Wall clock time and date at job start Sun Mar 29 2020 23:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38321 * 120.35353 * 2 1 4 4 N 1.31902 * 121.03369 * 179.97438 * 3 2 1 5 5 C 1.31739 * 121.85759 * 359.71990 * 4 3 2 6 6 C 1.50700 * 119.70422 * 180.28887 * 5 4 3 7 7 C 1.39339 * 120.59130 * 0.54805 * 5 4 3 8 8 C 1.48312 * 120.54365 * 179.74534 * 7 5 4 9 9 C 1.39907 * 119.60664 * 134.39146 * 8 7 5 10 10 C 1.38685 * 119.45977 * 179.97438 * 9 8 7 11 11 C 1.38287 * 118.69581 * 359.73616 * 10 9 8 12 12 C 1.40688 * 119.17983 * 0.50985 * 11 10 9 13 13 C 1.41386 * 119.76260 * 179.75195 * 12 11 10 14 14 H 1.07994 * 120.00290 * 332.86803 * 13 12 11 15 15 C 1.40021 * 119.99616 * 152.86439 * 13 12 11 16 16 N 1.30741 * 120.00293 * 339.04485 * 15 13 12 17 17 Si 1.86805 * 119.99637 * 158.77156 * 15 13 12 18 18 H 1.48500 * 109.46864 * 270.27587 * 17 15 13 19 19 H 1.48493 * 109.47120 * 30.27368 * 17 15 13 20 20 H 1.48495 * 109.46853 * 150.27644 * 17 15 13 21 21 N 1.32212 * 119.60952 * 314.37872 * 8 7 5 22 22 C 1.38399 * 120.35542 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.46973 * 270.02164 * 1 2 3 24 24 H 1.09004 * 109.47490 * 30.01706 * 1 2 3 25 25 H 1.09005 * 109.47605 * 150.02341 * 1 2 3 26 26 H 1.07991 * 119.48862 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47437 * 266.80012 * 6 5 4 28 28 H 1.09001 * 109.47454 * 26.80379 * 6 5 4 29 29 H 1.09005 * 109.47101 * 146.79949 * 6 5 4 30 30 H 1.07994 * 120.26703 * 0.03183 * 9 8 7 31 31 H 1.08010 * 120.65320 * 179.97438 * 10 9 8 32 32 H 1.07999 * 120.41280 * 180.25919 * 11 10 9 33 33 H 0.97004 * 119.99694 * 353.04659 * 16 15 13 34 34 H 1.08006 * 120.84734 * 0.04129 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1936 0.0000 4 7 3.5249 1.2093 0.0005 5 6 4.2335 0.0987 0.0065 6 6 5.7386 0.1732 0.0134 7 6 3.6037 -1.1443 0.0011 8 6 4.4025 -2.3939 0.0022 9 6 4.0538 -3.4364 0.8677 10 6 4.8025 -4.6038 0.8658 11 6 5.8747 -4.7035 -0.0018 12 6 6.1785 -3.6186 -0.8445 13 6 7.2752 -3.7053 -1.7326 14 1 8.1123 -4.3454 -1.4961 15 6 7.2759 -2.9613 -2.9188 16 7 6.1492 -2.5219 -3.4155 17 14 8.8875 -2.5902 -3.7874 18 1 9.4452 -1.3141 -3.2719 19 1 9.8518 -3.6903 -3.5330 20 1 8.6465 -2.4710 -5.2479 21 7 5.4354 -2.5097 -0.8149 22 6 2.2064 -1.1943 0.0005 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6634 2.1274 0.0004 27 1 6.1092 0.1314 -1.0108 28 1 6.0540 1.1084 0.4760 29 1 6.1414 -0.6664 0.5800 30 1 3.2080 -3.3332 1.5312 31 1 4.5508 -5.4205 1.5262 32 1 6.4740 -5.6016 -0.0294 33 1 5.3061 -2.7944 -3.0207 34 1 1.6861 -2.1407 0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239893263.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:49 Heat of formation + Delta-G solvation = 40.655542 kcal Electronic energy + Delta-G solvation = -17989.882662 eV Core-core repulsion = 15272.362567 eV Total energy + Delta-G solvation = -2717.520095 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -40.02440 -38.29172 -34.09018 -33.81153 -32.54550 -30.61301 -29.53624 -28.82976 -25.49898 -25.10383 -23.71262 -21.84223 -21.17587 -20.16742 -18.02957 -16.38218 -15.72575 -15.36307 -14.88016 -14.55292 -14.16178 -14.04266 -13.32204 -13.09034 -12.84335 -12.79664 -12.34937 -12.33152 -11.98449 -11.76201 -11.55972 -11.41606 -11.22353 -11.06091 -10.72820 -10.41396 -9.86211 -9.43319 -9.13044 -9.06926 -8.58746 -8.34605 -7.99740 -7.56669 -7.08748 -4.63435 1.34438 1.63010 2.60876 2.73243 3.18319 3.25350 3.35975 4.04413 4.15043 4.59119 4.71145 5.00730 5.05348 5.27489 5.32099 5.41127 5.55626 5.62681 5.80642 5.88714 6.01447 6.09752 6.23315 6.27434 6.37434 6.47201 6.53224 6.57136 6.78545 6.80326 6.93095 7.18399 7.34311 7.46528 7.68389 7.78962 7.96077 8.40805 8.57988 8.72655 9.65236 10.13490 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022053 B = 0.007120 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.350951 B = 3931.436095 C = 4641.468488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.156 4.156 3 C 0.092 3.908 4 N -0.488 5.488 5 C 0.154 3.846 6 C -0.088 4.088 7 C -0.062 4.062 8 C 0.191 3.809 9 C -0.297 4.297 10 C -0.053 4.053 11 C -0.264 4.264 12 C 0.252 3.748 13 C -0.498 4.498 14 H 0.082 0.918 15 C 0.043 3.957 16 N -0.764 5.764 17 Si 1.069 2.931 18 H -0.274 1.274 19 H -0.277 1.277 20 H -0.277 1.277 21 N -0.523 5.523 22 C -0.062 4.062 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.148 0.852 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.302 0.698 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 2.967 4.353 8.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.158 4.158 3 C -0.066 4.066 4 N -0.197 5.197 5 C 0.016 3.984 6 C -0.145 4.145 7 C -0.065 4.065 8 C 0.047 3.953 9 C -0.320 4.320 10 C -0.077 4.077 11 C -0.286 4.286 12 C 0.128 3.872 13 C -0.529 4.529 14 H 0.100 0.900 15 C -0.183 4.183 16 N -0.385 5.385 17 Si 0.893 3.107 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.202 1.202 21 N -0.238 5.238 22 C -0.089 4.089 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.166 0.834 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.756 5.228 2.472 7.487 hybrid contribution -1.535 -2.507 1.997 3.554 sum -6.291 2.721 4.468 8.182 Atomic orbital electron populations 1.20636 0.90601 1.02704 1.02048 1.20711 0.97132 0.94055 1.03906 1.22522 0.89956 0.96994 0.97092 1.67475 1.07782 1.31183 1.13262 1.21420 0.97172 0.87044 0.92762 1.20609 0.88194 1.01620 1.04101 1.19604 0.92926 0.93661 1.00306 1.19289 0.92468 0.90698 0.92873 1.21099 1.05955 0.96849 1.08138 1.20868 0.94643 0.95938 0.96292 1.21877 1.01748 1.00072 1.04952 1.18548 0.91020 0.86405 0.91261 1.20477 1.03320 1.25007 1.04061 0.89954 1.26920 1.04037 0.91873 0.95502 1.70211 1.00729 1.30227 1.37364 0.83581 0.73162 0.77595 0.76359 1.19933 1.20259 1.20212 1.68423 1.07029 1.24807 1.23532 1.21480 0.92890 0.98046 0.96458 0.91406 0.91530 0.91623 0.83430 0.89372 0.92203 0.90662 0.88349 0.88105 0.87898 0.88414 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.03 36.00 0.36 -0.75 16 2 C -0.16 -2.37 5.89 -104.53 -0.62 -2.99 16 3 C 0.09 1.47 10.85 -17.49 -0.19 1.28 16 4 N -0.49 -9.39 10.26 -9.19 -0.09 -9.49 16 5 C 0.15 3.21 6.81 -82.22 -0.56 2.65 16 6 C -0.09 -1.81 8.89 36.01 0.32 -1.49 16 7 C -0.06 -1.31 5.64 -104.75 -0.59 -1.90 16 8 C 0.19 4.45 5.56 -82.93 -0.46 3.99 16 9 C -0.30 -6.44 9.49 -38.79 -0.37 -6.81 16 10 C -0.05 -1.15 10.15 -39.40 -0.40 -1.55 16 11 C -0.26 -6.28 9.83 -38.64 -0.38 -6.66 16 12 C 0.25 6.62 5.95 -85.01 -0.51 6.11 16 13 C -0.50 -13.02 9.05 -37.72 -0.34 -13.36 16 14 H 0.08 2.05 7.93 -52.49 -0.42 1.64 16 15 C 0.04 1.10 5.27 -17.35 -0.09 1.01 16 16 N -0.76 -20.82 13.11 55.55 0.73 -20.09 16 17 Si 1.07 21.66 29.98 -169.99 -5.10 16.56 16 18 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 21 N -0.52 -13.49 6.37 -7.68 -0.05 -13.54 16 22 C -0.06 -1.10 9.21 -38.93 -0.36 -1.46 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 25 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 26 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.64 6.79 -51.93 -0.35 1.29 16 30 H 0.10 1.89 7.94 -52.49 -0.42 1.48 16 31 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 32 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 33 H 0.30 8.61 6.84 -40.82 -0.28 8.33 16 34 H 0.13 2.11 7.99 -52.48 -0.42 1.69 16 LS Contribution 295.96 15.07 4.46 4.46 Total: -1.00 -28.80 295.96 -8.29 -37.09 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.06 Total: 6.94 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -4.18 Total: -21.92 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.58 Total: -43.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.10 Total: 16.56 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.80 -8.29 -37.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239893263.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.741 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds