Wall clock time and date at job start Sun Mar 29 2020 23:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30000 * 126.21762 * 2 1 4 4 O 1.21287 * 110.45716 * 179.97438 * 3 2 1 5 5 C 1.34005 * 109.75569 * 0.02562 * 4 3 2 6 6 N 1.37967 * 126.65305 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99845 * 0.02562 * 6 5 4 8 8 O 1.21561 * 119.99766 * 359.97438 * 7 6 5 9 9 N 1.34769 * 119.99873 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00125 * 359.97438 * 9 7 6 11 11 C 1.46500 * 120.00163 * 179.97438 * 9 7 6 12 12 H 1.09001 * 109.46596 * 0.02562 * 11 9 7 13 13 C 1.53006 * 109.47249 * 119.99832 * 11 9 7 14 14 C 1.50698 * 109.47583 * 240.00268 * 11 9 7 15 15 H 1.08004 * 119.99528 * 359.97438 * 14 11 9 16 16 C 1.37876 * 120.00356 * 180.02562 * 14 11 9 17 17 N 1.31518 * 119.99554 * 359.97438 * 16 14 11 18 18 Si 1.86790 * 120.00086 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47337 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47146 * 119.99673 * 18 16 14 21 21 H 1.48499 * 109.47460 * 239.99758 * 18 16 14 22 22 N 1.32015 * 106.69411 * 0.25556 * 5 4 3 23 23 H 1.09002 * 109.46642 * 89.97441 * 1 2 3 24 24 H 1.08994 * 109.47406 * 209.97088 * 1 2 3 25 25 H 1.09002 * 109.46962 * 329.97376 * 1 2 3 26 26 H 0.96997 * 119.99903 * 180.02562 * 6 5 4 27 27 H 1.08993 * 109.47565 * 270.00429 * 10 9 7 28 28 H 1.09007 * 109.46761 * 30.00462 * 10 9 7 29 29 H 1.09006 * 109.47241 * 149.99970 * 10 9 7 30 30 H 1.09001 * 109.47002 * 60.00085 * 13 11 9 31 31 H 1.08993 * 109.46955 * 180.02562 * 13 11 9 32 32 H 1.09000 * 109.47050 * 300.00351 * 13 11 9 33 33 H 0.97005 * 119.99198 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2751 1.0488 0.0000 4 8 3.4424 0.7194 0.0005 5 6 3.5358 -0.6174 0.0003 6 7 4.6973 -1.3619 0.0003 7 6 5.8945 -0.7428 0.0009 8 8 5.9508 0.4715 0.0011 9 7 7.0292 -1.4701 0.0014 10 6 6.9613 -2.9335 0.0018 11 6 8.3305 -0.7972 0.0015 12 1 8.1812 0.2825 0.0017 13 6 9.1145 -1.2033 1.2511 14 6 9.1034 -1.1977 -1.2286 15 1 8.6688 -1.8852 -1.9393 16 6 10.3656 -0.6875 -1.4464 17 7 10.8949 0.1492 -0.5806 18 14 11.3238 -1.1846 -2.9708 19 1 10.5126 -2.1302 -3.7789 20 1 11.6286 0.0231 -3.7795 21 1 12.5921 -1.8422 -2.5658 22 7 2.3008 -1.0838 -0.0060 23 1 -0.3633 0.0005 -1.0277 24 1 -0.3634 -0.8902 0.5133 25 1 -0.3633 0.8898 0.5143 26 1 4.6523 -2.3308 -0.0002 27 1 6.9441 -3.2962 1.0294 28 1 6.0555 -3.2553 -0.5123 29 1 7.8336 -3.3379 -0.5118 30 1 9.2638 -2.2830 1.2515 31 1 10.0825 -0.7023 1.2514 32 1 8.5556 -0.9135 2.1409 33 1 11.7828 0.5084 -0.7341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216188863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:32 Heat of formation + Delta-G solvation = 35.289516 kcal Electronic energy + Delta-G solvation = -18871.329647 eV Core-core repulsion = 15742.727601 eV Total energy + Delta-G solvation = -3128.602047 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.52147 -41.66800 -37.73137 -37.23985 -36.45192 -34.83434 -32.84294 -31.08915 -29.92869 -27.81713 -27.29256 -25.22954 -24.61485 -22.57133 -20.90887 -19.97520 -19.28899 -18.95805 -18.33541 -17.52217 -17.06150 -16.71930 -16.16405 -15.11392 -14.87319 -14.59191 -14.41792 -14.23717 -13.83665 -13.55115 -13.24827 -13.18592 -13.14114 -12.93490 -12.71517 -12.66440 -12.21571 -12.14277 -12.10433 -11.93386 -11.52215 -11.18450 -10.52834 -10.29670 -9.46909 -8.14549 -6.30469 0.04127 0.58822 1.10269 1.43762 1.46580 1.56652 1.90038 1.96740 2.42071 2.69140 3.06919 3.15249 3.36811 4.26763 4.39612 4.48069 4.66424 4.67155 4.70971 4.77507 4.90854 4.96246 4.98479 5.04369 5.15827 5.26288 5.45746 5.60840 5.76121 6.03595 6.14043 6.64892 6.76656 7.13597 7.20305 7.41590 8.90409 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.040664 B = 0.004768 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.412462 B = 5871.677541 C = 5941.271209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.195 3.805 3 N -0.421 5.421 4 O 0.047 5.953 5 C 0.431 3.569 6 N -0.597 5.597 7 C 0.692 3.308 8 O -0.601 6.601 9 N -0.592 5.592 10 C 0.068 3.932 11 C 0.275 3.725 12 H 0.015 0.985 13 C -0.134 4.134 14 C -0.539 4.539 15 H 0.067 0.933 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 0.965 3.035 19 H -0.263 1.263 20 H -0.289 1.289 21 H -0.275 1.275 22 N -0.515 5.515 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.100 0.900 26 H 0.450 0.550 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.022 0.978 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.122 -8.694 1.624 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 N -0.144 5.144 4 O 0.003 5.997 5 C 0.121 3.879 6 N -0.264 5.264 7 C 0.392 3.608 8 O -0.478 6.478 9 N -0.325 5.325 10 C -0.074 4.074 11 C 0.173 3.827 12 H 0.033 0.967 13 C -0.192 4.192 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.790 3.210 19 H -0.187 1.187 20 H -0.215 1.215 21 H -0.201 1.201 22 N -0.261 5.261 23 H 0.126 0.874 24 H 0.130 0.870 25 H 0.119 0.881 26 H 0.297 0.703 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.303 -7.263 1.657 17.020 hybrid contribution 1.202 -0.302 -0.679 1.413 sum -14.101 -7.565 0.979 16.032 Atomic orbital electron populations 1.20434 0.79027 1.06209 1.05955 1.26558 1.02026 0.82407 0.96853 1.74698 0.88638 1.24254 1.26779 1.85628 1.22899 1.22524 1.68646 1.24121 0.88469 0.81797 0.93529 1.41542 0.99167 1.10741 1.74964 1.16044 0.80624 0.85248 0.78889 1.90998 1.85465 1.13483 1.57882 1.47533 1.04077 1.08148 1.72730 1.22047 1.04407 0.77545 1.03379 1.18664 0.76799 0.92191 0.95001 0.96682 1.21903 1.01447 1.00713 0.95161 1.21595 1.00772 1.28452 1.06909 0.91492 1.25691 0.98401 0.94690 0.99481 1.70027 1.16996 1.31528 1.36903 0.85401 0.78543 0.77874 0.79135 1.18736 1.21540 1.20062 1.72252 0.96200 1.28444 1.29215 0.87381 0.87043 0.88144 0.70345 0.90312 0.89405 0.89629 0.92819 0.91156 0.95901 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.51 71.24 0.75 -0.10 16 2 C 0.20 5.29 8.21 138.50 1.14 6.43 16 3 N -0.42 -14.49 12.15 -58.98 -0.72 -15.20 16 4 O 0.05 1.84 9.69 92.17 0.89 2.73 16 5 C 0.43 14.38 8.99 179.12 1.61 15.99 16 6 N -0.60 -18.22 5.23 -438.69 -2.29 -20.52 16 7 C 0.69 27.95 8.24 179.06 1.47 29.43 16 8 O -0.60 -30.64 14.47 16.76 0.24 -30.40 16 9 N -0.59 -23.09 2.75 -844.86 -2.33 -25.41 16 10 C 0.07 1.79 9.20 127.77 1.18 2.96 16 11 C 0.27 13.54 2.64 44.25 0.12 13.65 16 12 H 0.02 0.91 6.90 -2.39 -0.02 0.89 16 13 C -0.13 -6.04 8.97 71.98 0.65 -5.40 16 14 C -0.54 -27.68 7.99 25.60 0.20 -27.48 16 15 H 0.07 3.30 7.33 -2.91 -0.02 3.28 16 16 C 0.02 0.91 5.30 84.65 0.45 1.36 16 17 N -0.92 -51.11 11.32 21.45 0.24 -50.86 16 18 Si 0.97 41.56 29.54 68.60 2.03 43.58 16 19 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 22 N -0.52 -14.82 11.59 -311.86 -3.61 -18.43 16 23 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 25 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.45 9.65 6.55 -92.71 -0.61 9.05 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 1.62 6.36 -2.38 -0.02 1.61 16 29 H 0.08 2.45 7.02 -2.38 -0.02 2.43 16 30 H 0.05 2.14 7.67 -2.39 -0.02 2.13 16 31 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -70.68 285.02 2.56 -68.12 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.54 Total: 9.54 kcal Atomic # 6 Polarization: 29.28 SS G_CDS: 7.56 Total: 36.84 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -8.71 Total: -130.43 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: 1.14 Total: -27.67 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -70.68 2.56 -68.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216188863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.413 kcal (2) G-P(sol) polarization free energy of solvation -70.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds