Wall clock time and date at job start Sun Mar 29 2020 23:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38320 * 119.48483 * 2 1 4 4 C 1.38411 * 119.28220 * 179.97438 * 3 2 1 5 5 C 1.39774 * 118.31254 * 0.02571 * 4 3 2 6 6 C 1.48368 * 120.54050 * 180.02562 * 5 4 3 7 7 C 1.38899 * 119.60836 * 46.27623 * 6 5 4 8 8 C 1.40858 * 118.75842 * 179.75798 * 7 6 5 9 9 C 1.41522 * 120.98511 * 180.27989 * 8 7 6 10 10 H 1.08001 * 119.99785 * 201.34352 * 9 8 7 11 11 C 1.40045 * 120.00200 * 21.34532 * 9 8 7 12 12 N 1.30738 * 120.00115 * 17.96201 * 11 9 8 13 13 Si 1.86800 * 120.00052 * 197.97395 * 11 9 8 14 14 H 1.48496 * 109.47170 * 94.95710 * 13 11 9 15 15 H 1.48508 * 109.47060 * 214.95538 * 13 11 9 16 16 H 1.48497 * 109.47224 * 334.95364 * 13 11 9 17 17 C 1.41135 * 118.02560 * 0.51005 * 8 7 6 18 18 C 1.37752 * 119.07315 * 359.75241 * 17 8 7 19 19 N 1.31914 * 121.15498 * 359.97438 * 18 17 8 20 20 C 1.39313 * 118.92590 * 359.97438 * 5 4 3 21 21 C 1.50700 * 119.70385 * 179.97438 * 20 5 4 22 22 N 1.31743 * 120.59618 * 359.97438 * 20 5 4 23 23 H 1.08994 * 109.47079 * 269.99754 * 1 2 3 24 24 H 1.09007 * 109.47016 * 29.99658 * 1 2 3 25 25 H 1.09001 * 109.46840 * 149.99682 * 1 2 3 26 26 H 1.08003 * 120.35491 * 0.02562 * 3 2 1 27 27 H 1.07998 * 120.84229 * 180.02562 * 4 3 2 28 28 H 1.07998 * 120.62420 * 0.02865 * 7 6 5 29 29 H 0.97003 * 120.00086 * 179.97438 * 12 11 9 30 30 H 1.08002 * 120.46635 * 179.77252 * 17 8 7 31 31 H 1.07996 * 119.41784 * 180.02562 * 18 17 8 32 32 H 1.09000 * 109.47585 * 275.13889 * 21 20 5 33 33 H 1.09001 * 109.46915 * 35.14152 * 21 20 5 34 34 H 1.09005 * 109.47000 * 155.14169 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.2041 0.0000 4 6 3.5719 1.1992 0.0005 5 6 4.2305 -0.0337 0.0005 6 6 5.7129 -0.0966 0.0017 7 6 6.4332 0.7078 0.8753 8 6 7.8396 0.6299 0.8649 9 6 8.6198 1.4237 1.7390 10 1 9.6556 1.6234 1.5074 11 6 8.0487 1.9502 2.9043 12 7 6.9375 1.4457 3.3733 13 14 8.8745 3.3735 3.7884 14 1 8.2709 4.6533 3.3378 15 1 8.6826 3.2245 5.2535 16 1 10.3264 3.3743 3.4769 17 6 8.4477 -0.2596 -0.0466 18 6 7.6504 -1.0138 -0.8791 19 7 6.3355 -0.9173 -0.8363 20 6 3.4725 -1.2026 0.0005 21 6 4.1644 -2.5413 -0.0001 22 7 2.1562 -1.1481 0.0010 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8901 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6452 2.1379 0.0004 27 1 4.1289 2.1244 0.0010 28 1 5.9244 1.3773 1.5530 29 1 6.5422 1.8101 4.1807 30 1 9.5232 -0.3481 -0.0906 31 1 8.1098 -1.6965 -1.5784 32 1 4.4127 -2.8216 -1.0238 33 1 5.0780 -2.4784 0.5911 34 1 3.5030 -3.2923 0.4320 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239449512.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:10 Heat of formation + Delta-G solvation = 28.143743 kcal Electronic energy + Delta-G solvation = -17766.229694 eV Core-core repulsion = 15048.167046 eV Total energy + Delta-G solvation = -2718.062648 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.41225 -39.91107 -36.14322 -34.86655 -33.99722 -32.54185 -31.14863 -29.79412 -27.96895 -27.32515 -24.08487 -23.41090 -22.97005 -21.88861 -19.44749 -17.67172 -17.32523 -16.87982 -16.18567 -16.14623 -16.09354 -15.54754 -15.03724 -14.46309 -14.33779 -14.05688 -13.97190 -13.92081 -13.22139 -13.10686 -12.98121 -12.90197 -12.78747 -12.76011 -12.58881 -11.97125 -11.80871 -11.29807 -10.82613 -10.51890 -10.08913 -9.94965 -9.80279 -9.06126 -8.74306 -6.60058 -0.05998 0.30262 0.95796 0.96223 1.36633 1.50968 1.54024 2.14873 2.65167 2.83397 3.28683 3.58068 3.67434 3.86210 3.90455 4.17392 4.35242 4.52072 4.62807 4.71927 4.77052 4.77983 4.85815 4.86891 4.93685 4.96356 5.10505 5.17911 5.22179 5.27169 5.37192 5.43906 5.52846 5.82274 5.89376 6.15429 6.47051 6.75437 6.76706 7.05304 7.65916 8.18441 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.006548 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.731310 B = 4275.003137 C = 5177.617288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.111 3.889 3 C -0.173 4.173 4 C -0.069 4.069 5 C -0.097 4.097 6 C 0.143 3.857 7 C -0.215 4.215 8 C 0.095 3.905 9 C -0.483 4.483 10 H 0.085 0.915 11 C 0.038 3.962 12 N -0.811 5.811 13 Si 0.987 3.013 14 H -0.260 1.260 15 H -0.267 1.267 16 H -0.255 1.255 17 C -0.289 4.289 18 C 0.102 3.898 19 N -0.566 5.566 20 C 0.137 3.863 21 C -0.076 4.076 22 N -0.505 5.505 23 H 0.088 0.912 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.171 0.829 27 H 0.133 0.867 28 H 0.116 0.884 29 H 0.292 0.708 30 H 0.115 0.885 31 H 0.159 0.841 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.149 1.734 -2.189 8.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.027 4.027 3 C -0.192 4.192 4 C -0.096 4.096 5 C -0.100 4.100 6 C 0.012 3.988 7 C -0.238 4.238 8 C 0.087 3.913 9 C -0.514 4.514 10 H 0.103 0.897 11 C -0.179 4.179 12 N -0.436 5.436 13 Si 0.807 3.193 14 H -0.185 1.185 15 H -0.191 1.191 16 H -0.178 1.178 17 C -0.312 4.312 18 C -0.053 4.053 19 N -0.281 5.281 20 C 0.000 4.000 21 C -0.134 4.134 22 N -0.216 5.216 23 H 0.107 0.893 24 H 0.119 0.881 25 H 0.094 0.906 26 H 0.188 0.812 27 H 0.151 0.849 28 H 0.134 0.866 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.176 0.824 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.299 0.425 -2.573 9.657 hybrid contribution 1.818 1.754 1.094 2.753 sum -7.481 2.179 -1.478 7.931 Atomic orbital electron populations 1.20775 0.85714 1.04559 1.04039 1.22026 0.98891 0.87863 0.93910 1.22152 0.93341 1.00645 1.03063 1.21816 0.95495 0.97020 0.95244 1.19617 0.92254 0.94892 1.03215 1.19366 0.91615 0.94268 0.93553 1.22181 0.94816 1.03994 1.02795 1.18193 0.92504 0.89650 0.90915 1.19938 0.98864 1.27789 1.04775 0.89664 1.26893 0.94989 0.98702 0.97329 1.69831 1.18335 1.36031 1.19444 0.85109 0.79699 0.77234 0.77257 1.18485 1.19123 1.17822 1.22119 0.99924 1.03875 1.05292 1.22394 0.89133 0.96957 0.96786 1.67530 1.11209 1.24168 1.25201 1.21447 0.89085 0.95663 0.93814 1.20459 0.98358 0.91466 1.03072 1.67365 1.08681 1.30590 1.14924 0.89324 0.88117 0.90591 0.81174 0.84917 0.86580 0.89676 0.86710 0.82423 0.89886 0.92991 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 10.16 71.24 0.72 -1.12 16 2 C 0.11 3.38 6.78 42.57 0.29 3.67 16 3 C -0.17 -5.13 9.72 22.33 0.22 -4.91 16 4 C -0.07 -2.60 9.55 22.68 0.22 -2.39 16 5 C -0.10 -4.24 5.63 -19.95 -0.11 -4.35 16 6 C 0.14 7.05 5.52 41.86 0.23 7.28 16 7 C -0.22 -11.38 8.20 23.07 0.19 -11.19 16 8 C 0.10 5.08 5.63 -21.12 -0.12 4.97 16 9 C -0.48 -25.14 9.12 23.52 0.21 -24.93 16 10 H 0.09 4.23 7.91 -2.91 -0.02 4.20 16 11 C 0.04 1.86 5.20 85.29 0.44 2.30 16 12 N -0.81 -41.11 10.83 21.84 0.24 -40.87 16 13 Si 0.99 36.24 29.60 68.60 2.03 38.27 16 14 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 15 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 16 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 17 C -0.29 -13.96 9.90 22.87 0.23 -13.73 16 18 C 0.10 4.58 11.15 84.57 0.94 5.53 16 19 N -0.57 -26.89 8.63 -185.36 -1.60 -28.49 16 20 C 0.14 5.62 6.81 42.83 0.29 5.91 16 21 C -0.08 -2.90 8.85 71.24 0.63 -2.27 16 22 N -0.50 -18.56 10.17 -171.23 -1.74 -20.30 16 23 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.10 1.40 8.07 -2.38 -0.02 1.38 16 25 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.17 3.55 8.06 -2.91 -0.02 3.52 16 27 H 0.13 4.82 8.01 -2.91 -0.02 4.80 16 28 H 0.12 6.35 5.97 -2.91 -0.02 6.33 16 29 H 0.29 13.33 8.29 -92.71 -0.77 12.56 16 30 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 31 H 0.16 5.78 8.06 -2.91 -0.02 5.76 16 32 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.05 2.20 6.93 -2.39 -0.02 2.18 16 34 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 Total: -1.00 -62.25 294.69 4.41 -57.83 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 1.10 Total: 28.80 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 4.38 Total: -35.23 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -3.10 Total: -89.67 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Total: -62.25 4.41 -57.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239449512.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.979 kcal (2) G-P(sol) polarization free energy of solvation -62.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds