Wall clock time and date at job start Sun Mar 29 2020 23:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38395 * 119.44875 * 2 1 4 4 C 1.38320 * 119.31670 * 179.74753 * 3 2 1 5 5 C 1.40095 * 118.28002 * 0.47079 * 4 3 2 6 6 C 1.47825 * 120.56339 * 179.80011 * 5 4 3 7 7 N 1.32574 * 119.98879 * 128.50449 * 6 5 4 8 8 C 1.31744 * 121.72220 * 180.02562 * 7 6 5 9 9 C 1.38869 * 121.50627 * 359.95641 * 8 7 6 10 10 C 1.36889 * 119.79486 * 0.02562 * 9 8 7 11 11 C 1.41111 * 118.39543 * 359.97438 * 10 9 8 12 12 C 1.40889 * 120.71759 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99790 * 153.64565 * 12 11 10 14 14 C 1.40072 * 120.00226 * 333.64941 * 12 11 10 15 15 N 1.30773 * 119.99651 * 343.60767 * 14 12 11 16 16 Si 1.86800 * 120.00177 * 163.61242 * 14 12 11 17 17 H 1.48496 * 109.47568 * 89.99895 * 16 14 12 18 18 H 1.48505 * 109.47094 * 210.00103 * 16 14 12 19 19 H 1.48506 * 109.46979 * 329.99699 * 16 14 12 20 20 C 1.39634 * 118.86738 * 359.53440 * 5 4 3 21 21 C 1.50700 * 119.72309 * 180.25164 * 20 5 4 22 22 N 1.31671 * 120.55544 * 0.22518 * 20 5 4 23 23 H 1.09005 * 109.47174 * 270.01867 * 1 2 3 24 24 H 1.08994 * 109.47486 * 30.02107 * 1 2 3 25 25 H 1.08997 * 109.47187 * 150.02330 * 1 2 3 26 26 H 1.07999 * 120.34003 * 0.02562 * 3 2 1 27 27 H 1.07994 * 120.86129 * 180.27522 * 4 3 2 28 28 H 1.08004 * 119.24805 * 180.02562 * 8 7 6 29 29 H 1.08002 * 120.10114 * 180.29283 * 9 8 7 30 30 H 1.07998 * 120.79459 * 180.02562 * 10 9 8 31 31 H 0.97003 * 119.99726 * 180.02562 * 15 14 12 32 32 H 1.09000 * 109.47540 * 87.54256 * 21 20 5 33 33 H 1.08998 * 109.47306 * 207.54498 * 21 20 5 34 34 H 1.09007 * 109.47144 * 327.54351 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2051 0.0000 4 6 3.5705 1.2020 0.0053 5 6 4.2315 -0.0333 0.0004 6 6 5.7084 -0.0956 0.0013 7 7 6.3397 -0.8417 0.8971 8 6 7.6543 -0.9217 0.9292 9 6 8.4460 -0.2275 0.0238 10 6 7.8585 0.5614 -0.9282 11 6 6.4500 0.6425 -0.9569 12 6 5.7944 1.4394 -1.9161 13 1 4.7884 1.1954 -2.2242 14 6 6.4472 2.5479 -2.4701 15 7 7.5119 3.0372 -1.8895 16 14 5.7969 3.3273 -4.0383 17 1 4.8173 4.3890 -3.6941 18 1 6.9245 3.9222 -4.7998 19 1 5.1320 2.2903 -4.8676 20 6 3.4713 -1.2046 0.0003 21 6 4.1624 -2.5438 0.0008 22 7 2.1558 -1.1488 0.0003 23 1 -0.3634 0.0003 1.0277 24 1 -0.3634 0.8897 -0.5141 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6439 2.1384 0.0004 27 1 4.1266 2.1277 0.0099 28 1 8.1271 -1.5422 1.6762 29 1 9.5217 -0.3133 0.0678 30 1 8.4586 1.1080 -1.6406 31 1 7.9637 3.8052 -2.2729 32 1 4.3678 -2.8464 1.0276 33 1 3.5195 -3.2846 -0.4745 34 1 5.0998 -2.4691 -0.5504 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239439857.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:02 Heat of formation + Delta-G solvation = 29.538705 kcal Electronic energy + Delta-G solvation = -18117.394945 eV Core-core repulsion = 15399.392787 eV Total energy + Delta-G solvation = -2718.002158 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30588 -39.88985 -36.05012 -34.86265 -33.86580 -32.49070 -31.44253 -29.76339 -28.03993 -26.96642 -23.69527 -23.60253 -22.87028 -21.81188 -19.29045 -17.76152 -17.47902 -17.12053 -16.28080 -16.15636 -15.67768 -15.45135 -14.93265 -14.33507 -14.23368 -14.00412 -13.89324 -13.62435 -13.31452 -13.26384 -12.98534 -12.85697 -12.80345 -12.69997 -12.59198 -12.21814 -11.71237 -11.24224 -10.64358 -10.44776 -10.16858 -9.89525 -9.75823 -9.13319 -8.73307 -6.45285 0.08934 0.44882 0.84399 1.11330 1.35136 1.44868 1.50595 2.13299 2.67602 2.90474 3.40878 3.63588 3.84674 3.97909 4.05296 4.29919 4.48832 4.56386 4.64601 4.71237 4.77968 4.82219 4.85513 4.88798 4.91900 5.00182 5.12187 5.19808 5.22692 5.29148 5.44102 5.57040 5.79342 5.88789 5.99094 6.01125 6.45514 6.69107 6.76644 7.17204 7.69139 8.17083 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.009526 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.223194 B = 2938.466829 C = 4311.135151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.101 3.899 3 C -0.179 4.179 4 C -0.061 4.061 5 C -0.058 4.058 6 C 0.005 3.995 7 N -0.460 5.460 8 C -0.039 4.039 9 C -0.145 4.145 10 C -0.153 4.153 11 C 0.059 3.941 12 C -0.459 4.459 13 H 0.076 0.924 14 C 0.042 3.958 15 N -0.810 5.810 16 Si 0.974 3.026 17 H -0.257 1.257 18 H -0.263 1.263 19 H -0.263 1.263 20 C 0.118 3.882 21 C -0.074 4.074 22 N -0.503 5.503 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.162 0.838 27 H 0.123 0.877 28 H 0.153 0.847 29 H 0.130 0.870 30 H 0.115 0.885 31 H 0.294 0.706 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.912 -0.548 -0.339 6.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 C -0.198 4.198 4 C -0.088 4.088 5 C -0.061 4.061 6 C -0.133 4.133 7 N -0.167 5.167 8 C -0.200 4.200 9 C -0.165 4.165 10 C -0.179 4.179 11 C 0.054 3.946 12 C -0.488 4.488 13 H 0.094 0.906 14 C -0.175 4.175 15 N -0.434 5.434 16 Si 0.795 3.205 17 H -0.181 1.181 18 H -0.187 1.187 19 H -0.187 1.187 20 C -0.019 4.019 21 C -0.131 4.131 22 N -0.214 5.214 23 H 0.106 0.894 24 H 0.114 0.886 25 H 0.093 0.907 26 H 0.179 0.821 27 H 0.141 0.859 28 H 0.170 0.830 29 H 0.148 0.852 30 H 0.133 0.867 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.673 -1.594 0.261 7.841 hybrid contribution 1.494 1.784 -1.137 2.590 sum -6.179 0.190 -0.877 6.243 Atomic orbital electron populations 1.20716 0.86000 1.04205 1.03860 1.21909 0.98653 0.87838 0.95306 1.22091 0.93583 1.00364 1.03810 1.21773 0.94890 0.97466 0.94638 1.19309 0.92069 0.93979 1.00769 1.19535 0.91700 1.05042 0.97061 1.67129 1.11475 1.16351 1.21786 1.22247 0.88923 1.05718 1.03097 1.21734 1.00605 0.97583 0.96609 1.21410 0.94901 1.00899 1.00739 1.18655 0.92911 0.91414 0.91603 1.19590 1.01418 1.08740 1.19036 0.90584 1.26732 0.94089 0.96464 1.00254 1.69790 1.16888 1.19671 1.37068 0.85299 0.79266 0.78774 0.77197 1.18121 1.18677 1.18672 1.21552 0.89119 0.95707 0.95554 1.20406 0.98493 0.91542 1.02685 1.67276 1.08897 1.30339 1.14925 0.89376 0.88636 0.90748 0.82077 0.85932 0.82961 0.85208 0.86719 0.89459 0.90466 0.90420 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.02 10.16 71.23 0.72 -1.30 16 2 C 0.10 3.38 6.78 42.58 0.29 3.66 16 3 C -0.18 -6.06 9.72 22.33 0.22 -5.84 16 4 C -0.06 -2.57 8.19 22.74 0.19 -2.38 16 5 C -0.06 -2.70 5.01 -19.95 -0.10 -2.80 16 6 C 0.01 0.25 5.38 42.47 0.23 0.48 16 7 N -0.46 -22.15 8.99 -182.92 -1.64 -23.79 16 8 C -0.04 -1.72 11.16 84.86 0.95 -0.78 16 9 C -0.15 -6.43 10.03 22.10 0.22 -6.21 16 10 C -0.15 -7.70 8.73 22.66 0.20 -7.50 16 11 C 0.06 3.07 5.56 -21.03 -0.12 2.95 16 12 C -0.46 -23.30 7.27 23.36 0.17 -23.13 16 13 H 0.08 3.87 6.70 -2.91 -0.02 3.85 16 14 C 0.04 1.98 5.18 85.30 0.44 2.42 16 15 N -0.81 -39.19 11.04 21.85 0.24 -38.95 16 16 Si 0.97 35.86 29.59 68.60 2.03 37.89 16 17 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 18 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 19 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 20 C 0.12 5.04 6.82 42.92 0.29 5.33 16 21 C -0.07 -2.85 9.07 71.24 0.65 -2.20 16 22 N -0.50 -19.57 10.17 -170.95 -1.74 -21.31 16 23 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.09 1.63 8.07 -2.39 -0.02 1.61 16 25 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 27 H 0.12 5.39 7.49 -2.91 -0.02 5.37 16 28 H 0.15 5.60 8.06 -2.91 -0.02 5.57 16 29 H 0.13 4.80 8.06 -2.91 -0.02 4.77 16 30 H 0.11 5.87 6.35 -2.91 -0.02 5.85 16 31 H 0.29 12.78 8.29 -92.71 -0.77 12.02 16 32 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.05 2.24 6.90 -2.38 -0.02 2.23 16 Total: -1.00 -59.48 290.74 4.34 -55.14 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 1.11 Total: 28.30 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: 4.34 Total: -37.28 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -3.14 Total: -84.05 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -59.48 4.34 -55.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239439857.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.679 kcal (2) G-P(sol) polarization free energy of solvation -59.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds