Wall clock time and date at job start Sun Mar 29 2020 23:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30000 * 126.21762 * 2 1 4 4 O 1.21287 * 110.45716 * 179.97438 * 3 2 1 5 5 C 1.34005 * 109.75569 * 0.02562 * 4 3 2 6 6 N 1.37967 * 126.65305 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99845 * 0.02562 * 6 5 4 8 8 O 1.21561 * 119.99766 * 359.97438 * 7 6 5 9 9 N 1.34769 * 119.99873 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00125 * 359.97438 * 9 7 6 11 11 C 1.46500 * 120.00163 * 179.97438 * 9 7 6 12 12 H 1.09001 * 109.46596 * 0.02562 * 11 9 7 13 13 C 1.53006 * 109.47249 * 119.99832 * 11 9 7 14 14 C 1.50698 * 109.47583 * 240.00268 * 11 9 7 15 15 H 1.08004 * 119.99528 * 359.97438 * 14 11 9 16 16 C 1.37876 * 120.00356 * 180.02562 * 14 11 9 17 17 N 1.31518 * 119.99554 * 359.97438 * 16 14 11 18 18 Si 1.86790 * 120.00086 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47337 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47146 * 119.99673 * 18 16 14 21 21 H 1.48499 * 109.47460 * 239.99758 * 18 16 14 22 22 N 1.32015 * 106.69411 * 0.25556 * 5 4 3 23 23 H 1.09002 * 109.46642 * 89.97441 * 1 2 3 24 24 H 1.08994 * 109.47406 * 209.97088 * 1 2 3 25 25 H 1.09002 * 109.46962 * 329.97376 * 1 2 3 26 26 H 0.96997 * 119.99903 * 180.02562 * 6 5 4 27 27 H 1.08993 * 109.47565 * 270.00429 * 10 9 7 28 28 H 1.09007 * 109.46761 * 30.00462 * 10 9 7 29 29 H 1.09006 * 109.47241 * 149.99970 * 10 9 7 30 30 H 1.09001 * 109.47002 * 60.00085 * 13 11 9 31 31 H 1.08993 * 109.46955 * 180.02562 * 13 11 9 32 32 H 1.09000 * 109.47050 * 300.00351 * 13 11 9 33 33 H 0.97005 * 119.99198 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2751 1.0488 0.0000 4 8 3.4424 0.7194 0.0005 5 6 3.5358 -0.6174 0.0003 6 7 4.6973 -1.3619 0.0003 7 6 5.8945 -0.7428 0.0009 8 8 5.9508 0.4715 0.0011 9 7 7.0292 -1.4701 0.0014 10 6 6.9613 -2.9335 0.0018 11 6 8.3305 -0.7972 0.0015 12 1 8.1812 0.2825 0.0017 13 6 9.1145 -1.2033 1.2511 14 6 9.1034 -1.1977 -1.2286 15 1 8.6688 -1.8852 -1.9393 16 6 10.3656 -0.6875 -1.4464 17 7 10.8949 0.1492 -0.5806 18 14 11.3238 -1.1846 -2.9708 19 1 10.5126 -2.1302 -3.7789 20 1 11.6286 0.0231 -3.7795 21 1 12.5921 -1.8422 -2.5658 22 7 2.3008 -1.0838 -0.0060 23 1 -0.3633 0.0005 -1.0277 24 1 -0.3634 -0.8902 0.5133 25 1 -0.3633 0.8898 0.5143 26 1 4.6523 -2.3308 -0.0002 27 1 6.9441 -3.2962 1.0294 28 1 6.0555 -3.2553 -0.5123 29 1 7.8336 -3.3379 -0.5118 30 1 9.2638 -2.2830 1.2515 31 1 10.0825 -0.7023 1.2514 32 1 8.5556 -0.9135 2.1409 33 1 11.7828 0.5084 -0.7341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216188863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:33 Heat of formation + Delta-G solvation = 57.200177 kcal Electronic energy + Delta-G solvation = -18870.379530 eV Core-core repulsion = 15742.727601 eV Total energy + Delta-G solvation = -3127.651929 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.26587 -40.10905 -36.20540 -35.85240 -34.97949 -33.01580 -31.52479 -29.41045 -28.90633 -26.46780 -25.32246 -23.85100 -23.27776 -21.01218 -19.39881 -18.56614 -18.00032 -17.47406 -16.56005 -16.11062 -15.32564 -15.14657 -14.38857 -13.91519 -13.63661 -13.39876 -13.07346 -12.96088 -12.67961 -12.13401 -11.87531 -11.82937 -11.66258 -11.15146 -10.94667 -10.91798 -10.82912 -10.74167 -10.37854 -10.26013 -9.82556 -9.29289 -8.92311 -8.52631 -7.85841 -6.16395 -4.25088 1.36822 1.93530 2.29484 3.21673 3.26039 3.30789 3.33470 3.51042 3.91381 4.19536 4.33696 4.56388 5.15779 5.28139 5.31592 5.36691 5.39768 5.78736 5.83521 5.92559 6.12057 6.29574 6.41748 6.67712 6.79254 6.94535 7.21858 7.46679 7.60738 7.90204 8.04532 8.25514 8.45954 8.67732 8.83735 9.41647 10.89128 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.040664 B = 0.004768 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.412462 B = 5871.677541 C = 5941.271209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.184 3.816 3 N -0.395 5.395 4 O 0.088 5.912 5 C 0.441 3.559 6 N -0.620 5.620 7 C 0.690 3.310 8 O -0.550 6.550 9 N -0.589 5.589 10 C 0.076 3.924 11 C 0.270 3.730 12 H 0.068 0.932 13 C -0.148 4.148 14 C -0.531 4.531 15 H 0.062 0.938 16 C 0.066 3.934 17 N -0.885 5.885 18 Si 0.901 3.099 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.283 1.283 22 N -0.525 5.525 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.431 0.569 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.032 0.968 31 H 0.097 0.903 32 H 0.013 0.987 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.518 -6.382 2.079 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.090 4.090 3 N -0.112 5.112 4 O 0.038 5.962 5 C 0.131 3.869 6 N -0.285 5.285 7 C 0.391 3.609 8 O -0.423 6.423 9 N -0.323 5.323 10 C -0.068 4.068 11 C 0.171 3.829 12 H 0.086 0.914 13 C -0.206 4.206 14 C -0.569 4.569 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.523 5.523 18 Si 0.729 3.271 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.209 1.209 22 N -0.271 5.271 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.274 0.726 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.051 0.949 31 H 0.115 0.885 32 H 0.032 0.968 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.695 -4.863 2.107 14.685 hybrid contribution 0.837 -1.001 -0.840 1.552 sum -12.858 -5.864 1.267 14.189 Atomic orbital electron populations 1.20087 0.83007 1.04414 1.04106 1.25492 1.00060 0.83504 0.99932 1.74661 0.88941 1.23023 1.24605 1.85655 1.21671 1.21402 1.67517 1.23845 0.87831 0.82081 0.93129 1.42043 1.00611 1.10148 1.75693 1.16015 0.79643 0.85900 0.79353 1.91028 1.84470 1.10992 1.55816 1.47703 1.05536 1.06029 1.73044 1.21708 1.02796 0.81179 1.01083 1.19079 0.74784 0.94565 0.94485 0.91393 1.22118 1.03078 0.99825 0.95602 1.21319 1.00594 1.28667 1.06364 0.91979 1.24882 0.97297 0.94678 0.96797 1.69886 1.16688 1.30470 1.35220 0.86396 0.79667 0.78446 0.82616 1.19789 1.20837 1.20875 1.72181 0.97010 1.28312 1.29605 0.89471 0.89212 0.89591 0.72626 0.93026 0.93219 0.88872 0.94921 0.88480 0.96771 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.51 36.01 0.38 -0.14 16 2 C 0.18 2.66 8.21 -156.47 -1.28 1.38 16 3 N -0.40 -6.85 12.15 31.13 0.38 -6.47 16 4 O 0.09 1.69 9.69 -4.44 -0.04 1.65 16 5 C 0.44 7.50 8.99 -87.10 -0.78 6.72 16 6 N -0.62 -9.81 5.23 -17.65 -0.09 -9.91 16 7 C 0.69 13.89 8.24 -86.92 -0.72 13.17 16 8 O -0.55 -13.43 14.47 -16.30 -0.24 -13.67 16 9 N -0.59 -11.65 2.75 -181.01 -0.50 -12.15 16 10 C 0.08 1.11 9.20 59.85 0.55 1.66 16 11 C 0.27 6.53 2.64 -69.08 -0.18 6.35 16 12 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 13 C -0.15 -3.32 8.97 37.16 0.33 -2.99 16 14 C -0.53 -13.60 7.99 -34.44 -0.28 -13.87 16 15 H 0.06 1.55 7.33 -52.48 -0.38 1.17 16 16 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.88 -24.14 11.32 55.43 0.63 -23.51 16 18 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 N -0.53 -8.06 11.59 -12.96 -0.15 -8.21 16 23 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.43 5.20 6.55 -40.82 -0.27 4.93 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.55 6.36 -51.92 -0.33 0.22 16 29 H 0.09 1.45 7.02 -51.93 -0.36 1.09 16 30 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 31 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 285.02 15.07 4.30 4.30 Total: -1.00 -31.22 285.02 -6.48 -37.70 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -3.67 Total: 1.06 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: -2.07 Total: 13.92 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.26 Total: -60.25 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.28 Total: -12.02 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.22 -6.48 -37.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216188863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.900 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds