Wall clock time and date at job start Sun Mar 29 2020 23:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38281 * 119.88820 * 2 1 4 4 C 1.37958 * 120.22134 * 179.76506 * 3 2 1 5 5 C 1.39668 * 120.00700 * 0.51254 * 4 3 2 6 6 C 1.47971 * 120.11337 * 179.76634 * 5 4 3 7 7 C 1.39892 * 119.44990 * 359.70584 * 6 5 4 8 8 C 1.36605 * 119.46630 * 179.74461 * 7 6 5 9 9 C 1.41300 * 118.41563 * 0.51700 * 8 7 6 10 10 C 1.41046 * 120.55737 * 179.74790 * 9 8 7 11 11 H 1.07995 * 120.00299 * 155.65092 * 10 9 8 12 12 C 1.40027 * 119.99929 * 335.65361 * 10 9 8 13 13 N 1.30789 * 119.99727 * 343.27171 * 12 10 9 14 14 Si 1.86802 * 120.00074 * 163.27674 * 12 10 9 15 15 H 1.48496 * 109.47324 * 59.99611 * 14 12 10 16 16 H 1.48500 * 109.47110 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46826 * 299.99693 * 14 12 10 18 18 C 1.40953 * 118.88823 * 359.72720 * 9 8 7 19 19 N 1.31259 * 120.40065 * 0.02562 * 18 9 8 20 20 C 1.39476 * 119.77993 * 359.74267 * 5 4 3 21 21 C 1.38653 * 119.77518 * 0.02562 * 20 5 4 22 22 N 1.39689 * 119.99923 * 180.02562 * 21 20 5 23 23 H 1.09001 * 109.47065 * 269.72470 * 1 2 3 24 24 H 1.08994 * 109.46928 * 149.72318 * 1 2 3 25 25 H 1.09002 * 109.47485 * 29.72100 * 1 2 3 26 26 H 1.08005 * 119.88776 * 0.02570 * 3 2 1 27 27 H 1.08003 * 119.99752 * 180.25674 * 4 3 2 28 28 H 1.08002 * 120.26441 * 0.02562 * 7 6 5 29 29 H 1.08001 * 120.79367 * 180.22122 * 8 7 6 30 30 H 0.97008 * 119.99777 * 180.02562 * 13 12 10 31 31 H 1.07999 * 119.79907 * 180.02562 * 18 9 8 32 32 H 1.07991 * 120.11136 * 179.97438 * 20 5 4 33 33 H 0.96998 * 119.99524 * 179.97438 * 22 21 20 34 34 H 0.97001 * 120.00198 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1989 0.0000 4 6 3.5756 1.2069 0.0049 5 6 4.2811 0.0016 -0.0010 6 6 5.7608 0.0075 -0.0010 7 6 6.4438 1.2283 -0.0013 8 6 7.8098 1.2342 0.0040 9 6 8.4875 -0.0057 -0.0015 10 6 9.8972 -0.0523 -0.0017 11 1 10.4088 -0.9235 0.3800 12 6 10.6335 1.0310 -0.4969 13 7 10.0503 1.9297 -1.2469 14 14 12.4487 1.1923 -0.0862 15 1 13.1783 0.0017 -0.5914 16 1 12.9941 2.4163 -0.7262 17 1 12.6164 1.2876 1.3863 18 6 7.7312 -1.1951 -0.0064 19 7 6.4195 -1.1482 -0.0062 20 6 3.5863 -1.2078 -0.0063 21 6 2.1998 -1.2053 -0.0063 22 7 1.4992 -2.4138 -0.0111 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 -0.8875 -0.5181 25 1 -0.3634 0.8925 -0.5095 26 1 1.6524 2.1321 0.0004 27 1 4.1101 2.1454 0.0091 28 1 5.8954 2.1588 -0.0012 29 1 8.3587 2.1643 0.0074 30 1 10.5605 2.6800 -1.5903 31 1 8.2341 -2.1509 -0.0102 32 1 4.1264 -2.1429 -0.0113 33 1 0.5292 -2.4120 -0.0107 34 1 1.9827 -3.2547 -0.0148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240959386.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:07 Heat of formation + Delta-G solvation = 20.377700 kcal Electronic energy + Delta-G solvation = -17246.690601 eV Core-core repulsion = 14528.291193 eV Total energy + Delta-G solvation = -2718.399409 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.73697 -39.69600 -36.27679 -35.33210 -33.59851 -32.61048 -31.59615 -29.66894 -28.42130 -26.27952 -24.08992 -23.47694 -22.48803 -21.41394 -19.35431 -18.21029 -17.78196 -17.20508 -16.48238 -16.27051 -15.70656 -15.46729 -14.86549 -14.66598 -14.53750 -14.30940 -14.08727 -13.56444 -13.39956 -13.29915 -13.02174 -12.91015 -12.77338 -12.27615 -12.02741 -11.86905 -11.62801 -11.53032 -11.18059 -10.26381 -10.05397 -9.93380 -9.03082 -8.75391 -8.23772 -6.44431 0.12334 0.81995 0.99331 1.18428 1.38802 1.51353 1.60026 2.15461 2.63367 3.11139 3.14582 3.76591 3.82695 4.06441 4.20221 4.37992 4.42483 4.67072 4.70426 4.77927 4.89335 4.93285 4.98580 5.00706 5.10159 5.21176 5.31886 5.35499 5.51466 5.72219 5.79546 5.82982 5.94874 6.10006 6.17511 6.43601 6.65920 6.70466 6.73464 7.10910 7.67499 8.15255 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.053416 B = 0.004250 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.058057 B = 6586.775009 C = 7032.749123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.189 4.189 3 C -0.071 4.071 4 C -0.193 4.193 5 C 0.021 3.979 6 C -0.013 4.013 7 C -0.126 4.126 8 C -0.162 4.162 9 C 0.042 3.958 10 C -0.467 4.467 11 H 0.092 0.908 12 C 0.034 3.966 13 N -0.809 5.809 14 Si 0.993 3.007 15 H -0.256 1.256 16 H -0.265 1.265 17 H -0.258 1.258 18 C -0.040 4.040 19 N -0.460 5.460 20 C -0.202 4.202 21 C 0.212 3.788 22 N -0.869 5.869 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.147 0.853 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.296 0.704 31 H 0.139 0.861 32 H 0.109 0.891 33 H 0.406 0.594 34 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 -0.673 1.670 11.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.194 4.194 3 C -0.089 4.089 4 C -0.214 4.214 5 C 0.020 3.980 6 C -0.148 4.148 7 C -0.146 4.146 8 C -0.188 4.188 9 C 0.038 3.962 10 C -0.495 4.495 11 H 0.110 0.890 12 C -0.184 4.184 13 N -0.432 5.432 14 Si 0.812 3.188 15 H -0.180 1.180 16 H -0.189 1.189 17 H -0.182 1.182 18 C -0.204 4.204 19 N -0.167 5.167 20 C -0.226 4.226 21 C 0.107 3.893 22 N -0.411 5.411 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.164 0.836 27 H 0.137 0.863 28 H 0.144 0.856 29 H 0.137 0.863 30 H 0.107 0.893 31 H 0.156 0.844 32 H 0.127 0.873 33 H 0.238 0.762 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -12.101 -1.190 1.507 12.252 hybrid contribution 1.559 0.497 -0.045 1.637 sum -10.541 -0.692 1.463 10.665 Atomic orbital electron populations 1.20575 0.88937 1.03192 1.02458 1.19716 0.97349 0.91142 1.11209 1.20921 0.92766 0.98072 0.97133 1.21075 0.94911 0.96554 1.08874 1.18474 0.89756 0.93883 0.95925 1.19443 0.92899 0.88763 1.13711 1.21591 0.94877 0.98096 1.00006 1.21392 0.93327 0.98603 1.05454 1.18917 0.95319 0.92607 0.89376 1.19934 0.91222 1.03260 1.35095 0.89033 1.26981 1.06529 0.93400 0.91448 1.69816 1.41291 1.10450 1.21681 0.85077 0.74625 0.79203 0.79859 1.17954 1.18936 1.18215 1.22690 0.88951 0.97483 1.11267 1.66971 1.10468 1.29758 1.09525 1.20604 0.92465 0.97789 1.11697 1.17557 0.90182 0.87647 0.93894 1.42404 1.09177 1.04353 1.85166 0.90990 0.91332 0.90513 0.83564 0.86264 0.85609 0.86254 0.89258 0.84366 0.87262 0.76198 0.77036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.56 71.24 0.68 -1.02 16 2 C -0.19 -5.18 5.90 -19.67 -0.12 -5.30 16 3 C -0.07 -2.06 9.67 22.21 0.21 -1.84 16 4 C -0.19 -7.02 9.41 22.55 0.21 -6.81 16 5 C 0.02 0.91 5.88 -20.05 -0.12 0.79 16 6 C -0.01 -0.66 6.74 41.95 0.28 -0.38 16 7 C -0.13 -6.20 9.38 22.29 0.21 -5.99 16 8 C -0.16 -8.64 8.74 22.64 0.20 -8.45 16 9 C 0.04 2.31 5.59 -21.17 -0.12 2.19 16 10 C -0.47 -24.13 9.07 23.39 0.21 -23.92 16 11 H 0.09 4.44 7.90 -2.91 -0.02 4.42 16 12 C 0.03 1.63 5.19 85.28 0.44 2.07 16 13 N -0.81 -40.21 10.91 21.84 0.24 -39.97 16 14 Si 0.99 35.58 29.59 68.60 2.03 37.61 16 15 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 16 H -0.27 -8.96 7.11 99.48 0.71 -8.25 16 17 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 18 C -0.04 -2.11 10.97 85.44 0.94 -1.17 16 19 N -0.46 -23.98 9.38 -182.71 -1.71 -25.69 16 20 C -0.20 -7.89 9.42 22.67 0.21 -7.67 16 21 C 0.21 6.52 6.73 38.18 0.26 6.78 16 22 N -0.87 -19.23 8.99 -51.45 -0.46 -19.70 16 23 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.07 1.02 6.53 -2.39 -0.02 1.01 16 25 H 0.08 1.17 8.08 -2.39 -0.02 1.16 16 26 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 27 H 0.12 4.13 6.14 -2.91 -0.02 4.11 16 28 H 0.13 5.41 6.14 -2.91 -0.02 5.39 16 29 H 0.12 6.39 6.20 -2.91 -0.02 6.37 16 30 H 0.30 13.16 8.30 -92.70 -0.77 12.39 16 31 H 0.14 6.69 8.06 -2.91 -0.02 6.67 16 32 H 0.11 4.51 7.52 -2.92 -0.02 4.49 16 33 H 0.41 6.58 6.81 -92.71 -0.63 5.94 16 34 H 0.40 8.15 8.84 -92.71 -0.82 7.33 16 Total: -1.00 -62.91 289.15 3.30 -59.61 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -0.30 Total: 38.86 kcal Atomic # 6 Polarization: -54.23 SS G_CDS: 3.51 Total: -50.72 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -1.94 Total: -85.36 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.61 kcal Total: -62.91 3.30 -59.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240959386.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.986 kcal (2) G-P(sol) polarization free energy of solvation -62.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds