Wall clock time and date at job start Sun Mar 29 2020 23:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38281 * 119.88820 * 2 1 4 4 C 1.37958 * 120.22134 * 179.76506 * 3 2 1 5 5 C 1.39668 * 120.00700 * 0.51254 * 4 3 2 6 6 C 1.47971 * 120.11337 * 179.76634 * 5 4 3 7 7 C 1.39892 * 119.44990 * 359.70584 * 6 5 4 8 8 C 1.36605 * 119.46630 * 179.74461 * 7 6 5 9 9 C 1.41300 * 118.41563 * 0.51700 * 8 7 6 10 10 C 1.41046 * 120.55737 * 179.74790 * 9 8 7 11 11 H 1.07995 * 120.00299 * 155.65092 * 10 9 8 12 12 C 1.40027 * 119.99929 * 335.65361 * 10 9 8 13 13 N 1.30789 * 119.99727 * 343.27171 * 12 10 9 14 14 Si 1.86802 * 120.00074 * 163.27674 * 12 10 9 15 15 H 1.48496 * 109.47324 * 59.99611 * 14 12 10 16 16 H 1.48500 * 109.47110 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46826 * 299.99693 * 14 12 10 18 18 C 1.40953 * 118.88823 * 359.72720 * 9 8 7 19 19 N 1.31259 * 120.40065 * 0.02562 * 18 9 8 20 20 C 1.39476 * 119.77993 * 359.74267 * 5 4 3 21 21 C 1.38653 * 119.77518 * 0.02562 * 20 5 4 22 22 N 1.39689 * 119.99923 * 180.02562 * 21 20 5 23 23 H 1.09001 * 109.47065 * 269.72470 * 1 2 3 24 24 H 1.08994 * 109.46928 * 149.72318 * 1 2 3 25 25 H 1.09002 * 109.47485 * 29.72100 * 1 2 3 26 26 H 1.08005 * 119.88776 * 0.02570 * 3 2 1 27 27 H 1.08003 * 119.99752 * 180.25674 * 4 3 2 28 28 H 1.08002 * 120.26441 * 0.02562 * 7 6 5 29 29 H 1.08001 * 120.79367 * 180.22122 * 8 7 6 30 30 H 0.97008 * 119.99777 * 180.02562 * 13 12 10 31 31 H 1.07999 * 119.79907 * 180.02562 * 18 9 8 32 32 H 1.07991 * 120.11136 * 179.97438 * 20 5 4 33 33 H 0.96998 * 119.99524 * 179.97438 * 22 21 20 34 34 H 0.97001 * 120.00198 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1989 0.0000 4 6 3.5756 1.2069 0.0049 5 6 4.2811 0.0016 -0.0010 6 6 5.7608 0.0075 -0.0010 7 6 6.4438 1.2283 -0.0013 8 6 7.8098 1.2342 0.0040 9 6 8.4875 -0.0057 -0.0015 10 6 9.8972 -0.0523 -0.0017 11 1 10.4088 -0.9235 0.3800 12 6 10.6335 1.0310 -0.4969 13 7 10.0503 1.9297 -1.2469 14 14 12.4487 1.1923 -0.0862 15 1 13.1783 0.0017 -0.5914 16 1 12.9941 2.4163 -0.7262 17 1 12.6164 1.2876 1.3863 18 6 7.7312 -1.1951 -0.0064 19 7 6.4195 -1.1482 -0.0062 20 6 3.5863 -1.2078 -0.0063 21 6 2.1998 -1.2053 -0.0063 22 7 1.4992 -2.4138 -0.0111 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 -0.8875 -0.5181 25 1 -0.3634 0.8925 -0.5095 26 1 1.6524 2.1321 0.0004 27 1 4.1101 2.1454 0.0091 28 1 5.8954 2.1588 -0.0012 29 1 8.3587 2.1643 0.0074 30 1 10.5605 2.6800 -1.5903 31 1 8.2341 -2.1509 -0.0102 32 1 4.1264 -2.1429 -0.0113 33 1 0.5292 -2.4120 -0.0107 34 1 1.9827 -3.2547 -0.0148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240959386.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:08 Heat of formation + Delta-G solvation = 36.189757 kcal Electronic energy + Delta-G solvation = -17246.004939 eV Core-core repulsion = 14528.291193 eV Total energy + Delta-G solvation = -2717.713746 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -39.20726 -38.04938 -34.62889 -33.89099 -32.25794 -30.73619 -29.91494 -28.38372 -26.90165 -24.69723 -22.47850 -21.80922 -20.89941 -19.93514 -17.50420 -16.73555 -16.55365 -15.52562 -15.03735 -14.58869 -14.15962 -13.81508 -13.67867 -13.31933 -13.09778 -12.64514 -12.53747 -12.08530 -11.88711 -11.72201 -11.69241 -11.35852 -11.21006 -10.77595 -10.66301 -10.42547 -10.18366 -9.88313 -9.48730 -8.47639 -8.31793 -8.06544 -7.37470 -7.04228 -6.90311 -4.55543 1.67554 2.19033 2.72158 2.93595 2.95787 2.98199 3.20168 3.73748 4.20408 4.30359 4.71132 5.26236 5.31875 5.49706 5.61824 5.66168 5.76973 5.92007 6.01477 6.10457 6.23862 6.40521 6.49472 6.66206 6.68912 6.79816 6.91977 6.97281 7.09221 7.18918 7.32234 7.46691 7.70168 7.77839 7.89051 7.95672 8.07826 8.32229 8.51556 8.62233 9.57712 9.88731 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.053416 B = 0.004250 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.058057 B = 6586.775009 C = 7032.749123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.198 4.198 3 C -0.073 4.073 4 C -0.183 4.183 5 C 0.059 3.941 6 C -0.008 4.008 7 C -0.119 4.119 8 C -0.146 4.146 9 C 0.070 3.930 10 C -0.435 4.435 11 H 0.086 0.914 12 C 0.072 3.928 13 N -0.777 5.777 14 Si 0.917 3.083 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.261 1.261 18 C -0.019 4.019 19 N -0.447 5.447 20 C -0.185 4.185 21 C 0.212 3.788 22 N -0.885 5.885 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.287 0.713 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.391 0.609 34 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.688 -1.120 1.525 9.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.203 4.203 3 C -0.092 4.092 4 C -0.204 4.204 5 C 0.058 3.942 6 C -0.142 4.142 7 C -0.139 4.139 8 C -0.171 4.171 9 C 0.065 3.935 10 C -0.464 4.464 11 H 0.104 0.896 12 C -0.149 4.149 13 N -0.400 5.400 14 Si 0.740 3.260 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.185 1.185 18 C -0.184 4.184 19 N -0.154 5.154 20 C -0.208 4.208 21 C 0.109 3.891 22 N -0.426 5.426 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.130 0.870 27 H 0.135 0.865 28 H 0.121 0.879 29 H 0.145 0.855 30 H 0.098 0.902 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.220 0.780 34 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -10.095 -1.596 1.366 10.311 hybrid contribution 1.249 0.670 0.016 1.417 sum -8.846 -0.926 1.382 9.001 Atomic orbital electron populations 1.20471 0.92363 1.01419 1.00942 1.19168 0.94903 0.92000 1.14193 1.20524 0.93780 0.96183 0.98665 1.20947 0.93537 0.97447 1.08459 1.18413 0.91232 0.92023 0.92552 1.18836 0.90969 0.89041 1.15337 1.21336 0.95234 0.96929 1.00399 1.21339 0.92541 0.98904 1.04279 1.18614 0.94327 0.92184 0.88392 1.19648 0.91199 1.01857 1.33719 0.89564 1.26086 1.01915 0.94438 0.92412 1.69777 1.39214 1.09851 1.21200 0.86214 0.80776 0.78830 0.80173 1.18626 1.20057 1.18501 1.22454 0.88561 0.97032 1.10362 1.66916 1.10534 1.29051 1.08894 1.20648 0.90856 0.98941 1.10339 1.17496 0.91135 0.85733 0.94701 1.42464 1.08369 1.05248 1.86506 0.92564 0.92982 0.92231 0.86983 0.86537 0.87920 0.85544 0.90154 0.85405 0.85639 0.78047 0.77818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 9.56 36.01 0.34 -0.74 16 2 C -0.20 -3.05 5.90 -104.31 -0.62 -3.67 16 3 C -0.07 -1.17 9.67 -39.67 -0.38 -1.56 16 4 C -0.18 -3.41 9.41 -39.15 -0.37 -3.78 16 5 C 0.06 1.26 5.88 -104.91 -0.62 0.64 16 6 C -0.01 -0.19 6.74 -82.75 -0.56 -0.75 16 7 C -0.12 -2.82 9.38 -39.55 -0.37 -3.19 16 8 C -0.15 -3.70 8.74 -39.01 -0.34 -4.05 16 9 C 0.07 1.80 5.59 -106.64 -0.60 1.21 16 10 C -0.44 -10.86 9.07 -37.85 -0.34 -11.20 16 11 H 0.09 2.02 7.90 -52.49 -0.41 1.60 16 12 C 0.07 1.69 5.19 -17.33 -0.09 1.60 16 13 N -0.78 -18.89 10.91 55.55 0.61 -18.29 16 14 Si 0.92 17.36 29.59 -169.99 -5.03 12.33 16 15 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 16 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 17 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 18 C -0.02 -0.47 10.97 -16.77 -0.18 -0.65 16 19 N -0.45 -11.14 9.38 -9.10 -0.09 -11.23 16 20 C -0.18 -3.59 9.42 -38.97 -0.37 -3.96 16 21 C 0.21 3.48 6.73 -83.83 -0.56 2.91 16 22 N -0.88 -10.99 8.99 32.39 0.29 -10.70 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.52 6.53 -51.93 -0.34 0.18 16 25 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 26 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 27 H 0.12 2.05 6.14 -52.48 -0.32 1.73 16 28 H 0.10 2.16 6.14 -52.49 -0.32 1.84 16 29 H 0.13 3.23 6.20 -52.49 -0.33 2.91 16 30 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 31 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 32 H 0.13 2.51 7.52 -52.49 -0.39 2.11 16 33 H 0.39 3.91 6.81 -40.82 -0.28 3.64 16 34 H 0.39 4.39 8.84 -40.82 -0.36 4.03 16 LS Contribution 289.15 15.07 4.36 4.36 Total: -1.00 -27.97 289.15 -8.49 -36.46 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -3.58 Total: 14.24 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -5.05 Total: -27.18 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.81 Total: -40.21 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.97 -8.49 -36.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240959386.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.654 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds