * 334.74994 * 11 10 9 13 13 C 1.39872 * 120.00212 * 154.75391 * 11 10 9 14 14 N 1.30866 * 119.99908 * 344.77379 * 13 11 10 15 15 Si 1.86795 * 120.00068 * 164.77534 * 13 11 10 16 16 H 1.48502 * 109.47071 * 90.00129 * 15 13 11 17 17 H 1.48507 * 109.47026 * 209.99818 * 15 13 11 18 18 H 1.48497 * 109.47325 * 329.99992 * 15 13 11 19 19 C 1.39272 * 120.05351 * 273.59743 * 6 5 4 20 20 C 1.41996 * 118.62897 * 0.02562 * 4 3 2 21 21 C 1.34805 * 119.23668 * 359.97438 * 20 4 3 22 22 N 1.36066 * 119.64598 * 180.02562 * 2 1 3 23 23 H 0.97000 * 119.26262 * 359.97438 * 22 2 1 24 24 H 1.08997 * 109.47336 * 89.99799 * 1 2 3 25 25 H 1.09000 * 109.46709 * 209.99632 * 1 2 3 26 26 H 1.08993 * 109.46858 * 329.98973 * 1 2 3 27 27 H 1.08002 * 120.38263 * 0.25873 * 3 2 1 28 28 H 1.07995 * 119.84940 * 0.02562 * 7 6 5 29 29 H 1.07995 * 119.78691 * 180.25246 * 8 7 6 30 30 H 1.07997 * 119.95021 * 179.76260 * 9 8 7 31 31 H 0.96997 * 120.00208 * 180.02562 * 14 13 11 32 32 H 1.08002 * 120.20807 * 359.95189 * 19 6 5 33 33 H 1.08005 * 120.38295 * 180.02562 * 20 4 3 34 34 H 1.07995 * 119.64765 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1738 1.1716 0.0000 4 6 3.5937 1.1615 0.0006 5 7 4.2815 2.3019 0.0001 6 6 5.6391 2.2793 0.1234 7 6 6.4488 2.2719 -1.0224 8 6 7.8260 2.2540 -0.9036 9 6 8.4191 2.2324 0.3403 10 6 7.6231 2.2341 1.5024 11 6 8.2304 2.2125 2.7797 12 1 9.2198 1.7967 2.9001 13 6 7.5495 2.7296 3.8867 14 7 6.5003 3.4920 3.7120 15 14 8.1378 2.3319 5.6144 16 1 9.1189 3.3575 6.0516 17 1 6.9790 2.3278 6.5432 18 1 8.7831 0.9945 5.6221 19 6 6.2244 2.2577 1.3870 20 6 4.2652 -0.0897 0.0005 21 6 3.5401 -1.2261 0.0005 22 7 2.1801 -1.1826 -0.0005 23 1 1.6792 -2.0132 -0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8898 0.5140 27 1 1.6342 2.1072 0.0042 28 1 5.9941 2.2846 -2.0019 29 1 8.4411 2.2525 -1.7913 30 1 9.4956 2.2146 0.4241 31 1 6.0283 3.8510 4.4797 32 1 5.6059 2.2595 2.2725 33 1 5.3445 -0.1304 0.0014 34 1 4.0439 -2.1813 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174656051.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:47 Heat of formation + Delta-G solvation = 45.039084 kcal Electronic energy + Delta-G solvation = -17567.888455 eV Core-core repulsion = 14850.558444 eV Total energy + Delta-G solvation = -2717.330011 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.38990 -39.48074 -36.75177 -35.29457 -33.90904 -32.38597 -31.38688 -29.32317 -28.18137 -27.12445 -24.01184 -23.54566 -22.73168 -21.01237 -19.44774 -19.10420 -17.71533 -17.12035 -16.49280 -16.43959 -15.74052 -15.71524 -15.28556 -14.86150 -14.45839 -14.26904 -13.68816 -13.47457 -13.43799 -13.06311 -12.96867 -12.82175 -12.69613 -12.47739 -12.35253 -11.98814 -11.79104 -11.31324 -11.10919 -10.56921 -10.25727 -9.32904 -8.71363 -8.40990 -8.09858 -6.37307 0.45922 0.57139 0.98944 1.14712 1.33964 1.48453 1.53398 2.15903 2.20153 2.74138 2.79054 3.62480 3.75576 3.91649 4.22717 4.36812 4.42693 4.51954 4.61023 4.69039 4.81015 4.84891 4.94297 5.13696 5.18047 5.28035 5.31314 5.34254 5.54319 5.63377 5.92420 6.01228 6.07141 6.12820 6.25608 6.37933 6.53518 6.70408 6.95147 7.05120 7.68836 8.37244 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.006141 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.070597 B = 4558.464440 C = 5299.786279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.177 3.823 3 C -0.240 4.240 4 C 0.242 3.758 5 N -0.620 5.620 6 C 0.141 3.859 7 C -0.273 4.273 8 C -0.077 4.077 9 C -0.263 4.263 10 C 0.092 3.908 11 C -0.502 4.502 12 H 0.079 0.921 13 C 0.027 3.973 14 N -0.833 5.833 15 Si 0.989 3.011 16 H -0.259 1.259 17 H -0.268 1.268 18 H -0.253 1.253 19 C -0.210 4.210 20 C -0.293 4.293 21 C 0.164 3.836 22 N -0.583 5.583 23 H 0.440 0.560 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.134 0.866 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.101 0.899 31 H 0.284 0.716 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.429 -14.701 -3.864 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.065 3.935 3 C -0.267 4.267 4 C 0.076 3.924 5 N -0.335 5.335 6 C 0.040 3.960 7 C -0.294 4.294 8 C -0.095 4.095 9 C -0.283 4.283 10 C 0.089 3.911 11 C -0.531 4.531 12 H 0.097 0.903 13 C -0.186 4.186 14 N -0.459 5.459 15 Si 0.809 3.191 16 H -0.184 1.184 17 H -0.192 1.192 18 H -0.177 1.177 19 C -0.232 4.232 20 C -0.321 4.321 21 C 0.034 3.966 22 N -0.192 5.192 23 H 0.281 0.719 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.109 0.891 27 H 0.152 0.848 28 H 0.109 0.891 29 H 0.139 0.861 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -14.651 -13.554 -3.810 20.320 hybrid contribution 1.028 -0.118 0.661 1.228 sum -13.623 -13.673 -3.149 19.557 Atomic orbital electron populations 1.21111 0.84278 1.06074 1.05553 1.20629 0.96268 0.84512 0.92075 1.20365 0.90965 0.98743 1.16626 1.19753 0.94621 0.88974 0.89006 1.69121 1.06104 1.26777 1.31543 1.18671 0.89314 0.94973 0.92992 1.20759 0.93756 1.19331 0.95565 1.20686 0.93968 0.98246 0.96640 1.21144 0.97978 1.16556 0.92647 1.17881 0.91909 0.87718 0.93597 1.19838 1.03164 1.37294 0.92842 0.90261 1.26938 0.93880 0.91792 1.06011 1.70008 1.17787 1.23769 1.34383 0.85121 0.78795 0.80155 0.75038 1.18361 1.19226 1.17655 1.21361 0.94938 1.12505 0.94411 1.21578 1.00418 0.93652 1.16406 1.22013 0.82939 1.00108 0.91506 1.41245 1.05180 1.08997 1.63773 0.71939 0.87647 0.87598 0.89080 0.84784 0.89075 0.86053 0.88129 0.90604 0.89206 0.87554 0.77548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.08 71.24 0.72 -0.15 16 2 C 0.18 3.26 6.81 41.11 0.28 3.54 16 3 C -0.24 -7.61 9.61 22.41 0.22 -7.39 16 4 C 0.24 10.40 6.63 40.80 0.27 10.67 16 5 N -0.62 -33.71 10.40 -181.48 -1.89 -35.59 16 6 C 0.14 8.23 4.15 39.19 0.16 8.39 16 7 C -0.27 -14.90 9.97 22.78 0.23 -14.67 16 8 C -0.08 -3.98 10.01 22.17 0.22 -3.76 16 9 C -0.26 -14.80 9.79 22.81 0.22 -14.58 16 10 C 0.09 5.68 5.57 -21.33 -0.12 5.56 16 11 C -0.50 -30.03 9.06 23.46 0.21 -29.81 16 12 H 0.08 4.48 7.89 -2.91 -0.02 4.45 16 13 C 0.03 1.52 5.19 85.23 0.44 1.96 16 14 N -0.83 -49.89 10.85 21.81 0.24 -49.65 16 15 Si 0.99 41.63 29.59 68.60 2.03 43.65 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 17 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 18 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 19 C -0.21 -13.24 8.63 23.04 0.20 -13.04 16 20 C -0.29 -10.79 9.26 22.41 0.21 -10.58 16 21 C 0.16 3.43 11.17 83.25 0.93 4.36 16 22 N -0.58 -8.06 5.28 -183.22 -0.97 -9.02 16 23 H 0.44 1.35 8.78 -92.71 -0.81 0.54 16 24 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.09 0.80 8.07 -2.39 -0.02 0.78 16 27 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 28 H 0.09 4.69 8.06 -2.91 -0.02 4.66 16 29 H 0.12 5.26 8.06 -2.91 -0.02 5.23 16 30 H 0.10 5.23 8.06 -2.91 -0.02 5.20 16 31 H 0.28 15.41 8.30 -92.71 -0.77 14.64 16 32 H 0.09 6.06 6.11 -2.91 -0.02 6.04 16 33 H 0.11 4.70 7.03 -2.91 -0.02 4.68 16 34 H 0.21 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -89.80 296.09 3.90 -85.90 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.30 Total: 24.21 kcal Atomic # 6 Polarization: -63.69 SS G_CDS: 4.19 Total: -59.50 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -2.62 Total: -94.27 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -89.80 3.90 -85.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174656051.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.935 kcal (2) G-P(sol) polarization free energy of solvation -89.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds