Wall clock time and date at job start Sun Mar 29 2020 23:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38321 * 120.35353 * 2 1 4 4 N 1.31902 * 121.03369 * 179.97438 * 3 2 1 5 5 C 1.31739 * 121.85759 * 359.71990 * 4 3 2 6 6 C 1.50700 * 119.70422 * 180.28887 * 5 4 3 7 7 C 1.39339 * 120.59130 * 0.54805 * 5 4 3 8 8 C 1.48312 * 120.54365 * 179.74534 * 7 5 4 9 9 C 1.39907 * 119.60664 * 134.39146 * 8 7 5 10 10 C 1.38685 * 119.45977 * 179.97438 * 9 8 7 11 11 C 1.38287 * 118.69581 * 359.73616 * 10 9 8 12 12 C 1.40688 * 119.17983 * 0.50985 * 11 10 9 13 13 C 1.41386 * 119.76260 * 179.75195 * 12 11 10 14 14 H 1.07994 * 120.00290 * 332.86803 * 13 12 11 15 15 C 1.40021 * 119.99616 * 152.86439 * 13 12 11 16 16 N 1.30741 * 120.00293 * 339.04485 * 15 13 12 17 17 Si 1.86805 * 119.99637 * 158.77156 * 15 13 12 18 18 H 1.48500 * 109.46864 * 270.27587 * 17 15 13 19 19 H 1.48493 * 109.47120 * 30.27368 * 17 15 13 20 20 H 1.48495 * 109.46853 * 150.27644 * 17 15 13 21 21 N 1.32212 * 119.60952 * 314.37872 * 8 7 5 22 22 C 1.38399 * 120.35542 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.46973 * 270.02164 * 1 2 3 24 24 H 1.09004 * 109.47490 * 30.01706 * 1 2 3 25 25 H 1.09005 * 109.47605 * 150.02341 * 1 2 3 26 26 H 1.07991 * 119.48862 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47437 * 266.80012 * 6 5 4 28 28 H 1.09001 * 109.47454 * 26.80379 * 6 5 4 29 29 H 1.09005 * 109.47101 * 146.79949 * 6 5 4 30 30 H 1.07994 * 120.26703 * 0.03183 * 9 8 7 31 31 H 1.08010 * 120.65320 * 179.97438 * 10 9 8 32 32 H 1.07999 * 120.41280 * 180.25919 * 11 10 9 33 33 H 0.97004 * 119.99694 * 353.04659 * 16 15 13 34 34 H 1.08006 * 120.84734 * 0.04129 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1936 0.0000 4 7 3.5249 1.2093 0.0005 5 6 4.2335 0.0987 0.0065 6 6 5.7386 0.1732 0.0134 7 6 3.6037 -1.1443 0.0011 8 6 4.4025 -2.3939 0.0022 9 6 4.0538 -3.4364 0.8677 10 6 4.8025 -4.6038 0.8658 11 6 5.8747 -4.7035 -0.0018 12 6 6.1785 -3.6186 -0.8445 13 6 7.2752 -3.7053 -1.7326 14 1 8.1123 -4.3454 -1.4961 15 6 7.2759 -2.9613 -2.9188 16 7 6.1492 -2.5219 -3.4155 17 14 8.8875 -2.5902 -3.7874 18 1 9.4452 -1.3141 -3.2719 19 1 9.8518 -3.6903 -3.5330 20 1 8.6465 -2.4710 -5.2479 21 7 5.4354 -2.5097 -0.8149 22 6 2.2064 -1.1943 0.0005 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6634 2.1274 0.0004 27 1 6.1092 0.1314 -1.0108 28 1 6.0540 1.1084 0.4760 29 1 6.1414 -0.6664 0.5800 30 1 3.2080 -3.3332 1.5312 31 1 4.5508 -5.4205 1.5262 32 1 6.4740 -5.6016 -0.0294 33 1 5.3061 -2.7944 -3.0207 34 1 1.6861 -2.1407 0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239893263.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:45 Heat of formation + Delta-G solvation = 25.090066 kcal Electronic energy + Delta-G solvation = -17990.557632 eV Core-core repulsion = 15272.362567 eV Total energy + Delta-G solvation = -2718.195065 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.48858 -40.04610 -35.89440 -35.15134 -34.14784 -32.42218 -31.16031 -30.30076 -27.31744 -26.40181 -25.25094 -23.56499 -22.86795 -21.67546 -19.88042 -17.83569 -17.18358 -16.93552 -16.63502 -16.31659 -15.69720 -15.59974 -14.89878 -14.55734 -14.20972 -14.15781 -13.96488 -13.70572 -13.51818 -13.32697 -13.00483 -12.95680 -12.78343 -12.68535 -12.37712 -11.96433 -11.63242 -11.05285 -10.85002 -10.55533 -10.31220 -9.92990 -9.81784 -9.27498 -9.02884 -6.61409 -0.13592 0.23967 0.81785 0.96850 1.51759 1.63825 1.78824 2.35715 2.67207 2.80325 3.31259 3.54203 3.59605 3.85891 3.90415 4.04067 4.22730 4.30862 4.51207 4.57647 4.63537 4.66234 4.71875 4.77741 4.85993 4.89910 5.08271 5.10349 5.22078 5.28223 5.34606 5.51278 5.64439 5.73841 5.79524 5.84363 6.07529 6.66828 6.81690 6.99524 7.80393 8.12625 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022053 B = 0.007120 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.350951 B = 3931.436095 C = 4641.468488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.139 4.139 3 C 0.092 3.908 4 N -0.503 5.503 5 C 0.127 3.873 6 C -0.074 4.074 7 C -0.093 4.093 8 C 0.175 3.825 9 C -0.288 4.288 10 C -0.049 4.049 11 C -0.284 4.284 12 C 0.226 3.774 13 C -0.536 4.536 14 H 0.084 0.916 15 C 0.010 3.990 16 N -0.796 5.796 17 Si 1.119 2.881 18 H -0.269 1.269 19 H -0.255 1.255 20 H -0.273 1.273 21 N -0.546 5.546 22 C -0.068 4.068 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.190 0.810 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.129 0.871 31 H 0.142 0.858 32 H 0.112 0.888 33 H 0.281 0.719 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.221 3.572 5.416 10.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.141 4.141 3 C -0.066 4.066 4 N -0.212 5.212 5 C -0.010 4.010 6 C -0.131 4.131 7 C -0.096 4.096 8 C 0.032 3.968 9 C -0.311 4.311 10 C -0.073 4.073 11 C -0.307 4.307 12 C 0.101 3.899 13 C -0.567 4.567 14 H 0.102 0.898 15 C -0.210 4.210 16 N -0.418 5.418 17 Si 0.937 3.063 18 H -0.195 1.195 19 H -0.179 1.179 20 H -0.198 1.198 21 N -0.261 5.261 22 C -0.094 4.094 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.207 0.793 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.160 0.840 32 H 0.130 0.870 33 H 0.093 0.907 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.913 5.815 3.563 9.711 hybrid contribution -1.127 -2.657 1.853 3.430 sum -8.040 3.158 5.416 10.196 Atomic orbital electron populations 1.20760 0.86778 1.04292 1.03875 1.21206 0.99627 0.92603 1.00661 1.23304 0.89009 0.99183 0.95115 1.67470 1.09539 1.30450 1.13778 1.21319 0.97014 0.87811 0.94882 1.20367 0.89153 1.01593 1.01991 1.19679 0.94364 0.92703 1.02864 1.19835 0.92170 0.92333 0.92507 1.21540 1.06168 0.96189 1.07173 1.21308 0.93210 0.96993 0.95768 1.22086 1.03052 0.99925 1.05593 1.18951 0.91531 0.87341 0.92087 1.20686 1.04093 1.26815 1.05123 0.89842 1.28326 1.06185 0.90651 0.95837 1.70343 1.00531 1.32690 1.38195 0.82992 0.69761 0.78235 0.75355 1.19456 1.17851 1.19767 1.68408 1.08068 1.25081 1.24494 1.21746 0.91585 0.99937 0.96165 0.89218 0.89217 0.90873 0.79308 0.92306 0.90295 0.92820 0.85302 0.84002 0.86996 0.90653 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 10.03 71.24 0.71 -0.95 16 2 C -0.14 -3.76 5.89 -19.81 -0.12 -3.87 16 3 C 0.09 2.66 10.85 84.70 0.92 3.58 16 4 N -0.50 -18.83 10.26 -183.00 -1.88 -20.71 16 5 C 0.13 5.36 6.81 42.84 0.29 5.65 16 6 C -0.07 -3.18 8.89 71.24 0.63 -2.55 16 7 C -0.09 -3.93 5.64 -19.95 -0.11 -4.04 16 8 C 0.17 8.28 5.56 42.17 0.23 8.52 16 9 C -0.29 -12.14 9.49 22.78 0.22 -11.93 16 10 C -0.05 -2.04 10.15 22.39 0.23 -1.81 16 11 C -0.28 -13.71 9.83 22.88 0.22 -13.49 16 12 C 0.23 12.37 5.95 40.26 0.24 12.61 16 13 C -0.54 -29.35 9.05 23.48 0.21 -29.14 16 14 H 0.08 4.35 7.93 -2.91 -0.02 4.33 16 15 C 0.01 0.51 5.27 85.29 0.45 0.96 16 16 N -0.80 -45.62 13.11 21.84 0.29 -45.33 16 17 Si 1.12 44.82 29.98 68.60 2.06 46.87 16 18 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 19 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 21 N -0.55 -29.40 6.37 -178.20 -1.13 -30.53 16 22 C -0.07 -2.28 9.21 22.69 0.21 -2.07 16 23 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.09 1.14 8.09 -2.39 -0.02 1.12 16 25 H 0.07 1.16 8.09 -2.38 -0.02 1.14 16 26 H 0.19 3.80 8.06 -2.91 -0.02 3.77 16 27 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.05 2.48 6.79 -2.38 -0.02 2.47 16 30 H 0.13 4.58 7.94 -2.91 -0.02 4.56 16 31 H 0.14 4.68 8.06 -2.91 -0.02 4.66 16 32 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 33 H 0.28 17.05 6.84 -92.71 -0.63 16.42 16 34 H 0.15 4.33 7.99 -2.91 -0.02 4.31 16 Total: -1.00 -66.57 295.96 4.91 -61.66 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 1.23 Total: 26.57 kcal Atomic # 6 Polarization: -42.87 SS G_CDS: 4.34 Total: -38.53 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -2.73 Total: -96.57 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.06 Total: 46.87 kcal Total: -66.57 4.91 -61.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239893263.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.748 kcal (2) G-P(sol) polarization free energy of solvation -66.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds