Wall clock time and date at job start Sun Mar 29 2020 23:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38432 * 119.92640 * 2 1 4 4 C 1.38387 * 120.29806 * 179.97438 * 3 2 1 5 5 C 1.37936 * 120.15154 * 0.02562 * 4 3 2 6 6 C 1.39642 * 119.84900 * 359.97438 * 5 4 3 7 7 C 1.47932 * 120.14769 * 179.97438 * 6 5 4 8 8 C 1.40432 * 120.78974 * 310.00295 * 7 6 5 9 9 N 1.31594 * 119.08883 * 180.02562 * 8 7 6 10 10 C 1.33638 * 120.83420 * 359.97438 * 9 8 7 11 11 C 1.41092 * 119.13324 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00274 * 7.33937 * 11 10 9 13 13 C 1.40143 * 119.99878 * 187.33390 * 11 10 9 14 14 N 1.30661 * 119.99987 * 7.34328 * 13 11 10 15 15 Si 1.86804 * 120.00182 * 187.05802 * 13 11 10 16 16 H 1.48499 * 109.47447 * 265.29672 * 15 13 11 17 17 H 1.48503 * 109.46487 * 25.29625 * 15 13 11 18 18 H 1.48497 * 109.47159 * 145.29305 * 15 13 11 19 19 N 1.33650 * 121.73419 * 0.25526 * 10 9 8 20 20 C 1.31587 * 120.82617 * 359.48091 * 19 10 9 21 21 C 1.37899 * 119.92460 * 180.22864 * 2 1 3 22 22 C 1.50699 * 120.08137 * 0.04941 * 21 2 1 23 23 H 1.09000 * 109.47111 * 90.00552 * 1 2 3 24 24 H 1.09007 * 109.47299 * 209.99950 * 1 2 3 25 25 H 1.09002 * 109.47334 * 330.00158 * 1 2 3 26 26 H 1.07997 * 119.84664 * 359.95369 * 3 2 1 27 27 H 1.07999 * 119.91990 * 179.97438 * 4 3 2 28 28 H 1.07998 * 120.07754 * 179.97438 * 5 4 3 29 29 H 1.07998 * 120.45598 * 0.02562 * 8 7 6 30 30 H 0.97008 * 119.99941 * 179.72467 * 14 13 11 31 31 H 1.08006 * 120.45215 * 180.27926 * 20 19 10 32 32 H 1.09003 * 109.46946 * 270.21407 * 22 21 2 33 33 H 1.09000 * 109.46942 * 30.20608 * 22 21 2 34 34 H 1.08995 * 109.47898 * 150.20832 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1976 1.1997 0.0000 4 6 3.5814 1.2087 0.0005 5 6 4.2819 0.0205 0.0005 6 6 3.5916 -1.1933 0.0005 7 6 4.3363 -2.4716 0.0000 8 6 5.3679 -2.7021 -0.9246 9 7 6.0080 -3.8515 -0.8955 10 6 5.6875 -4.7916 -0.0014 11 6 6.3970 -6.0111 -0.0027 12 1 7.2624 -6.1318 -0.6374 13 6 5.9787 -7.0660 0.8198 14 7 4.8539 -6.9745 1.4783 15 14 7.0254 -8.6061 0.9685 16 1 6.5430 -9.6274 0.0045 17 1 8.4413 -8.2729 0.6695 18 1 6.9240 -9.1420 2.3496 19 7 4.7088 -4.6091 0.8904 20 6 4.0288 -3.4831 0.9243 21 6 2.1949 -1.1951 -0.0048 22 6 1.4415 -2.5003 -0.0111 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6539 2.1329 -0.0008 27 1 4.1140 2.1482 0.0001 28 1 5.3619 0.0289 0.0005 29 1 5.6322 -1.9465 -1.6495 30 1 4.5624 -7.7063 2.0445 31 1 3.2421 -3.3404 1.6504 32 1 1.2558 -2.8176 1.0151 33 1 0.4911 -2.3687 -0.5283 34 1 2.0325 -3.2586 -0.5246 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239716683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:19 Heat of formation + Delta-G solvation = 51.615603 kcal Electronic energy + Delta-G solvation = -17658.238932 eV Core-core repulsion = 14941.194100 eV Total energy + Delta-G solvation = -2717.044831 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 3.63 seconds Orbital eigenvalues (eV) -39.52785 -38.37863 -34.07696 -33.04454 -32.63951 -31.73513 -29.50045 -27.46221 -26.14858 -25.73147 -22.84343 -22.29366 -20.33338 -20.14565 -17.92852 -16.15122 -15.86976 -15.28224 -14.90009 -14.67617 -14.45451 -13.82476 -12.99937 -12.95170 -12.80047 -12.58004 -12.50659 -12.22865 -12.07778 -11.67690 -11.42714 -11.34577 -11.30562 -10.88299 -10.79508 -10.48628 -10.37446 -9.55362 -9.18927 -9.14718 -8.63743 -8.15059 -7.60958 -7.27934 -6.70649 -4.78917 1.66338 1.80075 2.59199 2.93725 2.99781 3.03012 3.07457 3.79911 4.18100 4.55181 5.13497 5.20290 5.35769 5.51268 5.56250 5.71663 5.72571 5.74071 5.82141 5.86992 5.97126 6.01205 6.09627 6.16106 6.25453 6.33820 6.57321 6.63761 6.78497 6.89138 6.94409 6.96598 7.13472 7.37492 7.46102 7.61717 8.06520 8.39639 8.46562 9.02178 9.99471 10.17937 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.041196 B = 0.005032 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.513799 B = 5562.861570 C = 6043.151105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.120 4.120 5 C -0.131 4.131 6 C 0.027 3.973 7 C -0.328 4.328 8 C 0.186 3.814 9 N -0.595 5.595 10 C 0.386 3.614 11 C -0.388 4.388 12 H 0.095 0.905 13 C 0.066 3.934 14 N -0.705 5.705 15 Si 0.920 3.080 16 H -0.267 1.267 17 H -0.257 1.257 18 H -0.273 1.273 19 N -0.511 5.511 20 C 0.183 3.817 21 C -0.092 4.092 22 C -0.111 4.111 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.279 0.721 31 H 0.128 0.872 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.904 8.191 -0.413 10.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 C -0.164 4.164 4 C -0.138 4.138 5 C -0.149 4.149 6 C 0.026 3.974 7 C -0.338 4.338 8 C 0.012 3.988 9 N -0.313 5.313 10 C 0.152 3.848 11 C -0.422 4.422 12 H 0.113 0.887 13 C -0.162 4.162 14 N -0.325 5.325 15 Si 0.743 3.257 16 H -0.192 1.192 17 H -0.181 1.181 18 H -0.198 1.198 19 N -0.227 5.227 20 C 0.007 3.993 21 C -0.093 4.093 22 C -0.167 4.167 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.146 0.854 30 H 0.090 0.910 31 H 0.146 0.854 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.469 7.017 -0.259 8.900 hybrid contribution -0.114 0.401 0.126 0.436 sum -5.583 7.418 -0.132 9.285 Atomic orbital electron populations 1.20774 0.91981 1.02277 1.01786 1.19598 0.95380 0.92719 1.01041 1.20830 0.94161 0.96761 1.04600 1.20917 0.94116 0.97534 1.01246 1.21253 0.99506 0.91757 1.02419 1.18597 0.91481 0.92386 0.94958 1.19694 1.07786 0.97367 1.08924 1.22632 0.89041 0.93562 0.93575 1.68664 1.32206 1.03177 1.27276 1.19926 0.88209 0.91968 0.84674 1.19418 1.10132 0.93788 1.18834 0.88694 1.26164 0.95248 1.00631 0.94181 1.70051 1.16603 1.30012 1.15873 0.86099 0.81007 0.80021 0.78558 1.19195 1.18100 1.19774 1.69277 1.09088 1.19532 1.24828 1.22994 0.94917 0.88119 0.93304 1.19868 0.93125 0.94463 1.01820 1.20819 0.99103 0.94904 1.01883 0.91703 0.91501 0.92145 0.87119 0.86942 0.86611 0.85377 0.90978 0.85447 0.91618 0.92421 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.18 36.00 0.33 -0.96 16 2 C -0.09 -1.30 5.87 -104.68 -0.61 -1.92 16 3 C -0.15 -2.05 9.70 -39.46 -0.38 -2.43 16 4 C -0.12 -1.76 10.03 -39.64 -0.40 -2.15 16 5 C -0.13 -2.22 9.56 -39.17 -0.37 -2.59 16 6 C 0.03 0.52 5.52 -104.87 -0.58 -0.06 16 7 C -0.33 -7.18 4.75 -104.28 -0.50 -7.68 16 8 C 0.19 4.28 10.85 -16.83 -0.18 4.10 16 9 N -0.59 -15.66 10.34 -12.41 -0.13 -15.79 16 10 C 0.39 10.75 7.33 -158.17 -1.16 9.59 16 11 C -0.39 -10.42 9.35 -37.79 -0.35 -10.78 16 12 H 0.10 2.45 7.86 -52.49 -0.41 2.03 16 13 C 0.07 1.62 5.47 -17.33 -0.09 1.53 16 14 N -0.70 -18.03 11.51 55.56 0.64 -17.40 16 15 Si 0.92 17.98 29.57 -169.99 -5.03 12.95 16 16 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 18 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 19 N -0.51 -13.87 7.94 -12.41 -0.10 -13.97 16 20 C 0.18 4.33 9.24 -16.83 -0.16 4.18 16 21 C -0.09 -1.58 5.89 -104.21 -0.61 -2.20 16 22 C -0.11 -1.79 7.66 36.01 0.28 -1.52 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.75 6.71 -51.92 -0.35 0.40 16 25 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 26 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 30 H 0.28 6.37 8.29 -40.82 -0.34 6.04 16 31 H 0.13 2.74 6.98 -52.48 -0.37 2.37 16 32 H 0.07 1.02 7.56 -51.93 -0.39 0.63 16 33 H 0.06 0.79 6.71 -51.93 -0.35 0.45 16 34 H 0.07 1.36 6.48 -51.93 -0.34 1.03 16 LS Contribution 290.10 15.07 4.37 4.37 Total: -1.00 -29.11 290.10 -8.91 -38.02 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -3.87 Total: 4.70 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -4.80 Total: -12.90 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.41 Total: -47.15 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.11 -8.91 -38.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239716683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.636 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.64 seconds