Wall clock time and date at job start Sun Mar 29 2020 23:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30277 * 126.28289 * 2 1 4 4 N 1.28665 * 109.38457 * 179.97438 * 3 2 1 5 5 C 1.30276 * 109.37968 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.28327 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46796 * 90.02793 * 6 5 4 8 8 C 1.46902 * 111.00283 * 66.04964 * 7 6 5 9 9 C 1.46906 * 110.99888 * 189.99926 * 7 6 5 10 10 C 1.50701 * 109.46965 * 170.00033 * 9 7 6 11 11 O 1.21289 * 120.00042 * 0.02562 * 10 9 7 12 12 N 1.34780 * 119.99669 * 180.02562 * 10 9 7 13 13 C 1.37097 * 120.00007 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99870 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00222 * 179.97438 * 13 12 10 16 16 N 1.31405 * 119.99914 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99972 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47398 * 60.00408 * 17 15 13 19 19 H 1.48506 * 109.47178 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47310 * 300.00416 * 17 15 13 21 21 O 1.34362 * 126.28570 * 180.27900 * 2 1 3 22 22 H 1.09004 * 109.46794 * 89.97760 * 1 2 3 23 23 H 1.09000 * 109.47177 * 209.97739 * 1 2 3 24 24 H 1.08991 * 109.47200 * 329.98127 * 1 2 3 25 25 H 1.08999 * 109.47012 * 330.03223 * 6 5 4 26 26 H 1.08996 * 109.47316 * 210.02495 * 6 5 4 27 27 H 1.09004 * 109.47457 * 183.95363 * 8 7 6 28 28 H 1.09001 * 109.46615 * 303.95014 * 8 7 6 29 29 H 1.08990 * 109.47358 * 63.94680 * 8 7 6 30 30 H 1.08993 * 109.47164 * 289.99976 * 9 7 6 31 31 H 1.08996 * 109.46920 * 50.00010 * 9 7 6 32 32 H 0.97001 * 120.00106 * 359.97438 * 12 10 9 33 33 H 0.96999 * 120.00026 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6762 0.0005 5 6 3.5654 -0.6254 0.0015 6 6 4.8177 -1.4638 0.0018 7 7 5.2245 -1.7357 1.3869 8 6 4.2368 -2.5826 2.0690 9 6 6.5609 -2.3438 1.4333 10 6 7.0459 -2.3825 2.8597 11 8 6.3468 -1.9468 3.7499 12 7 8.2564 -2.9013 3.1459 13 6 8.6979 -2.9360 4.4434 14 1 8.0754 -2.5481 5.2362 15 6 9.9457 -3.4713 4.7387 16 7 10.7029 -3.9438 3.7742 17 14 10.5469 -3.5193 6.5066 18 1 9.6076 -4.3253 7.3272 19 1 11.8981 -4.1335 6.5535 20 1 10.6131 -2.1367 7.0447 21 8 2.3022 -1.0831 -0.0053 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3633 0.8897 0.5141 25 1 5.6148 -0.9265 -0.5121 26 1 4.6246 -2.4056 -0.5117 27 1 4.5265 -2.7106 3.1121 28 1 3.2563 -2.1089 2.0198 29 1 4.1947 -3.5564 1.5815 30 1 6.5123 -3.3586 1.0385 31 1 7.2504 -1.7523 0.8311 32 1 8.8154 -3.2501 2.4340 33 1 11.5741 -4.3171 3.9802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559984829.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:01 Heat of formation + Delta-G solvation = 14.991425 kcal Electronic energy + Delta-G solvation = -18271.832828 eV Core-core repulsion = 15142.350590 eV Total energy + Delta-G solvation = -3129.482238 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.24352 -38.72378 -36.65961 -36.17010 -33.93221 -33.05074 -31.28235 -29.83623 -27.95836 -26.91990 -24.93420 -23.37674 -22.59418 -21.55823 -19.25719 -17.91547 -17.55330 -17.18962 -16.17709 -15.50110 -15.36983 -14.84267 -14.64539 -14.24268 -13.82839 -13.67299 -13.41672 -13.25425 -12.90037 -12.43333 -12.19673 -12.12181 -11.83641 -11.54484 -11.40370 -11.35478 -10.97214 -10.96939 -10.44784 -10.23208 -9.58514 -9.49177 -8.61557 -8.06584 -7.95898 -6.43560 -3.84441 1.07150 2.15947 2.36182 3.19438 3.25474 3.29828 3.67072 3.85959 3.98015 4.22246 4.27649 4.66032 4.95608 4.97563 5.03982 5.11829 5.22136 5.31420 5.38742 5.52072 5.52954 5.61874 5.63113 5.78333 5.86056 6.20827 6.41249 7.01413 7.07820 7.53675 8.03516 8.29875 8.59117 9.15992 9.51208 10.02861 10.74032 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.056499 B = 0.003736 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.464891 B = 7493.188206 C = 7642.603445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.153 3.847 3 N -0.290 5.290 4 N -0.270 5.270 5 C 0.182 3.818 6 C 0.148 3.852 7 N -0.514 5.514 8 C 0.019 3.981 9 C 0.048 3.952 10 C 0.443 3.557 11 O -0.576 6.576 12 N -0.561 5.561 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.024 3.976 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.273 1.273 21 O -0.228 6.228 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.123 0.877 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.053 0.947 29 H 0.023 0.977 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.393 0.607 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.742 1.065 -10.719 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.058 4.058 3 N -0.138 5.138 4 N -0.117 5.117 5 C -0.030 4.030 6 C 0.018 3.982 7 N -0.239 5.239 8 C -0.129 4.129 9 C -0.083 4.083 10 C 0.228 3.772 11 O -0.461 6.461 12 N -0.198 5.198 13 C -0.430 4.430 14 H 0.121 0.879 15 C -0.178 4.178 16 N -0.543 5.543 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.198 1.198 21 O -0.107 6.107 22 H 0.115 0.885 23 H 0.110 0.890 24 H 0.124 0.876 25 H 0.140 0.860 26 H 0.085 0.915 27 H 0.122 0.878 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.226 0.774 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.610 2.945 -9.857 17.869 hybrid contribution 0.325 -2.213 -0.021 2.237 sum -14.285 0.731 -9.878 17.383 Atomic orbital electron populations 1.20315 0.80387 1.05675 1.04975 1.27970 0.97794 0.79875 1.00157 1.74406 0.96257 1.25727 1.17373 1.74408 1.11738 1.09248 1.16307 1.27815 0.84679 0.91606 0.98855 1.20553 0.88258 0.96784 0.92587 1.61508 1.02618 1.48419 1.11379 1.22635 0.94346 0.93322 1.02553 1.21891 0.89644 0.98329 0.98403 1.19596 0.83694 0.84578 0.89290 1.90499 1.56327 1.51313 1.47916 1.41825 1.14958 1.53451 1.09561 1.19656 1.00830 1.37777 0.84698 0.87925 1.25256 0.96040 0.96767 0.99764 1.69597 1.11595 1.40676 1.32404 0.85914 0.77637 0.78750 0.81909 1.19916 1.20968 1.19835 1.84782 1.17782 1.38409 1.69740 0.88526 0.88976 0.87615 0.85958 0.91524 0.87753 0.92806 0.95867 0.92705 0.88648 0.77423 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.15 1.86 8.48 -12.94 -0.11 1.75 16 3 N -0.29 -4.51 12.22 32.55 0.40 -4.11 16 4 N -0.27 -4.58 12.22 32.55 0.40 -4.18 16 5 C 0.18 2.68 7.03 -12.94 -0.09 2.59 16 6 C 0.15 1.90 5.59 -4.98 -0.03 1.87 16 7 N -0.51 -8.58 4.49 -245.83 -1.10 -9.69 16 8 C 0.02 0.31 9.04 60.07 0.54 0.86 16 9 C 0.05 0.81 5.45 -4.97 -0.03 0.79 16 10 C 0.44 10.25 7.51 -10.98 -0.08 10.17 16 11 O -0.58 -15.45 13.88 5.55 0.08 -15.37 16 12 N -0.56 -13.94 5.29 -10.96 -0.06 -13.99 16 13 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 14 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 15 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 16 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 17 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 O -0.23 -3.04 10.19 5.38 0.05 -2.99 16 22 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.12 1.36 7.93 -51.93 -0.41 0.95 16 26 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 27 H 0.10 2.07 5.88 -51.93 -0.31 1.76 16 28 H 0.05 0.84 6.64 -51.93 -0.34 0.50 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 31 H 0.10 1.41 7.93 -51.93 -0.41 0.99 16 32 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 291.56 15.07 4.39 4.39 Total: -1.00 -34.02 291.56 -3.64 -37.66 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.84 Total: 5.71 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 0.34 Total: 10.16 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.36 Total: -55.47 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.13 Total: -18.36 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.02 -3.64 -37.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559984829.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.650 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds