Wall clock time and date at job start Mon Mar 30 2020 00:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47284 * 2 1 4 4 C 1.50696 * 109.47381 * 120.00430 * 2 1 3 5 5 H 1.08001 * 120.00204 * 116.66062 * 4 2 1 6 6 C 1.37878 * 120.00026 * 296.65733 * 4 2 1 7 7 N 1.31516 * 119.99766 * 352.45037 * 6 4 2 8 8 Si 1.86800 * 119.99913 * 172.71825 * 6 4 2 9 9 H 1.48506 * 109.46865 * 264.79148 * 8 6 4 10 10 H 1.48494 * 109.47308 * 24.78976 * 8 6 4 11 11 H 1.48502 * 109.47204 * 144.79640 * 8 6 4 12 12 C 1.50705 * 109.47195 * 240.00596 * 2 1 3 13 13 O 1.21283 * 120.00044 * 240.00003 * 12 2 1 14 14 N 1.34779 * 120.00080 * 59.99556 * 12 2 1 15 15 C 1.46496 * 120.00201 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47105 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.46934 * 180.02562 * 16 15 14 18 18 N 1.30066 * 126.21537 * 90.02199 * 17 16 15 19 19 N 1.28653 * 109.54565 * 180.02562 * 18 17 16 20 20 C 1.31071 * 109.31691 * 359.97438 * 19 18 17 21 21 N 1.38264 * 126.37196 * 180.02562 * 20 19 18 22 22 O 1.34582 * 107.26059 * 359.73999 * 20 19 18 23 23 H 1.08997 * 109.47353 * 177.35988 * 1 2 3 24 24 H 1.09008 * 109.47434 * 297.35707 * 1 2 3 25 25 H 1.09005 * 109.47634 * 57.35723 * 1 2 3 26 26 H 0.97000 * 119.99451 * 180.27574 * 7 6 4 27 27 H 0.97002 * 119.99834 * 0.02562 * 14 12 2 28 28 H 1.09002 * 109.46752 * 300.00322 * 15 14 12 29 29 H 1.08997 * 109.47117 * 59.99408 * 15 14 12 30 30 H 1.08995 * 109.47051 * 299.99235 * 16 15 14 31 31 H 1.09002 * 109.47182 * 59.99906 * 16 15 14 32 32 H 0.96998 * 119.99213 * 359.97438 * 21 20 19 33 33 H 0.96995 * 119.99487 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6080 -1.6190 1.1321 6 6 1.7571 -0.2007 2.4815 7 7 1.1871 0.9786 2.6002 8 14 2.2005 -1.1817 4.0080 9 1 1.0175 -1.9584 4.4583 10 1 3.3130 -2.1131 3.6920 11 1 2.6233 -0.2536 5.0875 12 6 2.0323 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1194 14 7 1.7066 -0.2498 -2.4547 15 6 2.1945 -0.9405 -3.6509 16 6 1.6850 -0.2188 -4.9000 17 6 2.1864 -0.9298 -6.1306 18 7 1.5844 -1.8970 -6.7581 19 7 2.2963 -2.2662 -7.7641 20 6 3.3865 -1.5402 -7.8136 21 7 4.3964 -1.6403 -8.7526 22 8 3.3370 -0.6748 -6.7841 23 1 -0.3634 -1.0265 -0.0473 24 1 -0.3634 0.4723 0.9128 25 1 -0.3634 0.5543 -0.8654 26 1 0.9971 1.3390 3.4805 27 1 1.1492 0.5391 -2.5436 28 1 3.2845 -0.9409 -3.6510 29 1 1.8309 -1.9681 -3.6507 30 1 0.5951 -0.2181 -4.9001 31 1 2.0491 0.8087 -4.8999 32 1 4.3349 -2.2985 -9.4625 33 1 5.1662 -1.0525 -8.7013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466938009.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:16 Heat of formation + Delta-G solvation = -33.904423 kcal Electronic energy + Delta-G solvation = -17976.937375 eV Core-core repulsion = 14845.334853 eV Total energy + Delta-G solvation = -3131.602521 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.09290 -40.56050 -37.15745 -36.92003 -35.98896 -35.69976 -33.33563 -32.14481 -29.38745 -27.13763 -25.77874 -24.27335 -23.95207 -22.90123 -21.14826 -19.15273 -18.58113 -18.28592 -18.04813 -17.74934 -17.21287 -16.73871 -16.31661 -16.22500 -15.20875 -15.07826 -14.59059 -14.31459 -13.57569 -13.50666 -13.40879 -12.92337 -12.86519 -12.80174 -12.63239 -12.55749 -12.42125 -12.18177 -11.99336 -11.92137 -11.03013 -10.54729 -10.34433 -10.00478 -9.47005 -8.16609 -6.22413 0.30735 0.79654 1.41074 1.42645 1.44468 1.54408 1.94734 2.22129 2.45764 2.70123 3.15838 3.39378 3.76054 3.85870 4.16088 4.27458 4.28938 4.38082 4.66979 4.79489 4.86509 4.93155 4.98637 5.06930 5.53416 5.54498 5.77377 5.81450 5.91047 6.21908 6.39958 6.77022 6.89514 7.42008 7.44686 7.56556 8.92138 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.053447 B = 0.003516 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.753463 B = 7962.618868 C = 8181.945287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.024 3.976 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.046 0.954 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.276 1.276 12 C 0.522 3.478 13 O -0.590 6.590 14 N -0.720 5.720 15 C 0.127 3.873 16 C -0.014 4.014 17 C 0.149 3.851 18 N -0.286 5.286 19 N -0.386 5.386 20 C 0.424 3.576 21 N -0.767 5.767 22 O -0.249 6.249 23 H 0.026 0.974 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.265 0.735 27 H 0.417 0.583 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.445 0.555 33 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.039 2.354 -21.513 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.003 3.997 3 H 0.067 0.933 4 C -0.570 4.570 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.776 3.224 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.201 1.201 12 C 0.311 3.689 13 O -0.469 6.469 14 N -0.375 5.375 15 C 0.002 3.998 16 C -0.052 4.052 17 C -0.068 4.068 18 N -0.130 5.130 19 N -0.244 5.244 20 C 0.120 3.880 21 N -0.334 5.334 22 O -0.129 6.129 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.255 0.745 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.284 0.716 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 2.536 0.905 -21.579 21.746 hybrid contribution 1.357 0.527 0.899 1.711 sum 3.894 1.432 -20.680 21.092 Atomic orbital electron populations 1.21527 0.94879 0.99436 1.01668 1.18811 0.95322 0.96293 0.89256 0.93333 1.21306 1.34323 1.10005 0.91355 0.93552 1.25540 0.95195 0.95652 1.01282 1.69997 1.43754 1.16759 1.24442 0.85668 0.78472 0.78809 0.79463 1.19825 1.20570 1.20099 1.21591 0.78140 0.83583 0.85600 1.90526 1.40028 1.28828 1.87546 1.45812 1.54695 1.32781 1.04189 1.21098 0.98881 0.96272 0.83539 1.20283 1.03698 0.99334 0.81931 1.27383 0.82043 0.98206 0.99166 1.74047 1.25351 1.10662 1.02917 1.74777 1.04081 1.27174 1.18343 1.23699 0.92401 0.86014 0.85885 1.40909 1.19539 1.44839 1.28065 1.84758 1.40946 1.51696 1.35539 0.95454 0.92504 0.91852 0.92597 0.74534 0.92712 0.92908 0.84347 0.84869 0.71643 0.73192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 8.91 71.98 0.64 -4.41 16 2 C 0.02 1.19 2.52 -12.29 -0.03 1.16 16 3 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 4 C -0.53 -30.69 8.32 25.60 0.21 -30.48 16 5 H 0.05 2.89 6.77 -2.91 -0.02 2.87 16 6 C 0.02 1.27 5.20 84.65 0.44 1.71 16 7 N -0.91 -50.88 11.92 21.45 0.26 -50.62 16 8 Si 0.95 44.93 29.54 68.60 2.03 46.96 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.52 23.27 7.15 87.66 0.63 23.89 16 13 O -0.59 -31.54 15.46 -3.04 -0.05 -31.59 16 14 N -0.72 -22.16 5.46 -463.06 -2.53 -24.69 16 15 C 0.13 3.44 5.66 86.38 0.49 3.93 16 16 C -0.01 -0.25 5.96 29.85 0.18 -0.07 16 17 C 0.15 3.48 7.73 88.37 0.68 4.16 16 18 N -0.29 -8.17 12.20 -165.26 -2.02 -10.18 16 19 N -0.39 -10.42 12.26 -173.50 -2.13 -12.55 16 20 C 0.42 8.59 9.72 179.04 1.74 10.33 16 21 N -0.77 -6.71 9.06 -169.64 -1.54 -8.25 16 22 O -0.25 -5.43 10.90 -9.69 -0.11 -5.53 16 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 2.73 6.59 -2.38 -0.02 2.72 16 25 H 0.06 2.09 7.64 -2.38 -0.02 2.08 16 26 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.42 9.64 7.94 -92.71 -0.74 8.90 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.45 2.03 8.95 -92.71 -0.83 1.20 16 33 H 0.43 1.32 8.95 -92.71 -0.83 0.49 16 Total: -1.00 -78.48 293.30 -2.31 -80.80 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -1.22 Total: 5.42 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 4.98 Total: 10.23 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -7.95 Total: -106.29 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -0.15 Total: -37.12 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -78.48 -2.31 -80.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466938009.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.894 kcal (2) G-P(sol) polarization free energy of solvation -78.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds