Wall clock time and date at job start Sun Mar 29 2020 23:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47493 * 2 1 4 4 N 1.29998 * 126.21814 * 269.97776 * 3 2 1 5 5 O 1.21279 * 110.46133 * 179.72248 * 4 3 2 6 6 C 1.34014 * 109.75247 * 0.46975 * 5 4 3 7 7 N 1.37962 * 126.65260 * 179.79916 * 6 5 4 8 8 C 1.34772 * 120.00416 * 359.68915 * 7 6 5 9 9 O 1.21566 * 119.99806 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00426 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00223 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46593 * 35.00173 * 11 10 8 13 13 C 1.52997 * 109.47092 * 275.00367 * 11 10 8 14 14 C 1.50693 * 109.47127 * 154.99809 * 11 10 8 15 15 H 1.08000 * 120.00093 * 34.06444 * 14 11 10 16 16 C 1.37885 * 120.00066 * 214.33522 * 14 11 10 17 17 N 1.31519 * 119.99598 * 181.93179 * 16 14 11 18 18 Si 1.86795 * 119.99707 * 1.93004 * 16 14 11 19 19 H 1.48501 * 109.47275 * 85.07880 * 18 16 14 20 20 H 1.48506 * 109.46600 * 205.07609 * 18 16 14 21 21 H 1.48497 * 109.47363 * 325.07714 * 18 16 14 22 22 N 1.32021 * 106.69106 * 359.53793 * 6 5 4 23 23 H 1.09000 * 109.46705 * 59.99750 * 1 2 3 24 24 H 1.08997 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46615 * 300.00128 * 1 2 3 26 26 H 1.09003 * 109.46730 * 240.00150 * 2 1 3 27 27 H 1.08994 * 109.47084 * 120.00458 * 2 1 3 28 28 H 0.97001 * 119.99942 * 179.68608 * 7 6 5 29 29 H 0.97000 * 119.99366 * 359.97438 * 10 8 7 30 30 H 1.09004 * 109.46825 * 183.99545 * 13 11 10 31 31 H 1.08999 * 109.46734 * 303.98984 * 13 11 10 32 32 H 1.08997 * 109.47578 * 63.99024 * 13 11 10 33 33 H 0.96992 * 119.99243 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.2889 2.1448 -1.0488 5 8 2.6728 3.2471 -0.7195 6 6 2.7092 3.3333 0.6174 7 7 3.0967 4.4283 1.3618 8 6 3.4962 5.5569 0.7429 9 8 3.5148 5.6101 -0.4715 10 7 3.8742 6.6268 1.4701 11 6 4.3091 7.8533 0.7972 12 1 3.7328 7.9894 -0.1180 13 6 5.7959 7.7462 0.4526 14 6 4.0885 9.0321 1.7097 15 1 4.2067 8.9183 2.7771 16 6 3.7302 10.2547 1.1823 17 7 3.5748 11.2926 1.9749 18 14 3.4657 10.4366 -0.6579 19 1 2.0750 10.0435 -0.9994 20 1 3.6918 11.8501 -1.0531 21 1 4.4200 9.5608 -1.3842 22 7 2.2970 2.1691 1.0838 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.0815 4.3860 2.3308 29 1 3.8583 6.5846 2.4390 30 1 6.1362 8.6854 0.0163 31 1 6.3649 7.5394 1.3590 32 1 5.9458 6.9378 -0.2629 33 1 3.3224 12.1525 1.6038 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344484188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:51 Heat of formation + Delta-G solvation = 14.627138 kcal Electronic energy + Delta-G solvation = -18479.706660 eV Core-core repulsion = 15350.208625 eV Total energy + Delta-G solvation = -3129.498035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.55041 -41.54965 -37.60647 -37.28555 -36.40411 -34.52840 -33.86578 -32.15249 -31.05464 -27.32597 -26.12418 -25.24418 -24.01930 -22.30627 -21.57735 -20.22755 -19.65903 -19.26050 -18.51172 -17.70991 -17.00851 -16.52887 -16.17040 -15.65515 -15.21879 -15.03893 -14.55018 -14.36312 -13.98408 -13.62175 -13.54246 -13.13518 -13.05726 -12.81624 -12.62174 -12.43065 -12.33591 -11.98685 -11.92830 -11.89918 -11.67651 -11.23107 -10.87500 -10.39077 -9.89646 -8.39127 -6.46202 0.03493 0.55566 1.08254 1.32287 1.37981 1.47109 1.91234 1.94940 2.27830 2.72228 2.97762 3.13896 3.48912 4.20175 4.23903 4.28880 4.41079 4.60471 4.72963 4.77880 4.80502 4.95563 4.97462 5.03949 5.08031 5.26523 5.29588 5.44673 5.54753 5.58374 6.13915 6.59721 6.76444 7.15737 7.18021 7.28330 8.75162 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.044145 B = 0.004400 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.120280 B = 6362.303405 C = 6459.458408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.031 4.031 3 C 0.197 3.803 4 N -0.416 5.416 5 O 0.052 5.948 6 C 0.430 3.570 7 N -0.597 5.597 8 C 0.696 3.304 9 O -0.597 6.597 10 N -0.691 5.691 11 C 0.251 3.749 12 H 0.034 0.966 13 C -0.145 4.145 14 C -0.526 4.526 15 H 0.065 0.935 16 C 0.037 3.963 17 N -0.926 5.926 18 Si 0.921 3.079 19 H -0.277 1.277 20 H -0.279 1.279 21 H -0.251 1.251 22 N -0.513 5.513 23 H 0.045 0.955 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.453 0.547 29 H 0.413 0.587 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.783 -19.838 0.067 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.077 4.077 4 N -0.137 5.137 5 O 0.007 5.993 6 C 0.120 3.880 7 N -0.262 5.262 8 C 0.395 3.605 9 O -0.474 6.474 10 N -0.345 5.345 11 C 0.147 3.853 12 H 0.052 0.948 13 C -0.204 4.204 14 C -0.564 4.564 15 H 0.083 0.917 16 C -0.164 4.164 17 N -0.564 5.564 18 Si 0.746 3.254 19 H -0.202 1.202 20 H -0.204 1.204 21 H -0.175 1.175 22 N -0.258 5.258 23 H 0.064 0.936 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.124 0.876 27 H 0.135 0.865 28 H 0.298 0.702 29 H 0.250 0.750 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.923 -19.945 -1.510 20.214 hybrid contribution -0.095 1.016 0.266 1.054 sum -3.018 -18.929 -1.244 19.209 Atomic orbital electron populations 1.21730 0.92396 1.04230 1.01803 1.20236 0.97391 0.82967 1.06354 1.26420 0.97484 1.01241 0.82517 1.74678 1.22202 0.92749 1.24066 1.85618 1.63584 1.27666 1.22409 1.24082 0.93109 0.88985 0.81814 1.41372 1.66450 1.07557 1.10870 1.16139 0.78564 0.80274 0.85525 1.91007 1.60802 1.82531 1.13076 1.45582 1.67099 1.11214 1.10589 1.18918 0.92742 0.80692 0.92910 0.94847 1.22173 0.97295 1.00258 1.00712 1.21141 1.47487 0.92964 0.94799 0.91721 1.25547 0.93816 0.95640 1.01409 1.69956 1.47686 1.01629 1.37160 0.86145 0.79625 0.77853 0.81805 1.20228 1.20428 1.17498 1.72250 1.25119 1.00083 1.28372 0.93570 0.88250 0.92671 0.87572 0.86533 0.70224 0.74999 0.92808 0.91710 0.94435 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.90 71.98 0.71 -1.24 16 2 C -0.03 -0.48 6.56 29.85 0.20 -0.29 16 3 C 0.20 5.16 7.46 138.50 1.03 6.19 16 4 N -0.42 -13.49 12.15 -59.00 -0.72 -14.20 16 5 O 0.05 1.89 9.69 92.10 0.89 2.79 16 6 C 0.43 13.22 8.99 179.12 1.61 14.83 16 7 N -0.60 -16.18 5.37 -438.69 -2.35 -18.54 16 8 C 0.70 24.61 8.49 179.06 1.52 26.13 16 9 O -0.60 -26.44 14.81 16.74 0.25 -26.19 16 10 N -0.69 -24.25 5.07 -461.45 -2.34 -26.59 16 11 C 0.25 10.93 2.16 44.24 0.10 11.02 16 12 H 0.03 1.62 4.90 -2.38 -0.01 1.61 16 13 C -0.15 -5.76 9.44 71.98 0.68 -5.08 16 14 C -0.53 -26.44 9.05 25.60 0.23 -26.21 16 15 H 0.06 3.42 8.06 -2.91 -0.02 3.39 16 16 C 0.04 1.99 5.47 84.66 0.46 2.45 16 17 N -0.93 -53.00 13.96 21.45 0.30 -52.70 16 18 Si 0.92 42.68 26.72 68.60 1.83 44.51 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.25 -11.24 6.86 99.48 0.68 -10.56 16 22 N -0.51 -14.05 11.59 -311.87 -3.61 -17.67 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.45 8.33 8.83 -92.71 -0.82 7.51 16 29 H 0.41 11.74 8.61 -92.71 -0.80 10.94 16 30 H 0.05 2.17 7.90 -2.39 -0.02 2.15 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -67.49 291.55 0.31 -67.19 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -0.48 Total: 13.59 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 6.54 Total: 27.81 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -8.73 Total: -129.70 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: 1.14 Total: -23.40 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.83 Total: 44.51 kcal Total: -67.49 0.31 -67.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344484188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.814 kcal (2) G-P(sol) polarization free energy of solvation -67.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds