Wall clock time and date at job start Mon Mar 30 2020 00:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 N 1.46491 * 109.47316 * 65.00237 * 4 2 1 6 6 C 1.36938 * 120.00104 * 180.02562 * 5 4 2 7 7 H 1.07991 * 120.00149 * 359.97438 * 6 5 4 8 8 C 1.38821 * 119.99862 * 180.02562 * 6 5 4 9 9 N 1.31613 * 119.99587 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99895 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47278 * 90.00441 * 10 8 6 12 12 H 1.48506 * 109.46627 * 210.00225 * 10 8 6 13 13 H 1.48497 * 109.47449 * 329.99946 * 10 8 6 14 14 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 15 15 N 1.46500 * 109.47515 * 294.99964 * 14 2 1 16 16 C 1.34778 * 120.00010 * 180.02562 * 15 14 2 17 17 O 1.21503 * 119.99739 * 0.02562 * 16 15 14 18 18 C 1.48277 * 119.99773 * 179.97438 * 16 15 14 19 19 C 1.47488 * 128.70807 * 179.97438 * 18 16 15 20 20 N 1.30645 * 102.71466 * 180.02562 * 19 18 16 21 21 O 1.20834 * 109.62053 * 0.02562 * 20 19 18 22 22 N 1.20900 * 115.90622 * 359.68630 * 21 20 19 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 26 26 H 1.09001 * 109.46992 * 185.00551 * 4 2 1 27 27 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 28 28 H 0.97008 * 120.00144 * 359.97438 * 5 4 2 29 29 H 0.97004 * 119.99784 * 180.02562 * 9 8 6 30 30 H 1.09002 * 109.47016 * 55.00506 * 14 2 1 31 31 H 1.09000 * 109.46709 * 175.00070 * 14 2 1 32 32 H 0.96996 * 120.00032 * 0.02562 * 15 14 2 33 33 H 1.08002 * 128.64567 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6526 0.0353 -2.4423 6 6 2.0012 -0.4209 -3.6855 7 1 2.5622 -1.3381 -3.7864 8 6 1.6345 0.2964 -4.8161 9 7 1.9701 -0.1418 -6.0109 10 14 0.6648 1.8834 -4.6415 11 1 1.6044 3.0273 -4.5246 12 1 -0.1970 2.0708 -5.8363 13 1 -0.1840 1.8137 -3.4250 14 6 2.0399 -0.7212 1.2493 15 7 1.6524 0.0354 2.4424 16 6 1.9963 -0.4130 3.6660 17 8 2.6282 -1.4446 3.7794 18 6 1.6045 0.3531 4.8735 19 6 1.8750 0.0439 6.2900 20 7 1.3084 1.0413 6.9153 21 8 0.8066 1.7914 6.1119 22 7 0.9321 1.4817 4.9500 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 3.1264 -0.7995 -1.2055 27 1 1.6055 -1.7198 -1.2951 28 1 1.1484 0.8591 -2.3518 29 1 1.7141 0.3595 -6.8009 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7994 1.2057 32 1 1.1482 0.8591 2.3518 33 1 2.4081 -0.7979 6.7067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568200182.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:00 Heat of formation + Delta-G solvation = 89.133598 kcal Electronic energy + Delta-G solvation = -17965.093731 eV Core-core repulsion = 14838.826539 eV Total energy + Delta-G solvation = -3126.267192 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.33785 -40.08130 -37.17555 -35.26431 -34.89034 -34.60654 -32.59412 -30.62253 -27.52884 -26.35556 -25.14158 -24.33694 -22.16135 -21.12571 -20.33518 -19.45426 -18.93246 -18.05608 -17.38066 -16.38742 -15.81554 -15.39886 -14.77818 -14.55678 -14.25804 -13.89193 -13.30199 -13.20467 -12.80832 -12.55441 -12.35139 -12.28923 -11.77977 -11.52058 -11.21850 -11.11416 -10.92945 -10.82380 -10.72444 -10.51306 -10.15698 -9.62099 -9.43673 -8.94410 -7.28057 -5.80356 -3.16483 0.33303 0.90459 2.27624 2.57668 3.00467 3.08300 3.33101 3.35786 3.42105 3.55867 4.33697 4.43175 4.55207 4.72223 4.91672 4.96405 5.12731 5.49294 5.55000 5.64935 5.69879 5.74203 5.92031 6.07828 6.17442 6.38676 6.57432 6.66332 6.98018 7.60351 7.95466 7.97605 8.38430 9.16984 9.89027 10.08237 11.38039 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.044507 B = 0.003633 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.959895 B = 7704.989536 C = 8186.979087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 H 0.078 0.922 4 C 0.166 3.834 5 N -0.754 5.754 6 C -0.246 4.246 7 H 0.091 0.909 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.125 3.875 15 N -0.703 5.703 16 C 0.602 3.398 17 O -0.513 6.513 18 C -0.040 4.040 19 C 0.038 3.962 20 N -0.354 5.354 21 O 0.342 5.658 22 N -0.321 5.321 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.031 0.969 27 H 0.032 0.968 28 H 0.361 0.639 29 H 0.260 0.740 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.408 0.592 33 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.410 2.296 24.278 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.135 4.135 3 H 0.097 0.903 4 C 0.038 3.962 5 N -0.400 5.400 6 C -0.376 4.376 7 H 0.109 0.891 8 C -0.191 4.191 9 N -0.581 5.581 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.002 3.998 15 N -0.355 5.355 16 C 0.384 3.616 17 O -0.387 6.387 18 C -0.206 4.206 19 C -0.148 4.148 20 N -0.077 5.077 21 O 0.116 5.884 22 N -0.041 5.041 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.194 0.806 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.244 0.756 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.426 2.378 24.404 24.640 hybrid contribution -0.467 0.759 -0.296 0.939 sum -2.893 3.137 24.109 24.483 Atomic orbital electron populations 1.21844 0.94590 1.02414 1.01472 1.21634 0.96819 1.00709 0.94352 0.90343 1.20539 0.97273 0.94237 0.84169 1.42677 1.67696 1.27322 1.02324 1.19057 1.29548 1.07233 0.81714 0.89140 1.24680 1.00718 0.98645 0.95092 1.69700 1.51238 1.40229 0.96962 0.86547 0.80237 0.84806 0.76881 1.21058 1.21676 1.20380 1.21589 1.00881 0.95378 0.81916 1.45940 1.56254 1.27999 1.05284 1.16451 0.80170 0.83948 0.81040 1.90865 1.39283 1.22818 1.85699 1.26330 1.02459 0.94344 0.97428 1.27770 0.99711 0.99382 0.87917 1.75086 1.10844 1.03362 1.18445 1.85098 1.54283 1.40994 1.08039 1.75400 1.13924 1.13314 1.01468 0.92222 0.93640 0.91540 0.95110 0.95040 0.80596 0.93003 0.90330 0.90306 0.75615 0.75526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.94 37.16 0.33 -1.56 16 2 C -0.12 -1.55 2.46 -90.62 -0.22 -1.78 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 4 C 0.17 2.97 5.65 -4.05 -0.02 2.95 16 5 N -0.75 -17.25 5.13 -59.92 -0.31 -17.56 16 6 C -0.25 -6.86 10.47 -15.06 -0.16 -7.02 16 7 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 8 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 9 N -0.93 -29.16 13.97 55.49 0.78 -28.38 16 10 Si 0.88 21.72 27.74 -169.99 -4.71 17.00 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 14 C 0.13 1.45 5.06 -4.04 -0.02 1.43 16 15 N -0.70 -7.30 5.28 -61.11 -0.32 -7.62 16 16 C 0.60 6.71 7.85 -12.13 -0.10 6.61 16 17 O -0.51 -7.05 17.05 5.36 0.09 -6.95 16 18 C -0.04 -0.37 7.56 -80.07 -0.61 -0.98 16 19 C 0.04 0.29 12.63 -14.29 -0.18 0.11 16 20 N -0.35 -2.99 12.22 30.71 0.38 -2.61 16 21 O 0.34 2.98 11.65 27.27 0.32 3.30 16 22 N -0.32 -2.98 12.13 33.49 0.41 -2.57 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.48 7.18 -51.93 -0.37 0.10 16 25 H 0.07 1.00 7.18 -51.93 -0.37 0.63 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.36 8.00 4.71 -40.82 -0.19 7.81 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.41 3.71 7.51 -40.82 -0.31 3.41 16 33 H 0.23 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 291.88 15.07 4.40 4.40 Total: -1.00 -32.21 291.88 -3.84 -36.06 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -3.79 Total: 5.14 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -1.07 Total: -0.19 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.93 Total: -58.75 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: 0.41 Total: -3.66 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.21 -3.84 -36.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568200182.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.189 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds