Wall clock time and date at job start Sun Mar 29 2020 23:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38292 * 119.88442 * 2 1 4 4 C 1.37940 * 120.23282 * 179.76673 * 3 2 1 5 5 C 1.39752 * 119.99237 * 0.48837 * 4 3 2 6 6 C 1.47828 * 120.11553 * 179.79145 * 5 4 3 7 7 C 1.39680 * 120.64884 * 129.98209 * 6 5 4 8 8 C 1.38386 * 118.47362 * 179.97438 * 7 6 5 9 9 C 1.39064 * 119.72724 * 359.97438 * 8 7 6 10 10 N 1.31273 * 121.33382 * 0.02562 * 9 8 7 11 11 C 1.33702 * 121.64010 * 359.72858 * 10 9 8 12 12 C 1.40821 * 119.93918 * 180.26401 * 11 10 9 13 13 H 1.07997 * 120.00053 * 180.26454 * 12 11 10 14 14 C 1.40152 * 119.99835 * 0.27043 * 12 11 10 15 15 N 1.30687 * 120.00265 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99552 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47440 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47222 * 119.99917 * 16 14 12 19 19 H 1.48505 * 109.46990 * 239.99337 * 16 14 12 20 20 C 1.39545 * 119.76946 * 359.76840 * 5 4 3 21 21 C 1.38624 * 119.77183 * 359.97438 * 20 5 4 22 22 N 1.39682 * 119.99861 * 179.97438 * 21 20 5 23 23 H 1.09002 * 109.47152 * 269.72122 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72223 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72203 * 1 2 3 26 26 H 1.07995 * 119.88399 * 0.02562 * 3 2 1 27 27 H 1.07997 * 120.00975 * 180.26092 * 4 3 2 28 28 H 1.07999 * 120.76394 * 359.97438 * 7 6 5 29 29 H 1.08006 * 120.13882 * 180.02562 * 8 7 6 30 30 H 1.08002 * 119.33033 * 179.97438 * 9 8 7 31 31 H 0.97006 * 119.99973 * 180.02562 * 15 14 12 32 32 H 1.08001 * 120.11834 * 179.97438 * 20 5 4 33 33 H 0.97001 * 120.00168 * 179.97438 * 22 21 20 34 34 H 0.97001 * 120.00462 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1990 0.0000 4 6 3.5754 1.2074 0.0049 5 6 4.2814 0.0013 -0.0005 6 6 5.7597 0.0072 0.0000 7 6 6.4745 -0.7664 0.9174 8 6 7.8572 -0.7274 0.8775 9 6 8.4976 0.0709 -0.0640 10 7 7.8167 0.7944 -0.9221 11 6 6.4798 0.7937 -0.9347 12 6 5.7854 1.5793 -1.8748 13 1 4.7055 1.5828 -1.8831 14 6 6.4959 2.3566 -2.7996 15 7 7.8027 2.3527 -2.7893 16 14 5.5748 3.3993 -4.0461 17 1 4.1127 3.2297 -3.8494 18 1 5.9372 4.8275 -3.8611 19 1 5.9423 2.9693 -5.4192 20 6 3.5860 -1.2085 -0.0059 21 6 2.1998 -1.2057 -0.0053 22 7 1.4990 -2.4139 -0.0113 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 -0.8875 -0.5181 25 1 -0.3633 0.8925 -0.5095 26 1 1.6523 2.1321 0.0004 27 1 4.1099 2.1459 0.0091 28 1 5.9599 -1.3809 1.6413 29 1 8.4366 -1.3152 1.5741 30 1 9.5770 0.0968 -0.0892 31 1 8.2944 2.8910 -3.4292 32 1 4.1259 -2.1439 -0.0105 33 1 0.5290 -2.4120 -0.0105 34 1 1.9822 -3.2550 -0.0161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240964913.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:42 Heat of formation + Delta-G solvation = 31.363651 kcal Electronic energy + Delta-G solvation = -17876.624029 eV Core-core repulsion = 15158.701007 eV Total energy + Delta-G solvation = -2717.923022 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66323 -39.53421 -35.69534 -35.46509 -33.86923 -32.20306 -31.34607 -29.66866 -27.87133 -26.83724 -23.83251 -23.16813 -22.71898 -21.26290 -19.38185 -17.82437 -17.74635 -17.26172 -16.21044 -16.10343 -16.06645 -15.21368 -14.91509 -14.65969 -14.49065 -14.14337 -13.95788 -13.59409 -13.14835 -13.00890 -12.89391 -12.84382 -12.68252 -12.43009 -11.90240 -11.86837 -11.61999 -11.26194 -11.13151 -10.17636 -9.73417 -9.49585 -9.02902 -8.31992 -8.15776 -6.45017 0.38878 0.86259 0.99318 1.31696 1.38311 1.51814 1.53960 2.21348 2.83792 3.11312 3.15576 3.94787 4.11101 4.14932 4.28510 4.35506 4.50352 4.55614 4.75471 4.80721 4.92628 4.94127 4.96810 5.01377 5.19217 5.24146 5.37162 5.49339 5.58327 5.68429 5.81482 5.87257 6.13168 6.16952 6.24883 6.34552 6.72705 6.74621 7.00150 7.13929 8.17932 8.42283 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.008392 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.996493 B = 3335.840443 C = 4658.727238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.191 4.191 3 C -0.079 4.079 4 C -0.179 4.179 5 C 0.036 3.964 6 C -0.241 4.241 7 C -0.045 4.045 8 C -0.314 4.314 9 C 0.107 3.893 10 N -0.521 5.521 11 C 0.234 3.766 12 C -0.447 4.447 13 H 0.098 0.902 14 C 0.023 3.977 15 N -0.751 5.751 16 Si 0.977 3.023 17 H -0.253 1.253 18 H -0.263 1.263 19 H -0.266 1.266 20 C -0.212 4.212 21 C 0.215 3.785 22 N -0.868 5.868 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.136 0.864 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.138 0.862 31 H 0.279 0.721 32 H 0.112 0.888 33 H 0.406 0.594 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.335 -4.446 3.045 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.195 4.195 3 C -0.097 4.097 4 C -0.199 4.199 5 C 0.034 3.966 6 C -0.245 4.245 7 C -0.069 4.069 8 C -0.337 4.337 9 C -0.060 4.060 10 N -0.233 5.233 11 C 0.110 3.890 12 C -0.478 4.478 13 H 0.116 0.884 14 C -0.199 4.199 15 N -0.373 5.373 16 Si 0.797 3.203 17 H -0.176 1.176 18 H -0.187 1.187 19 H -0.191 1.191 20 C -0.235 4.235 21 C 0.110 3.890 22 N -0.410 5.410 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.153 0.847 27 H 0.118 0.882 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.155 0.845 31 H 0.090 0.910 32 H 0.130 0.870 33 H 0.237 0.763 34 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -11.727 -3.794 2.312 12.541 hybrid contribution -0.005 -0.405 0.139 0.428 sum -11.732 -4.199 2.451 12.700 Atomic orbital electron populations 1.20559 0.89057 1.03014 1.02413 1.19646 0.97223 0.91103 1.11565 1.20897 0.92938 0.98015 0.97885 1.21056 0.94516 0.97070 1.07304 1.18461 0.91154 0.93027 0.93942 1.19763 0.92863 1.07834 1.04073 1.21240 0.94115 0.95466 0.96097 1.21560 0.94876 1.10327 1.06908 1.23041 0.99880 0.91956 0.91076 1.68693 1.08098 1.22575 1.23958 1.18993 0.88290 0.90403 0.91321 1.20153 0.95440 1.20648 1.11527 0.88391 1.27053 0.95594 0.97638 0.99630 1.70223 1.08634 1.29158 1.29276 0.85226 0.79763 0.77945 0.77350 1.17608 1.18744 1.19061 1.20664 0.92625 0.97096 1.13149 1.17457 0.90252 0.87434 0.93864 1.42360 1.09145 1.04203 1.85329 0.90901 0.91146 0.91059 0.84656 0.88188 0.86046 0.85475 0.84458 0.91003 0.86986 0.76280 0.76914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.90 9.56 71.24 0.68 -1.22 16 2 C -0.19 -5.71 5.91 -19.65 -0.12 -5.82 16 3 C -0.08 -2.69 9.67 22.21 0.21 -2.47 16 4 C -0.18 -7.58 7.56 22.57 0.17 -7.41 16 5 C 0.04 1.59 5.02 -20.06 -0.10 1.49 16 6 C -0.24 -12.17 5.53 -19.51 -0.11 -12.28 16 7 C -0.05 -2.06 9.66 22.65 0.22 -1.84 16 8 C -0.31 -14.07 10.10 22.50 0.23 -13.84 16 9 C 0.11 5.31 11.17 84.97 0.95 6.26 16 10 N -0.52 -29.96 7.85 -188.43 -1.48 -31.44 16 11 C 0.23 13.30 6.56 40.37 0.26 13.56 16 12 C -0.45 -24.76 7.97 23.37 0.19 -24.58 16 13 H 0.10 5.21 5.25 -2.91 -0.02 5.20 16 14 C 0.02 1.20 5.50 85.33 0.47 1.67 16 15 N -0.75 -41.34 11.46 21.86 0.25 -41.09 16 16 Si 0.98 39.13 29.56 68.60 2.03 41.16 16 17 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 18 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 19 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 20 C -0.21 -8.10 9.39 22.68 0.21 -7.89 16 21 C 0.21 6.70 6.73 38.18 0.26 6.95 16 22 N -0.87 -18.81 8.98 -51.45 -0.46 -19.28 16 23 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.07 1.17 6.53 -2.39 -0.02 1.15 16 25 H 0.07 1.32 8.08 -2.38 -0.02 1.31 16 26 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 27 H 0.10 4.58 7.26 -2.91 -0.02 4.55 16 28 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 29 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 30 H 0.14 6.01 8.06 -2.91 -0.02 5.99 16 31 H 0.28 13.82 8.29 -92.70 -0.77 13.05 16 32 H 0.11 4.11 8.05 -2.91 -0.02 4.09 16 33 H 0.41 6.60 6.81 -92.71 -0.63 5.97 16 34 H 0.40 7.55 8.84 -92.71 -0.82 6.73 16 Total: -1.00 -66.98 288.99 3.56 -63.42 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.31 Total: 34.63 kcal Atomic # 6 Polarization: -50.94 SS G_CDS: 3.53 Total: -47.41 kcal Atomic # 7 Polarization: -90.11 SS G_CDS: -1.69 Total: -91.80 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -66.98 3.56 -63.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240964913.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.783 kcal (2) G-P(sol) polarization free energy of solvation -66.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds