Wall clock time and date at job start Sun Mar 29 2020 23:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30277 * 126.28289 * 2 1 4 4 N 1.28665 * 109.38457 * 179.97438 * 3 2 1 5 5 C 1.30276 * 109.37968 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.28327 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46796 * 90.02793 * 6 5 4 8 8 C 1.46902 * 111.00283 * 66.04964 * 7 6 5 9 9 C 1.46906 * 110.99888 * 189.99926 * 7 6 5 10 10 C 1.50701 * 109.46965 * 170.00033 * 9 7 6 11 11 O 1.21289 * 120.00042 * 0.02562 * 10 9 7 12 12 N 1.34780 * 119.99669 * 180.02562 * 10 9 7 13 13 C 1.37097 * 120.00007 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99870 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00222 * 179.97438 * 13 12 10 16 16 N 1.31405 * 119.99914 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99972 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47398 * 60.00408 * 17 15 13 19 19 H 1.48506 * 109.47178 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47310 * 300.00416 * 17 15 13 21 21 O 1.34362 * 126.28570 * 180.27900 * 2 1 3 22 22 H 1.09004 * 109.46794 * 89.97760 * 1 2 3 23 23 H 1.09000 * 109.47177 * 209.97739 * 1 2 3 24 24 H 1.08991 * 109.47200 * 329.98127 * 1 2 3 25 25 H 1.08999 * 109.47012 * 330.03223 * 6 5 4 26 26 H 1.08996 * 109.47316 * 210.02495 * 6 5 4 27 27 H 1.09004 * 109.47457 * 183.95363 * 8 7 6 28 28 H 1.09001 * 109.46615 * 303.95014 * 8 7 6 29 29 H 1.08990 * 109.47358 * 63.94680 * 8 7 6 30 30 H 1.08993 * 109.47164 * 289.99976 * 9 7 6 31 31 H 1.08996 * 109.46920 * 50.00010 * 9 7 6 32 32 H 0.97001 * 120.00106 * 359.97438 * 12 10 9 33 33 H 0.96999 * 120.00026 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6762 0.0005 5 6 3.5654 -0.6254 0.0015 6 6 4.8177 -1.4638 0.0018 7 7 5.2245 -1.7357 1.3869 8 6 4.2368 -2.5826 2.0690 9 6 6.5609 -2.3438 1.4333 10 6 7.0459 -2.3825 2.8597 11 8 6.3468 -1.9468 3.7499 12 7 8.2564 -2.9013 3.1459 13 6 8.6979 -2.9360 4.4434 14 1 8.0754 -2.5481 5.2362 15 6 9.9457 -3.4713 4.7387 16 7 10.7029 -3.9438 3.7742 17 14 10.5469 -3.5193 6.5066 18 1 9.6076 -4.3253 7.3272 19 1 11.8981 -4.1335 6.5535 20 1 10.6131 -2.1367 7.0447 21 8 2.3022 -1.0831 -0.0053 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3633 0.8897 0.5141 25 1 5.6148 -0.9265 -0.5121 26 1 4.6246 -2.4056 -0.5117 27 1 4.5265 -2.7106 3.1121 28 1 3.2563 -2.1089 2.0198 29 1 4.1947 -3.5564 1.5815 30 1 6.5123 -3.3586 1.0385 31 1 7.2504 -1.7523 0.8311 32 1 8.8154 -3.2501 2.4340 33 1 11.5741 -4.3171 3.9802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559984829.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:01 Heat of formation + Delta-G solvation = -16.076354 kcal Electronic energy + Delta-G solvation = -18273.180028 eV Core-core repulsion = 15142.350590 eV Total energy + Delta-G solvation = -3130.829438 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.27287 -40.40253 -38.09153 -37.22856 -35.89101 -33.97870 -33.27090 -30.79961 -29.36592 -27.96085 -26.73682 -24.69775 -23.55220 -22.71667 -21.02323 -19.86873 -18.62531 -18.31758 -17.70026 -16.78738 -16.65625 -16.41470 -15.78125 -15.74054 -15.47691 -15.16313 -14.49872 -13.99780 -13.82070 -13.55862 -13.48518 -13.46096 -13.24625 -12.99084 -12.91852 -12.72184 -12.56861 -12.41671 -12.11845 -11.99804 -11.45628 -10.61382 -10.34370 -9.99181 -9.38120 -8.45436 -5.93625 0.08072 1.21094 1.31629 1.40254 1.42596 1.52943 2.06996 2.29162 2.66670 2.91893 3.21851 3.34308 3.44411 3.84036 4.05660 4.22373 4.26696 4.36287 4.41062 4.49892 4.55114 4.57095 4.58217 4.61130 4.72948 5.04221 5.06968 5.42137 5.71718 5.87820 6.05299 6.62497 7.14755 7.25217 7.58239 8.14728 8.71620 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.056499 B = 0.003736 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.464891 B = 7493.188206 C = 7642.603445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.168 3.832 3 N -0.334 5.334 4 N -0.309 5.309 5 C 0.177 3.823 6 C 0.151 3.849 7 N -0.543 5.543 8 C 0.028 3.972 9 C 0.062 3.938 10 C 0.440 3.560 11 O -0.619 6.619 12 N -0.571 5.571 13 C -0.334 4.334 14 H 0.077 0.923 15 C -0.010 4.010 16 N -0.919 5.919 17 Si 0.990 3.010 18 H -0.272 1.272 19 H -0.270 1.270 20 H -0.274 1.274 21 O -0.230 6.230 22 H 0.124 0.876 23 H 0.112 0.888 24 H 0.116 0.884 25 H 0.140 0.860 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.398 0.602 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.471 0.230 -11.985 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.043 4.043 3 N -0.180 5.180 4 N -0.155 5.155 5 C -0.036 4.036 6 C 0.023 3.977 7 N -0.268 5.268 8 C -0.120 4.120 9 C -0.068 4.068 10 C 0.227 3.773 11 O -0.505 6.505 12 N -0.209 5.209 13 C -0.463 4.463 14 H 0.095 0.905 15 C -0.210 4.210 16 N -0.560 5.560 17 Si 0.814 3.186 18 H -0.197 1.197 19 H -0.194 1.194 20 H -0.200 1.200 21 O -0.109 6.109 22 H 0.142 0.858 23 H 0.131 0.869 24 H 0.135 0.865 25 H 0.158 0.842 26 H 0.121 0.879 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.141 0.859 32 H 0.232 0.768 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.342 2.120 -11.156 19.087 hybrid contribution 0.411 -1.925 0.339 1.997 sum -14.931 0.195 -10.817 18.438 Atomic orbital electron populations 1.20725 0.76318 1.07192 1.07133 1.29128 0.99527 0.78841 0.96792 1.74330 0.96350 1.27326 1.20007 1.74315 1.12904 1.10668 1.17635 1.28101 0.85615 0.91290 0.98618 1.20714 0.88118 0.98339 0.90525 1.61325 1.02431 1.48909 1.14184 1.22433 0.94268 0.94768 1.00494 1.21763 0.90299 1.00915 0.93857 1.20755 0.82480 0.82311 0.91755 1.90481 1.57268 1.52520 1.50245 1.41877 1.15859 1.54323 1.08825 1.19598 1.01563 1.39516 0.85654 0.90511 1.25974 0.95627 0.95914 1.03520 1.69649 1.11861 1.40622 1.33831 0.85036 0.77592 0.78588 0.77414 1.19717 1.19439 1.19967 1.84803 1.17535 1.38699 1.69889 0.85799 0.86899 0.86534 0.84237 0.87945 0.91872 0.92592 0.93313 0.89436 0.85933 0.76780 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 71.24 0.75 0.21 16 2 C 0.17 3.83 8.48 88.34 0.75 4.58 16 3 N -0.33 -10.23 12.22 -165.50 -2.02 -12.26 16 4 N -0.31 -10.37 12.22 -165.50 -2.02 -12.40 16 5 C 0.18 4.94 7.03 88.34 0.62 5.56 16 6 C 0.15 3.49 5.59 85.56 0.48 3.97 16 7 N -0.54 -17.21 4.49 -931.66 -4.18 -21.40 16 8 C 0.03 0.90 9.04 127.69 1.15 2.05 16 9 C 0.06 1.96 5.45 85.56 0.47 2.43 16 10 C 0.44 20.42 7.51 87.66 0.66 21.08 16 11 O -0.62 -34.18 13.88 -3.06 -0.04 -34.22 16 12 N -0.57 -28.64 5.29 -306.98 -1.62 -30.26 16 13 C -0.33 -18.82 9.68 84.04 0.81 -18.00 16 14 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 15 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 16 N -0.92 -48.94 13.05 21.66 0.28 -48.66 16 17 Si 0.99 42.85 29.55 68.60 2.03 44.88 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 O -0.23 -5.70 10.19 -3.65 -0.04 -5.74 16 22 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 23 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.14 2.70 7.93 -2.39 -0.02 2.68 16 26 H 0.10 1.66 8.12 -2.39 -0.02 1.64 16 27 H 0.06 2.55 5.88 -2.38 -0.01 2.54 16 28 H 0.06 1.71 6.64 -2.39 -0.02 1.69 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 2.25 8.12 -2.39 -0.02 2.23 16 31 H 0.12 3.25 7.93 -2.39 -0.02 3.23 16 32 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 33 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -76.50 291.56 -1.05 -77.56 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.41 Total: 20.70 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 6.16 Total: 21.78 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -9.57 Total: -124.97 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.08 Total: -39.96 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -76.50 -1.05 -77.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559984829.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.481 kcal (2) G-P(sol) polarization free energy of solvation -76.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds