Wall clock time and date at job start Sun Mar 29 2020 23:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38886 * 120.33116 * 2 1 4 4 C 1.38301 * 118.50621 * 180.02562 * 3 2 1 5 5 C 1.39140 * 119.09571 * 0.02562 * 4 3 2 6 6 N 1.39081 * 119.70635 * 179.97438 * 5 4 3 7 7 C 1.39769 * 120.00091 * 8.56641 * 6 5 4 8 8 C 1.39339 * 119.95001 * 220.06035 * 7 6 5 9 9 C 1.38481 * 120.42053 * 179.70107 * 8 7 6 10 10 C 1.37686 * 120.32877 * 0.24962 * 9 8 7 11 11 C 1.40756 * 119.89197 * 0.02712 * 10 9 8 12 12 C 1.41408 * 120.20335 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99509 * 214.27344 * 12 11 10 14 14 C 1.39922 * 120.00384 * 34.27929 * 12 11 10 15 15 N 1.30832 * 120.00093 * 11.45947 * 14 12 11 16 16 Si 1.86805 * 120.00248 * 191.45860 * 14 12 11 17 17 H 1.48505 * 109.46903 * 59.99882 * 16 14 12 18 18 H 1.48495 * 109.47324 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46980 * 299.99999 * 16 14 12 20 20 C 1.38281 * 119.95534 * 40.31110 * 7 6 5 21 21 N 1.32409 * 120.58581 * 0.27277 * 5 4 3 22 22 C 1.31957 * 121.62698 * 359.43758 * 21 5 4 23 23 H 1.09004 * 109.46681 * 90.00122 * 1 2 3 24 24 H 1.09001 * 109.46589 * 209.99660 * 1 2 3 25 25 H 1.08993 * 109.47142 * 330.00205 * 1 2 3 26 26 H 1.08004 * 120.74750 * 359.97438 * 3 2 1 27 27 H 1.08001 * 120.45361 * 180.02562 * 4 3 2 28 28 H 0.96996 * 120.00245 * 188.55978 * 6 5 4 29 29 H 1.07998 * 119.78889 * 359.97438 * 8 7 6 30 30 H 1.08000 * 119.83323 * 180.28008 * 9 8 7 31 31 H 1.08001 * 120.05301 * 180.02562 * 10 9 8 32 32 H 0.97004 * 120.00260 * 180.02562 * 15 14 12 33 33 H 1.08005 * 120.16173 * 0.02562 * 20 7 6 34 34 H 1.07997 * 119.57735 * 180.28656 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1988 0.0000 4 6 3.5907 1.1547 -0.0005 5 6 4.2283 -0.0820 -0.0016 6 7 5.6178 -0.1411 -0.0027 7 6 6.3670 1.0249 0.1776 8 6 7.5243 1.2308 -0.5707 9 6 8.2707 2.3854 -0.4044 10 6 7.8796 3.3409 0.5066 11 6 6.7160 3.1441 1.2738 12 6 6.3086 4.1208 2.2117 13 1 5.8293 3.8194 3.1314 14 6 6.5264 5.4776 1.9482 15 7 6.8964 5.8608 0.7532 16 14 6.2888 6.7420 3.3026 17 1 7.2115 6.4423 4.4270 18 1 6.5809 8.0975 2.7712 19 1 4.8858 6.6912 3.7866 20 6 5.9616 1.9701 1.1019 21 7 3.5238 -1.2032 -0.0075 22 6 2.2043 -1.1913 -0.0016 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3632 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.6861 2.1441 -0.0004 27 1 4.1675 2.0678 -0.0001 28 1 6.0670 -0.9916 -0.1285 29 1 7.8388 0.4873 -1.2880 30 1 9.1636 2.5373 -0.9926 31 1 8.4648 4.2398 0.6324 32 1 7.0478 6.8014 0.5706 33 1 5.0672 1.8096 1.6856 34 1 1.6628 -2.1257 -0.0020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211012332.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:45 Heat of formation + Delta-G solvation = 39.623480 kcal Electronic energy + Delta-G solvation = -17563.960281 eV Core-core repulsion = 14846.395432 eV Total energy + Delta-G solvation = -2717.564849 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.44072 -39.62434 -36.91357 -35.18598 -33.90027 -32.38655 -31.60326 -29.90542 -27.47121 -26.81990 -24.65039 -23.19800 -22.53812 -22.02329 -19.42899 -18.67258 -17.69519 -17.19903 -16.62156 -16.16175 -15.84808 -15.63695 -15.22474 -14.85373 -14.65173 -14.12294 -13.97905 -13.77001 -13.52987 -13.22672 -13.03986 -12.82643 -12.54085 -12.46066 -12.26455 -11.80326 -11.71076 -11.22706 -11.01082 -10.67712 -10.44940 -9.51376 -9.33100 -8.60738 -8.20539 -6.40670 0.27948 0.41195 0.94536 1.10007 1.39123 1.49778 1.51426 2.17938 2.24571 2.73372 2.96201 3.64493 3.76046 3.97151 4.17200 4.21845 4.28690 4.41505 4.56429 4.80625 4.93818 4.95100 5.00452 5.03653 5.09361 5.16244 5.22143 5.30337 5.36484 5.51666 5.76538 5.86848 5.94792 6.04334 6.11989 6.39039 6.64901 6.70106 6.93512 6.97177 7.23283 8.39348 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.020606 B = 0.006151 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.523575 B = 4550.868120 C = 5622.400873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.194 4.194 3 C -0.047 4.047 4 C -0.242 4.242 5 C 0.373 3.627 6 N -0.661 5.661 7 C 0.177 3.823 8 C -0.248 4.248 9 C -0.087 4.087 10 C -0.185 4.185 11 C 0.103 3.897 12 C -0.506 4.506 13 H 0.071 0.929 14 C 0.039 3.961 15 N -0.834 5.834 16 Si 0.979 3.021 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.262 1.262 20 C -0.247 4.247 21 N -0.556 5.556 22 C 0.130 3.870 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.146 0.854 27 H 0.124 0.876 28 H 0.412 0.588 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.287 0.713 33 H 0.092 0.908 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.612 -6.877 -1.555 11.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.198 4.198 3 C -0.073 4.073 4 C -0.266 4.266 5 C 0.140 3.860 6 N -0.287 5.287 7 C 0.082 3.918 8 C -0.270 4.270 9 C -0.106 4.106 10 C -0.205 4.205 11 C 0.101 3.899 12 C -0.536 4.536 13 H 0.089 0.911 14 C -0.175 4.175 15 N -0.461 5.461 16 Si 0.800 3.200 17 H -0.186 1.186 18 H -0.192 1.192 19 H -0.187 1.187 20 C -0.269 4.269 21 N -0.273 5.273 22 C -0.027 4.027 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.164 0.836 27 H 0.141 0.859 28 H 0.249 0.751 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.081 -7.346 -1.695 11.051 hybrid contribution 0.053 1.272 0.434 1.346 sum -8.028 -6.073 -1.260 10.145 Atomic orbital electron populations 1.20620 0.87592 1.03782 1.03077 1.20998 0.99230 0.92978 1.06587 1.21554 0.92366 0.99667 0.93725 1.21980 0.96695 0.98067 1.09892 1.18437 0.85118 0.89843 0.92563 1.41759 1.01572 1.08959 1.76422 1.17413 0.92508 0.86756 0.95089 1.20513 0.99870 1.00835 1.05752 1.20820 0.98985 0.93335 0.97475 1.21219 0.97986 0.99418 1.01854 1.17719 0.89748 0.91135 0.91328 1.19665 1.37416 0.91677 1.04869 0.91123 1.26609 0.91869 1.01023 0.97961 1.69837 1.35448 1.19068 1.21707 0.85304 0.79792 0.76532 0.78391 1.18557 1.19156 1.18661 1.20996 1.02716 0.99442 1.03761 1.67134 1.10121 1.28944 1.21059 1.22876 0.87637 0.99074 0.93150 0.90359 0.89794 0.91225 0.83626 0.85854 0.75073 0.86013 0.85959 0.88481 0.90258 0.88980 0.79565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 10.03 71.24 0.71 -0.83 16 2 C -0.19 -4.98 5.90 -19.76 -0.12 -5.09 16 3 C -0.05 -1.48 9.85 22.44 0.22 -1.26 16 4 C -0.24 -9.48 7.99 22.50 0.18 -9.30 16 5 C 0.37 14.42 7.41 133.03 0.99 15.41 16 6 N -0.66 -25.74 5.49 -185.61 -1.02 -26.76 16 7 C 0.18 7.87 5.89 38.15 0.22 8.09 16 8 C -0.25 -10.53 9.97 22.59 0.23 -10.30 16 9 C -0.09 -3.91 10.01 22.20 0.22 -3.68 16 10 C -0.18 -9.54 8.63 22.76 0.20 -9.34 16 11 C 0.10 5.57 5.47 -21.31 -0.12 5.45 16 12 C -0.51 -27.42 9.03 23.46 0.21 -27.20 16 13 H 0.07 3.75 7.87 -2.91 -0.02 3.72 16 14 C 0.04 1.98 5.20 85.25 0.44 2.43 16 15 N -0.83 -43.64 11.27 21.82 0.25 -43.40 16 16 Si 0.98 38.47 29.57 68.60 2.03 40.50 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 18 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 C -0.25 -12.30 7.08 22.86 0.16 -12.13 16 21 N -0.56 -19.07 10.39 -193.19 -2.01 -21.08 16 22 C 0.13 3.51 10.85 84.63 0.92 4.43 16 23 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 25 H 0.07 1.08 8.09 -2.39 -0.02 1.07 16 26 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 27 H 0.12 5.61 5.34 -2.91 -0.02 5.59 16 28 H 0.41 14.08 8.95 -92.71 -0.83 13.25 16 29 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 30 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 31 H 0.10 5.22 6.68 -2.91 -0.02 5.20 16 32 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 33 H 0.09 4.64 6.54 -2.91 -0.02 4.62 16 34 H 0.19 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -61.07 291.59 4.01 -57.06 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: 0.29 Total: 37.01 kcal Atomic # 6 Polarization: -47.81 SS G_CDS: 4.47 Total: -43.34 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -2.78 Total: -91.24 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -61.07 4.01 -57.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211012332.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.680 kcal (2) G-P(sol) polarization free energy of solvation -61.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds