Wall clock time and date at job start Sun Mar 29 2020 23:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38897 * 119.23988 * 2 1 4 4 C 1.36867 * 119.81713 * 180.02562 * 3 2 1 5 5 C 1.41129 * 118.40641 * 359.97438 * 4 3 2 6 6 C 1.40833 * 120.72203 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99671 * 151.14688 * 6 5 4 8 8 C 1.40022 * 120.00098 * 331.14772 * 6 5 4 9 9 N 1.30804 * 120.00322 * 348.80144 * 8 6 5 10 10 Si 1.86802 * 119.99955 * 168.79957 * 8 6 5 11 11 H 1.48504 * 109.46863 * 60.00444 * 10 8 6 12 12 H 1.48503 * 109.47191 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47292 * 300.00531 * 10 8 6 14 14 C 1.41948 * 118.54900 * 359.97438 * 5 4 3 15 15 C 1.47628 * 119.99619 * 179.97438 * 14 5 4 16 16 C 1.39836 * 120.07427 * 136.22919 * 15 14 5 17 17 C 1.37644 * 119.92564 * 180.02562 * 16 15 14 18 18 C 1.39210 * 120.07308 * 0.02562 * 17 16 15 19 19 N 1.39233 * 119.92292 * 179.97438 * 18 17 16 20 20 C 1.39214 * 120.14983 * 0.24875 * 18 17 16 21 21 C 1.37644 * 120.07529 * 359.44803 * 20 18 17 22 22 N 1.31717 * 119.24480 * 180.27629 * 2 1 3 23 23 H 1.08990 * 109.47058 * 90.00139 * 1 2 3 24 24 H 1.09002 * 109.46655 * 210.00070 * 1 2 3 25 25 H 1.09001 * 109.46892 * 329.99451 * 1 2 3 26 26 H 1.07994 * 120.09068 * 0.04638 * 3 2 1 27 27 H 1.08004 * 120.80032 * 179.97438 * 4 3 2 28 28 H 0.96993 * 120.00286 * 179.97438 * 9 8 6 29 29 H 1.08001 * 120.03450 * 0.04070 * 16 15 14 30 30 H 1.08002 * 119.95700 * 179.97438 * 17 16 15 31 31 H 0.97002 * 120.00205 * 359.97438 * 19 18 17 32 32 H 0.97002 * 120.00178 * 179.72040 * 19 18 17 33 33 H 1.08006 * 119.96057 * 179.70743 * 20 18 17 34 34 H 1.08000 * 120.03723 * 180.27390 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2120 0.0000 4 6 3.5541 1.2258 -0.0005 5 6 4.2379 -0.0088 -0.0005 6 6 5.6456 -0.0515 -0.0005 7 1 6.1605 -0.8867 0.4509 8 6 6.3776 0.9889 -0.5857 9 7 5.7693 1.8844 -1.3198 10 14 8.2231 1.0980 -0.3178 11 1 8.8722 -0.1330 -0.8362 12 1 8.7589 2.2806 -1.0389 13 1 8.5056 1.2328 1.1338 14 6 3.4759 -1.2064 0.0006 15 6 4.1584 -2.5154 0.0001 16 6 3.7085 -3.5406 0.8379 17 6 4.3475 -4.7597 0.8354 18 6 5.4408 -4.9726 0.0003 19 7 6.0851 -6.2068 0.0006 20 6 5.8948 -3.9523 -0.8309 21 6 5.2566 -2.7328 -0.8379 22 7 2.1505 -1.1493 -0.0055 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6346 2.1409 0.0008 27 1 4.0977 2.1590 -0.0010 28 1 6.2763 2.6052 -1.7248 29 1 2.8605 -3.3760 1.4861 30 1 4.0007 -5.5517 1.4826 31 1 5.7723 -6.9171 0.5825 32 1 6.8445 -6.3577 -0.5838 33 1 6.7462 -4.1192 -1.4741 34 1 5.6067 -1.9431 -1.4862 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241540722.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:23 Heat of formation + Delta-G solvation = 21.096199 kcal Electronic energy + Delta-G solvation = -17845.795698 eV Core-core repulsion = 15127.427446 eV Total energy + Delta-G solvation = -2718.368252 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -40.67627 -39.50040 -36.14646 -35.46348 -32.98105 -32.51865 -31.65557 -29.69382 -28.83635 -25.93658 -23.88033 -23.54787 -22.31431 -21.57610 -19.21973 -17.90281 -17.56940 -17.26265 -17.01292 -16.15290 -15.66531 -15.03749 -14.93307 -14.53171 -14.28251 -14.11347 -14.02933 -13.72957 -13.43238 -13.15549 -13.03717 -12.78923 -12.60264 -12.51571 -12.12753 -11.71479 -11.60564 -11.29557 -11.11220 -10.11165 -9.87186 -9.67560 -9.32468 -8.66201 -8.07441 -6.30600 0.43304 0.73841 0.94921 1.30761 1.37968 1.48824 1.52503 2.19029 2.75129 3.13258 3.17048 3.71738 3.94895 4.18722 4.26874 4.41117 4.57463 4.66707 4.73601 4.84504 4.97910 5.00911 5.04790 5.10289 5.22055 5.27807 5.37776 5.39472 5.52853 5.69123 5.84660 5.97931 6.10997 6.13520 6.20831 6.56946 6.75560 6.80335 6.87812 7.16588 7.79358 8.29803 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.010219 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.539843 B = 2739.369727 C = 4691.208525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.019 4.019 3 C -0.155 4.155 4 C -0.149 4.149 5 C 0.047 3.953 6 C -0.458 4.458 7 H 0.082 0.918 8 C 0.035 3.965 9 N -0.825 5.825 10 Si 0.977 3.023 11 H -0.256 1.256 12 H -0.267 1.267 13 H -0.262 1.262 14 C 0.022 3.978 15 C -0.075 4.075 16 C -0.068 4.068 17 C -0.205 4.205 18 C 0.211 3.789 19 N -0.864 5.864 20 C -0.209 4.209 21 C -0.057 4.057 22 N -0.473 5.473 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.125 0.875 27 H 0.115 0.885 28 H 0.290 0.710 29 H 0.109 0.891 30 H 0.142 0.858 31 H 0.407 0.593 32 H 0.406 0.594 33 H 0.135 0.865 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.924 -8.622 1.752 9.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.160 4.160 3 C -0.175 4.175 4 C -0.175 4.175 5 C 0.043 3.957 6 C -0.487 4.487 7 H 0.100 0.900 8 C -0.180 4.180 9 N -0.451 5.451 10 Si 0.798 3.202 11 H -0.180 1.180 12 H -0.192 1.192 13 H -0.186 1.186 14 C -0.116 4.116 15 C -0.078 4.078 16 C -0.087 4.087 17 C -0.227 4.227 18 C 0.105 3.895 19 N -0.404 5.404 20 C -0.231 4.231 21 C -0.076 4.076 22 N -0.182 5.182 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.143 0.857 27 H 0.133 0.867 28 H 0.101 0.899 29 H 0.127 0.873 30 H 0.160 0.840 31 H 0.236 0.764 32 H 0.235 0.765 33 H 0.153 0.847 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.461 -9.136 1.591 9.388 hybrid contribution 1.253 1.190 -0.115 1.731 sum 2.714 -7.947 1.475 8.526 Atomic orbital electron populations 1.20335 0.88118 1.02366 1.01720 1.21110 0.97278 0.88189 1.09408 1.21540 0.94948 0.98517 1.02469 1.21459 0.93661 0.98447 1.03967 1.18739 0.95151 0.91548 0.90310 1.19579 0.91011 1.05786 1.32360 0.89981 1.26751 1.05735 0.93375 0.92126 1.69806 1.40485 1.11904 1.22938 0.85304 0.76054 0.79197 0.79653 1.17960 1.19175 1.18595 1.20026 0.88546 0.92716 1.10362 1.18282 0.97527 0.92083 0.99940 1.20986 0.98181 0.92549 0.97021 1.20590 0.99218 0.98188 1.04729 1.17786 0.91567 0.86891 0.93241 1.42186 1.37302 1.11336 1.49602 1.20604 1.04270 0.93141 1.05123 1.21058 0.93831 0.96233 0.96513 1.67038 1.09800 1.29922 1.11485 0.91974 0.92062 0.90330 0.85745 0.86705 0.89938 0.87251 0.84045 0.76353 0.76500 0.84722 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.41 10.15 71.24 0.72 -1.68 16 2 C -0.02 -0.90 6.79 42.73 0.29 -0.61 16 3 C -0.15 -7.38 9.64 22.11 0.21 -7.17 16 4 C -0.15 -7.98 8.71 22.66 0.20 -7.78 16 5 C 0.05 2.58 5.54 -21.02 -0.12 2.47 16 6 C -0.46 -24.17 6.70 23.34 0.16 -24.02 16 7 H 0.08 4.27 6.50 -2.91 -0.02 4.26 16 8 C 0.04 1.73 5.26 85.28 0.45 2.18 16 9 N -0.83 -42.24 10.91 21.84 0.24 -42.00 16 10 Si 0.98 37.51 29.57 68.60 2.03 39.54 16 11 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 12 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 13 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 14 C 0.02 1.16 6.42 42.42 0.27 1.44 16 15 C -0.08 -3.54 5.26 -20.02 -0.11 -3.65 16 16 C -0.07 -2.75 9.65 22.52 0.22 -2.53 16 17 C -0.20 -6.63 9.87 22.36 0.22 -6.41 16 18 C 0.21 6.36 6.76 38.43 0.26 6.62 16 19 N -0.86 -17.10 9.06 -51.27 -0.46 -17.56 16 20 C -0.21 -7.24 9.87 22.36 0.22 -7.02 16 21 C -0.06 -2.47 7.84 22.52 0.18 -2.29 16 22 N -0.47 -24.29 10.06 -171.19 -1.72 -26.01 16 23 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.08 2.34 8.07 -2.39 -0.02 2.32 16 26 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 27 H 0.12 6.25 6.34 -2.91 -0.02 6.23 16 28 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 29 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.41 6.07 8.83 -92.71 -0.82 5.25 16 32 H 0.41 6.38 8.83 -92.71 -0.82 5.56 16 33 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 34 H 0.11 5.12 6.75 -2.91 -0.02 5.10 16 Total: -1.00 -63.82 291.54 2.76 -61.06 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -0.50 Total: 35.44 kcal Atomic # 6 Polarization: -53.64 SS G_CDS: 3.17 Total: -50.47 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -1.95 Total: -85.57 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -63.82 2.76 -61.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241540722.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.159 kcal (2) G-P(sol) polarization free energy of solvation -63.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds