Wall clock time and date at job start Sun Mar 29 2020 23:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38395 * 119.44875 * 2 1 4 4 C 1.38320 * 119.31670 * 179.74753 * 3 2 1 5 5 C 1.40095 * 118.28002 * 0.47079 * 4 3 2 6 6 C 1.47825 * 120.56339 * 179.80011 * 5 4 3 7 7 N 1.32574 * 119.98879 * 128.50449 * 6 5 4 8 8 C 1.31744 * 121.72220 * 180.02562 * 7 6 5 9 9 C 1.38869 * 121.50627 * 359.95641 * 8 7 6 10 10 C 1.36889 * 119.79486 * 0.02562 * 9 8 7 11 11 C 1.41111 * 118.39543 * 359.97438 * 10 9 8 12 12 C 1.40889 * 120.71759 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99790 * 153.64565 * 12 11 10 14 14 C 1.40072 * 120.00226 * 333.64941 * 12 11 10 15 15 N 1.30773 * 119.99651 * 343.60767 * 14 12 11 16 16 Si 1.86800 * 120.00177 * 163.61242 * 14 12 11 17 17 H 1.48496 * 109.47568 * 89.99895 * 16 14 12 18 18 H 1.48505 * 109.47094 * 210.00103 * 16 14 12 19 19 H 1.48506 * 109.46979 * 329.99699 * 16 14 12 20 20 C 1.39634 * 118.86738 * 359.53440 * 5 4 3 21 21 C 1.50700 * 119.72309 * 180.25164 * 20 5 4 22 22 N 1.31671 * 120.55544 * 0.22518 * 20 5 4 23 23 H 1.09005 * 109.47174 * 270.01867 * 1 2 3 24 24 H 1.08994 * 109.47486 * 30.02107 * 1 2 3 25 25 H 1.08997 * 109.47187 * 150.02330 * 1 2 3 26 26 H 1.07999 * 120.34003 * 0.02562 * 3 2 1 27 27 H 1.07994 * 120.86129 * 180.27522 * 4 3 2 28 28 H 1.08004 * 119.24805 * 180.02562 * 8 7 6 29 29 H 1.08002 * 120.10114 * 180.29283 * 9 8 7 30 30 H 1.07998 * 120.79459 * 180.02562 * 10 9 8 31 31 H 0.97003 * 119.99726 * 180.02562 * 15 14 12 32 32 H 1.09000 * 109.47540 * 87.54256 * 21 20 5 33 33 H 1.08998 * 109.47306 * 207.54498 * 21 20 5 34 34 H 1.09007 * 109.47144 * 327.54351 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2051 0.0000 4 6 3.5705 1.2020 0.0053 5 6 4.2315 -0.0333 0.0004 6 6 5.7084 -0.0956 0.0013 7 7 6.3397 -0.8417 0.8971 8 6 7.6543 -0.9217 0.9292 9 6 8.4460 -0.2275 0.0238 10 6 7.8585 0.5614 -0.9282 11 6 6.4500 0.6425 -0.9569 12 6 5.7944 1.4394 -1.9161 13 1 4.7884 1.1954 -2.2242 14 6 6.4472 2.5479 -2.4701 15 7 7.5119 3.0372 -1.8895 16 14 5.7969 3.3273 -4.0383 17 1 4.8173 4.3890 -3.6941 18 1 6.9245 3.9222 -4.7998 19 1 5.1320 2.2903 -4.8676 20 6 3.4713 -1.2046 0.0003 21 6 4.1624 -2.5438 0.0008 22 7 2.1558 -1.1488 0.0003 23 1 -0.3634 0.0003 1.0277 24 1 -0.3634 0.8897 -0.5141 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6439 2.1384 0.0004 27 1 4.1266 2.1277 0.0099 28 1 8.1271 -1.5422 1.6762 29 1 9.5217 -0.3133 0.0678 30 1 8.4586 1.1080 -1.6406 31 1 7.9637 3.8052 -2.2729 32 1 4.3678 -2.8464 1.0276 33 1 3.5195 -3.2846 -0.4745 34 1 5.0998 -2.4691 -0.5504 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239439857.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:05 Heat of formation + Delta-G solvation = 43.461532 kcal Electronic energy + Delta-G solvation = -18116.791206 eV Core-core repulsion = 15399.392787 eV Total energy + Delta-G solvation = -2717.398419 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = -1.18 seconds Orbital eigenvalues (eV) -39.73971 -38.17205 -34.27603 -33.37243 -32.30342 -30.69937 -29.83687 -28.34684 -26.39192 -25.32871 -22.11624 -21.89213 -21.23054 -20.20222 -17.48565 -16.07514 -15.87971 -15.49201 -14.74240 -14.50392 -14.05034 -13.99304 -13.36521 -12.80655 -12.68524 -12.60770 -12.26633 -11.99820 -11.80115 -11.62392 -11.53485 -11.35193 -11.32991 -11.18912 -11.02703 -10.67239 -9.97661 -9.51471 -9.04224 -8.88503 -8.45208 -8.12375 -8.05301 -7.44645 -6.99850 -4.61827 1.65470 2.01480 2.55398 2.87002 2.93308 2.98192 3.09925 3.73627 4.39892 4.47652 4.79727 5.30591 5.38581 5.52209 5.56068 5.72784 5.84200 5.95613 5.98508 6.15045 6.20559 6.28022 6.33533 6.36828 6.51496 6.60910 6.70452 6.80316 6.87652 6.93406 7.10463 7.16170 7.41779 7.62351 7.73904 7.81217 8.27480 8.49983 8.57102 8.69882 9.49447 9.88129 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.009526 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.223194 B = 2938.466829 C = 4311.135151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.100 3.900 3 C -0.185 4.185 4 C -0.049 4.049 5 C -0.025 4.025 6 C 0.014 3.986 7 N -0.446 5.446 8 C -0.034 4.034 9 C -0.147 4.147 10 C -0.131 4.131 11 C 0.087 3.913 12 C -0.439 4.439 13 H 0.085 0.915 14 C 0.076 3.924 15 N -0.782 5.782 16 Si 0.908 3.092 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.258 1.258 20 C 0.132 3.868 21 C -0.083 4.083 22 N -0.493 5.493 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.124 0.876 27 H 0.137 0.863 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.286 0.714 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 -0.921 -0.143 5.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.038 4.038 3 C -0.205 4.205 4 C -0.076 4.076 5 C -0.028 4.028 6 C -0.125 4.125 7 N -0.154 5.154 8 C -0.195 4.195 9 C -0.167 4.167 10 C -0.156 4.156 11 C 0.083 3.917 12 C -0.468 4.468 13 H 0.103 0.897 14 C -0.144 4.144 15 N -0.406 5.406 16 Si 0.732 3.268 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.181 1.181 20 C -0.006 4.006 21 C -0.141 4.141 22 N -0.203 5.203 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.142 0.858 27 H 0.155 0.845 28 H 0.139 0.861 29 H 0.117 0.883 30 H 0.143 0.857 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.042 -1.958 0.440 6.367 hybrid contribution 1.033 1.929 -1.290 2.540 sum -5.009 -0.029 -0.849 5.081 Atomic orbital electron populations 1.20579 0.89839 1.02576 1.02172 1.21042 0.96232 0.88590 0.97909 1.21717 0.94838 0.98510 1.05454 1.21755 0.93385 0.98559 0.93874 1.19200 0.92654 0.92667 0.98250 1.19218 0.90522 1.05374 0.97377 1.67057 1.10671 1.16017 1.21641 1.21662 0.89156 1.05937 1.02753 1.21435 0.98920 0.98729 0.97627 1.21359 0.94946 0.99647 0.99692 1.18309 0.92183 0.90458 0.90792 1.19558 1.01473 1.07729 1.18053 0.89675 1.26011 0.94028 0.96561 0.97817 1.69762 1.15970 1.19051 1.35829 0.86281 0.79569 0.79803 0.81178 1.19053 1.19803 1.18131 1.21348 0.88400 0.95536 0.95297 1.20498 0.99182 0.91677 1.02714 1.67162 1.09656 1.29139 1.14363 0.91296 0.91402 0.91180 0.85788 0.84476 0.86084 0.88295 0.85742 0.90291 0.90691 0.92258 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 10.16 36.00 0.37 -0.87 16 2 C 0.10 1.79 6.78 -82.49 -0.56 1.23 16 3 C -0.19 -3.30 9.72 -39.49 -0.38 -3.69 16 4 C -0.05 -1.03 8.19 -38.85 -0.32 -1.35 16 5 C -0.02 -0.56 5.01 -104.76 -0.53 -1.09 16 6 C 0.01 0.33 5.38 -82.24 -0.44 -0.11 16 7 N -0.45 -10.60 8.99 -9.17 -0.08 -10.68 16 8 C -0.03 -0.75 11.16 -17.36 -0.19 -0.95 16 9 C -0.15 -3.25 10.03 -39.84 -0.40 -3.65 16 10 C -0.13 -3.19 8.73 -38.98 -0.34 -3.53 16 11 C 0.09 2.20 5.56 -106.42 -0.59 1.61 16 12 C -0.44 -10.79 7.27 -37.89 -0.28 -11.06 16 13 H 0.09 2.09 6.70 -52.48 -0.35 1.73 16 14 C 0.08 1.76 5.18 -17.31 -0.09 1.67 16 15 N -0.78 -18.60 11.04 55.55 0.61 -17.98 16 16 Si 0.91 17.50 29.59 -169.99 -5.03 12.47 16 17 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 18 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 19 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 20 C 0.13 2.81 6.82 -82.14 -0.56 2.25 16 21 C -0.08 -1.59 9.07 36.01 0.33 -1.27 16 22 N -0.49 -9.87 10.17 -5.39 -0.05 -9.93 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.07 0.74 8.07 -51.93 -0.42 0.33 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 27 H 0.14 2.91 7.49 -52.49 -0.39 2.51 16 28 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 29 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.12 3.07 6.35 -52.49 -0.33 2.74 16 31 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.48 6.90 -51.93 -0.36 1.12 16 LS Contribution 290.74 15.07 4.38 4.38 Total: -1.00 -26.99 290.74 -8.11 -35.10 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.95 Total: 7.43 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -3.99 Total: -20.79 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.48 Total: -38.59 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.99 -8.11 -35.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239439857.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.558 kcal (2) G-P(sol) polarization free energy of solvation -26.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.18 seconds