Wall clock time and date at job start Sun Mar 29 2020 23:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47493 * 2 1 4 4 N 1.29998 * 126.21814 * 269.97776 * 3 2 1 5 5 O 1.21279 * 110.46133 * 179.72248 * 4 3 2 6 6 C 1.34014 * 109.75247 * 0.46975 * 5 4 3 7 7 N 1.37962 * 126.65260 * 179.79916 * 6 5 4 8 8 C 1.34772 * 120.00416 * 359.68915 * 7 6 5 9 9 O 1.21566 * 119.99806 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00426 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00223 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46593 * 35.00173 * 11 10 8 13 13 C 1.52997 * 109.47092 * 275.00367 * 11 10 8 14 14 C 1.50693 * 109.47127 * 154.99809 * 11 10 8 15 15 H 1.08000 * 120.00093 * 34.06444 * 14 11 10 16 16 C 1.37885 * 120.00066 * 214.33522 * 14 11 10 17 17 N 1.31519 * 119.99598 * 181.93179 * 16 14 11 18 18 Si 1.86795 * 119.99707 * 1.93004 * 16 14 11 19 19 H 1.48501 * 109.47275 * 85.07880 * 18 16 14 20 20 H 1.48506 * 109.46600 * 205.07609 * 18 16 14 21 21 H 1.48497 * 109.47363 * 325.07714 * 18 16 14 22 22 N 1.32021 * 106.69106 * 359.53793 * 6 5 4 23 23 H 1.09000 * 109.46705 * 59.99750 * 1 2 3 24 24 H 1.08997 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46615 * 300.00128 * 1 2 3 26 26 H 1.09003 * 109.46730 * 240.00150 * 2 1 3 27 27 H 1.08994 * 109.47084 * 120.00458 * 2 1 3 28 28 H 0.97001 * 119.99942 * 179.68608 * 7 6 5 29 29 H 0.97000 * 119.99366 * 359.97438 * 10 8 7 30 30 H 1.09004 * 109.46825 * 183.99545 * 13 11 10 31 31 H 1.08999 * 109.46734 * 303.98984 * 13 11 10 32 32 H 1.08997 * 109.47578 * 63.99024 * 13 11 10 33 33 H 0.96992 * 119.99243 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.2889 2.1448 -1.0488 5 8 2.6728 3.2471 -0.7195 6 6 2.7092 3.3333 0.6174 7 7 3.0967 4.4283 1.3618 8 6 3.4962 5.5569 0.7429 9 8 3.5148 5.6101 -0.4715 10 7 3.8742 6.6268 1.4701 11 6 4.3091 7.8533 0.7972 12 1 3.7328 7.9894 -0.1180 13 6 5.7959 7.7462 0.4526 14 6 4.0885 9.0321 1.7097 15 1 4.2067 8.9183 2.7771 16 6 3.7302 10.2547 1.1823 17 7 3.5748 11.2926 1.9749 18 14 3.4657 10.4366 -0.6579 19 1 2.0750 10.0435 -0.9994 20 1 3.6918 11.8501 -1.0531 21 1 4.4200 9.5608 -1.3842 22 7 2.2970 2.1691 1.0838 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.0815 4.3860 2.3308 29 1 3.8583 6.5846 2.4390 30 1 6.1362 8.6854 0.0163 31 1 6.3649 7.5394 1.3590 32 1 5.9458 6.9378 -0.2629 33 1 3.3224 12.1525 1.6038 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344484188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:52 Heat of formation + Delta-G solvation = 38.332144 kcal Electronic energy + Delta-G solvation = -18478.678734 eV Core-core repulsion = 15350.208625 eV Total energy + Delta-G solvation = -3128.470109 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.34873 -40.05763 -36.36511 -35.90389 -34.86287 -33.01939 -32.46529 -30.84448 -29.52296 -25.42943 -25.18462 -23.90684 -22.85284 -20.83212 -20.06987 -18.72100 -18.36214 -18.02427 -16.77078 -16.36196 -15.37145 -15.02120 -14.73290 -14.46280 -14.31272 -13.49268 -13.14875 -12.66759 -12.56547 -12.38807 -12.14033 -11.94744 -11.59453 -11.44953 -11.24463 -10.95407 -10.94353 -10.85552 -10.65875 -10.14347 -9.90203 -9.31928 -9.03938 -8.83852 -8.34608 -6.33680 -4.39120 1.29399 1.83318 2.22924 3.17458 3.24221 3.29678 3.36440 3.40337 3.82701 4.23410 4.25478 4.65834 4.94791 4.96583 5.05285 5.09337 5.52868 5.62645 5.67512 5.88486 5.94396 6.15931 6.21236 6.39229 6.52996 6.57769 6.82428 7.07916 7.21990 7.35253 7.97595 8.29532 8.43114 8.63560 8.71523 9.26534 10.77414 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.044145 B = 0.004400 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.120280 B = 6362.303405 C = 6459.458408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.029 4.029 3 C 0.188 3.812 4 N -0.394 5.394 5 O 0.087 5.913 6 C 0.438 3.562 7 N -0.619 5.619 8 C 0.687 3.313 9 O -0.558 6.558 10 N -0.698 5.698 11 C 0.246 3.754 12 H 0.053 0.947 13 C -0.151 4.151 14 C -0.534 4.534 15 H 0.081 0.919 16 C 0.083 3.917 17 N -0.884 5.884 18 Si 0.873 3.127 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.258 1.258 22 N -0.520 5.520 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.433 0.567 29 H 0.396 0.604 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 -17.672 -0.088 17.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.068 4.068 3 C -0.086 4.086 4 N -0.110 5.110 5 O 0.037 5.963 6 C 0.129 3.871 7 N -0.282 5.282 8 C 0.386 3.614 9 O -0.432 6.432 10 N -0.350 5.350 11 C 0.144 3.856 12 H 0.071 0.929 13 C -0.210 4.210 14 C -0.572 4.572 15 H 0.099 0.901 16 C -0.122 4.122 17 N -0.520 5.520 18 Si 0.700 3.300 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.183 1.183 22 N -0.266 5.266 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.274 0.726 29 H 0.230 0.770 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.814 -17.768 -1.725 18.072 hybrid contribution -0.102 0.503 0.235 0.565 sum -2.916 -17.264 -1.490 17.572 Atomic orbital electron populations 1.21737 0.93410 1.02589 1.02833 1.19894 0.96698 0.85674 1.04520 1.25481 0.99657 0.99975 0.83462 1.74650 1.20562 0.92746 1.23002 1.85649 1.62598 1.26654 1.21428 1.23851 0.92760 0.88433 0.82083 1.41862 1.67358 1.08885 1.10138 1.16298 0.79090 0.79750 0.86235 1.91022 1.59390 1.81628 1.11185 1.46103 1.67063 1.12071 1.09808 1.19183 0.91761 0.80338 0.94269 0.92876 1.22271 0.98621 1.00302 0.99800 1.20962 1.49008 0.92075 0.95112 0.90069 1.24930 0.93436 0.95586 0.98255 1.69866 1.45459 1.01028 1.35605 0.86905 0.80010 0.77645 0.85481 1.19703 1.21008 1.18253 1.72190 1.25488 1.00638 1.28238 0.92270 0.91199 0.91932 0.89123 0.88679 0.72602 0.76970 0.92243 0.93371 0.94988 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.90 37.16 0.37 -0.83 16 2 C -0.03 -0.27 6.56 -27.88 -0.18 -0.45 16 3 C 0.19 2.63 7.46 -156.47 -1.17 1.46 16 4 N -0.39 -6.53 12.15 31.12 0.38 -6.15 16 5 O 0.09 1.59 9.69 -4.46 -0.04 1.55 16 6 C 0.44 7.00 8.99 -87.10 -0.78 6.22 16 7 N -0.62 -8.87 5.37 -17.65 -0.09 -8.97 16 8 C 0.69 12.56 8.49 -86.92 -0.74 11.82 16 9 O -0.56 -12.48 14.81 -16.30 -0.24 -12.72 16 10 N -0.70 -12.73 5.07 -59.82 -0.30 -13.04 16 11 C 0.25 5.49 2.16 -69.09 -0.15 5.34 16 12 H 0.05 1.30 4.90 -51.93 -0.25 1.05 16 13 C -0.15 -3.11 9.44 37.16 0.35 -2.76 16 14 C -0.53 -13.51 9.05 -34.44 -0.31 -13.82 16 15 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 16 C 0.08 2.23 5.47 -17.81 -0.10 2.13 16 17 N -0.88 -25.05 13.96 55.43 0.77 -24.27 16 18 Si 0.87 20.73 26.72 -169.99 -4.54 16.19 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.26 -6.00 6.86 56.52 0.39 -5.61 16 22 N -0.52 -7.62 11.59 -12.97 -0.15 -7.77 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.43 4.48 8.83 -40.82 -0.36 4.12 16 29 H 0.40 5.99 8.61 -40.82 -0.35 5.64 16 30 H 0.06 1.24 7.90 -51.93 -0.41 0.83 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 291.55 15.07 4.39 4.39 Total: -1.00 -31.43 291.55 -6.45 -37.88 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -3.91 Total: 3.79 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -2.71 Total: 9.11 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.60 Total: -60.19 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.28 Total: -11.18 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.54 Total: 16.19 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.43 -6.45 -37.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344484188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.214 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds