Wall clock time and date at job start Sun Mar 29 2020 23:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38292 * 119.88442 * 2 1 4 4 C 1.37940 * 120.23282 * 179.76673 * 3 2 1 5 5 C 1.39752 * 119.99237 * 0.48837 * 4 3 2 6 6 C 1.47828 * 120.11553 * 179.79145 * 5 4 3 7 7 C 1.39680 * 120.64884 * 129.98209 * 6 5 4 8 8 C 1.38386 * 118.47362 * 179.97438 * 7 6 5 9 9 C 1.39064 * 119.72724 * 359.97438 * 8 7 6 10 10 N 1.31273 * 121.33382 * 0.02562 * 9 8 7 11 11 C 1.33702 * 121.64010 * 359.72858 * 10 9 8 12 12 C 1.40821 * 119.93918 * 180.26401 * 11 10 9 13 13 H 1.07997 * 120.00053 * 180.26454 * 12 11 10 14 14 C 1.40152 * 119.99835 * 0.27043 * 12 11 10 15 15 N 1.30687 * 120.00265 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99552 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47440 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47222 * 119.99917 * 16 14 12 19 19 H 1.48505 * 109.46990 * 239.99337 * 16 14 12 20 20 C 1.39545 * 119.76946 * 359.76840 * 5 4 3 21 21 C 1.38624 * 119.77183 * 359.97438 * 20 5 4 22 22 N 1.39682 * 119.99861 * 179.97438 * 21 20 5 23 23 H 1.09002 * 109.47152 * 269.72122 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72223 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72203 * 1 2 3 26 26 H 1.07995 * 119.88399 * 0.02562 * 3 2 1 27 27 H 1.07997 * 120.00975 * 180.26092 * 4 3 2 28 28 H 1.07999 * 120.76394 * 359.97438 * 7 6 5 29 29 H 1.08006 * 120.13882 * 180.02562 * 8 7 6 30 30 H 1.08002 * 119.33033 * 179.97438 * 9 8 7 31 31 H 0.97006 * 119.99973 * 180.02562 * 15 14 12 32 32 H 1.08001 * 120.11834 * 179.97438 * 20 5 4 33 33 H 0.97001 * 120.00168 * 179.97438 * 22 21 20 34 34 H 0.97001 * 120.00462 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1990 0.0000 4 6 3.5754 1.2074 0.0049 5 6 4.2814 0.0013 -0.0005 6 6 5.7597 0.0072 0.0000 7 6 6.4745 -0.7664 0.9174 8 6 7.8572 -0.7274 0.8775 9 6 8.4976 0.0709 -0.0640 10 7 7.8167 0.7944 -0.9221 11 6 6.4798 0.7937 -0.9347 12 6 5.7854 1.5793 -1.8748 13 1 4.7055 1.5828 -1.8831 14 6 6.4959 2.3566 -2.7996 15 7 7.8027 2.3527 -2.7893 16 14 5.5748 3.3993 -4.0461 17 1 4.1127 3.2297 -3.8494 18 1 5.9372 4.8275 -3.8611 19 1 5.9423 2.9693 -5.4192 20 6 3.5860 -1.2085 -0.0059 21 6 2.1998 -1.2057 -0.0053 22 7 1.4990 -2.4139 -0.0113 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 -0.8875 -0.5181 25 1 -0.3633 0.8925 -0.5095 26 1 1.6523 2.1321 0.0004 27 1 4.1099 2.1459 0.0091 28 1 5.9599 -1.3809 1.6413 29 1 8.4366 -1.3152 1.5741 30 1 9.5770 0.0968 -0.0892 31 1 8.2944 2.8910 -3.4292 32 1 4.1259 -2.1439 -0.0105 33 1 0.5290 -2.4120 -0.0105 34 1 1.9822 -3.2550 -0.0161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240964913.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:43 Heat of formation + Delta-G solvation = 48.593470 kcal Electronic energy + Delta-G solvation = -17875.876888 eV Core-core repulsion = 15158.701007 eV Total energy + Delta-G solvation = -2717.175881 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -39.12193 -37.84574 -34.25061 -33.66349 -32.47230 -30.37617 -29.72266 -28.31318 -26.20525 -25.25341 -22.24221 -21.47621 -21.09308 -19.74865 -17.49567 -16.53952 -16.33918 -15.50958 -14.77289 -14.41754 -14.23671 -13.69643 -13.54007 -13.44995 -12.94392 -12.53889 -12.21844 -11.94466 -11.86897 -11.78439 -11.23620 -11.15641 -10.99038 -10.86489 -10.38940 -10.27495 -10.12034 -9.58018 -9.42087 -8.43651 -7.97686 -7.59820 -7.36786 -6.83617 -6.45269 -4.52041 1.94372 2.32685 2.76248 3.06777 3.08156 3.13988 3.21300 3.92550 4.25990 4.58259 4.72990 5.36238 5.42314 5.66975 5.83009 5.86773 5.89741 6.04214 6.10765 6.21587 6.25365 6.32628 6.49812 6.58993 6.77151 6.83046 6.95083 7.08969 7.22580 7.32821 7.44592 7.50130 7.66851 7.81397 8.02103 8.04476 8.12126 8.26300 8.61248 8.91256 10.06674 10.25275 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.008392 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.996493 B = 3335.840443 C = 4658.727238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.195 4.195 3 C -0.079 4.079 4 C -0.157 4.157 5 C 0.067 3.933 6 C -0.236 4.236 7 C -0.033 4.033 8 C -0.323 4.323 9 C 0.131 3.869 10 N -0.483 5.483 11 C 0.267 3.733 12 C -0.418 4.418 13 H 0.098 0.902 14 C 0.067 3.933 15 N -0.709 5.709 16 Si 0.903 3.097 17 H -0.256 1.256 18 H -0.272 1.272 19 H -0.272 1.272 20 C -0.201 4.201 21 C 0.210 3.790 22 N -0.887 5.887 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.273 0.727 32 H 0.111 0.889 33 H 0.391 0.609 34 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.492 -3.573 2.793 10.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.200 4.200 3 C -0.098 4.098 4 C -0.177 4.177 5 C 0.066 3.934 6 C -0.240 4.240 7 C -0.057 4.057 8 C -0.346 4.346 9 C -0.037 4.037 10 N -0.194 5.194 11 C 0.144 3.856 12 C -0.448 4.448 13 H 0.116 0.884 14 C -0.159 4.159 15 N -0.329 5.329 16 Si 0.727 3.273 17 H -0.180 1.180 18 H -0.197 1.197 19 H -0.198 1.198 20 C -0.224 4.224 21 C 0.107 3.893 22 N -0.428 5.428 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.129 0.871 27 H 0.142 0.858 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.219 0.781 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -8.873 -2.870 2.033 9.545 hybrid contribution -0.796 -0.530 0.077 0.959 sum -9.669 -3.401 2.111 10.465 Atomic orbital electron populations 1.20469 0.92494 1.01396 1.00806 1.19155 0.94791 0.91993 1.14043 1.20618 0.94122 0.96096 0.98917 1.21170 0.93081 0.98339 1.05111 1.18454 0.92279 0.91509 0.91207 1.19394 0.90987 1.08815 1.04848 1.20880 0.93747 0.95218 0.95889 1.21211 0.94566 1.11366 1.07495 1.22597 0.98770 0.91618 0.90738 1.68766 1.07398 1.21010 1.22250 1.18536 0.87854 0.89152 0.90052 1.19934 0.95250 1.19254 1.10338 0.88441 1.26175 0.94844 0.96818 0.98057 1.70133 1.07071 1.27788 1.27953 0.86324 0.81244 0.79640 0.80136 1.17967 1.19688 1.19759 1.20655 0.91249 0.98046 1.12405 1.17405 0.90976 0.85688 0.95190 1.42436 1.08341 1.05148 1.86873 0.92669 0.93067 0.92224 0.87100 0.85829 0.88635 0.88794 0.86450 0.91541 0.87116 0.78078 0.78070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 9.56 36.01 0.34 -0.83 16 2 C -0.20 -3.21 5.91 -104.30 -0.62 -3.83 16 3 C -0.08 -1.40 9.67 -39.67 -0.38 -1.79 16 4 C -0.16 -3.26 7.56 -39.12 -0.30 -3.55 16 5 C 0.07 1.47 5.02 -104.92 -0.53 0.94 16 6 C -0.24 -5.77 5.53 -104.07 -0.58 -6.34 16 7 C -0.03 -0.75 9.66 -38.99 -0.38 -1.13 16 8 C -0.32 -7.28 10.10 -39.22 -0.40 -7.68 16 9 C 0.13 3.19 11.17 -17.48 -0.20 2.99 16 10 N -0.48 -13.29 7.85 -10.91 -0.09 -13.38 16 11 C 0.27 7.26 6.56 -84.71 -0.56 6.70 16 12 C -0.42 -11.04 7.97 -37.89 -0.30 -11.34 16 13 H 0.10 2.47 5.25 -52.49 -0.28 2.20 16 14 C 0.07 1.70 5.50 -17.32 -0.10 1.61 16 15 N -0.71 -18.71 11.46 55.56 0.64 -18.07 16 16 Si 0.90 18.61 29.56 -169.99 -5.02 13.58 16 17 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 C -0.20 -3.91 9.39 -38.95 -0.37 -4.27 16 21 C 0.21 3.54 6.73 -83.84 -0.56 2.97 16 22 N -0.89 -11.23 8.98 32.39 0.29 -10.94 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.56 6.53 -51.93 -0.34 0.22 16 25 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.12 2.66 7.26 -52.49 -0.38 2.28 16 28 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 30 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 31 H 0.27 6.50 8.29 -40.82 -0.34 6.17 16 32 H 0.11 2.07 8.05 -52.49 -0.42 1.64 16 33 H 0.39 4.08 6.81 -40.82 -0.28 3.80 16 34 H 0.39 4.34 8.84 -40.82 -0.36 3.98 16 LS Contribution 288.99 15.07 4.36 4.36 Total: -1.00 -29.52 288.99 -8.46 -37.97 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -3.72 Total: 12.03 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -4.90 Total: -25.55 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.84 Total: -42.39 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.58 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.52 -8.46 -37.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240964913.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.567 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds