Wall clock time and date at job start Mon Mar 30 2020 00:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 N 1.46491 * 109.47316 * 65.00237 * 4 2 1 6 6 C 1.36938 * 120.00104 * 180.02562 * 5 4 2 7 7 H 1.07991 * 120.00149 * 359.97438 * 6 5 4 8 8 C 1.38821 * 119.99862 * 180.02562 * 6 5 4 9 9 N 1.31613 * 119.99587 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99895 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47278 * 90.00441 * 10 8 6 12 12 H 1.48506 * 109.46627 * 210.00225 * 10 8 6 13 13 H 1.48497 * 109.47449 * 329.99946 * 10 8 6 14 14 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 15 15 N 1.46500 * 109.47515 * 294.99964 * 14 2 1 16 16 C 1.34778 * 120.00010 * 180.02562 * 15 14 2 17 17 O 1.21503 * 119.99739 * 0.02562 * 16 15 14 18 18 C 1.48277 * 119.99773 * 179.97438 * 16 15 14 19 19 C 1.47488 * 128.70807 * 179.97438 * 18 16 15 20 20 N 1.30645 * 102.71466 * 180.02562 * 19 18 16 21 21 O 1.20834 * 109.62053 * 0.02562 * 20 19 18 22 22 N 1.20900 * 115.90622 * 359.68630 * 21 20 19 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 26 26 H 1.09001 * 109.46992 * 185.00551 * 4 2 1 27 27 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 28 28 H 0.97008 * 120.00144 * 359.97438 * 5 4 2 29 29 H 0.97004 * 119.99784 * 180.02562 * 9 8 6 30 30 H 1.09002 * 109.47016 * 55.00506 * 14 2 1 31 31 H 1.09000 * 109.46709 * 175.00070 * 14 2 1 32 32 H 0.96996 * 120.00032 * 0.02562 * 15 14 2 33 33 H 1.08002 * 128.64567 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6526 0.0353 -2.4423 6 6 2.0012 -0.4209 -3.6855 7 1 2.5622 -1.3381 -3.7864 8 6 1.6345 0.2964 -4.8161 9 7 1.9701 -0.1418 -6.0109 10 14 0.6648 1.8834 -4.6415 11 1 1.6044 3.0273 -4.5246 12 1 -0.1970 2.0708 -5.8363 13 1 -0.1840 1.8137 -3.4250 14 6 2.0399 -0.7212 1.2493 15 7 1.6524 0.0354 2.4424 16 6 1.9963 -0.4130 3.6660 17 8 2.6282 -1.4446 3.7794 18 6 1.6045 0.3531 4.8735 19 6 1.8750 0.0439 6.2900 20 7 1.3084 1.0413 6.9153 21 8 0.8066 1.7914 6.1119 22 7 0.9321 1.4817 4.9500 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 3.1264 -0.7995 -1.2055 27 1 1.6055 -1.7198 -1.2951 28 1 1.1484 0.8591 -2.3518 29 1 1.7141 0.3595 -6.8009 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7994 1.2057 32 1 1.1482 0.8591 2.3518 33 1 2.4081 -0.7979 6.7067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568200182.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:00 Heat of formation + Delta-G solvation = 64.793782 kcal Electronic energy + Delta-G solvation = -17966.149185 eV Core-core repulsion = 14838.826539 eV Total energy + Delta-G solvation = -3127.322646 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.99416 -40.98994 -38.42128 -36.24063 -35.78922 -35.56075 -34.17599 -32.41965 -28.42665 -27.74096 -26.23857 -25.09926 -23.88892 -21.99894 -21.56936 -20.11386 -19.95090 -19.38721 -18.56733 -17.40614 -16.75796 -16.57785 -16.05424 -15.76140 -15.57106 -15.24701 -14.88081 -14.24160 -13.92864 -13.86561 -13.67322 -13.23032 -13.00799 -12.88764 -12.44701 -12.20393 -12.17753 -12.05562 -11.87770 -11.80907 -11.76966 -11.55861 -10.98346 -10.34228 -9.29888 -8.02864 -5.36723 -0.39345 0.29808 1.37674 1.42205 1.46396 1.49685 1.75108 2.31582 2.44580 2.48743 2.86560 3.28730 3.50475 3.66404 3.71683 3.90470 3.98547 4.09558 4.43469 4.48549 4.65829 4.70910 4.89879 4.98349 5.06310 5.12218 5.29149 5.41644 5.75958 6.14385 6.20999 6.76820 7.08113 7.31888 7.83552 8.02968 9.18816 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.044507 B = 0.003633 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.959895 B = 7704.989536 C = 8186.979087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 H 0.087 0.913 4 C 0.159 3.841 5 N -0.755 5.755 6 C -0.236 4.236 7 H 0.055 0.945 8 C -0.066 4.066 9 N -0.986 5.986 10 Si 0.957 3.043 11 H -0.278 1.278 12 H -0.297 1.297 13 H -0.247 1.247 14 C 0.134 3.866 15 N -0.696 5.696 16 C 0.607 3.393 17 O -0.541 6.541 18 C -0.052 4.052 19 C 0.053 3.947 20 N -0.362 5.362 21 O 0.343 5.657 22 N -0.322 5.322 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.029 0.971 27 H 0.028 0.972 28 H 0.368 0.632 29 H 0.258 0.742 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.416 0.584 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.327 3.571 26.680 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.105 0.895 4 C 0.033 3.967 5 N -0.402 5.402 6 C -0.367 4.367 7 H 0.073 0.927 8 C -0.257 4.257 9 N -0.636 5.636 10 Si 0.783 3.217 11 H -0.204 1.204 12 H -0.224 1.224 13 H -0.171 1.171 14 C 0.011 3.989 15 N -0.348 5.348 16 C 0.390 3.610 17 O -0.417 6.417 18 C -0.217 4.217 19 C -0.132 4.132 20 N -0.087 5.087 21 O 0.117 5.883 22 N -0.041 5.041 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.201 0.799 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.254 0.746 33 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -3.361 3.671 26.854 27.311 hybrid contribution -0.120 0.267 -0.988 1.030 sum -3.481 3.939 25.866 26.395 Atomic orbital electron populations 1.21827 0.93848 1.02535 1.01921 1.21420 0.97248 1.00596 0.92700 0.89469 1.20709 0.97230 0.94234 0.84559 1.42650 1.67635 1.27907 1.01965 1.19046 1.27966 1.05749 0.83979 0.92652 1.25557 1.02679 1.02913 0.94589 1.69894 1.53466 1.42279 0.97983 0.85388 0.78851 0.79734 0.77681 1.20369 1.22391 1.17107 1.21364 1.00683 0.95229 0.81620 1.45801 1.56091 1.28091 1.04783 1.16538 0.79504 0.83570 0.81431 1.90855 1.40614 1.24108 1.86151 1.26133 1.03429 0.94636 0.97542 1.28244 0.98605 0.99473 0.86915 1.75112 1.11420 1.03743 1.18446 1.85101 1.54303 1.41079 1.07834 1.75381 1.13677 1.13211 1.01848 0.92353 0.90784 0.93417 0.95343 0.95356 0.79854 0.93319 0.90321 0.90533 0.74637 0.72794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.94 71.98 0.64 -2.68 16 2 C -0.10 -2.46 2.46 -10.79 -0.03 -2.49 16 3 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 4 C 0.16 5.56 5.65 86.38 0.49 6.05 16 5 N -0.76 -33.80 5.13 -343.48 -1.76 -35.56 16 6 C -0.24 -13.36 10.47 84.04 0.88 -12.48 16 7 H 0.06 3.44 8.06 -2.92 -0.02 3.42 16 8 C -0.07 -3.87 5.50 84.87 0.47 -3.40 16 9 N -0.99 -63.15 13.97 21.65 0.30 -62.85 16 10 Si 0.96 44.46 27.74 68.60 1.90 46.36 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 13 H -0.25 -10.09 6.52 99.48 0.65 -9.44 16 14 C 0.13 2.84 5.06 86.38 0.44 3.28 16 15 N -0.70 -12.72 5.28 -465.55 -2.46 -15.18 16 16 C 0.61 12.25 7.85 86.91 0.68 12.93 16 17 O -0.54 -13.97 17.05 -3.72 -0.06 -14.04 16 18 C -0.05 -0.86 7.56 44.29 0.34 -0.53 16 19 C 0.05 0.67 12.63 87.31 1.10 1.77 16 20 N -0.36 -5.31 12.22 -61.44 -0.75 -6.06 16 21 O 0.34 5.28 11.65 140.86 1.64 6.92 16 22 N -0.32 -5.26 12.13 -52.08 -0.63 -5.89 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 24 H 0.07 1.29 7.18 -2.39 -0.02 1.27 16 25 H 0.05 1.30 7.18 -2.39 -0.02 1.28 16 26 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.37 15.44 4.71 -92.70 -0.44 15.00 16 29 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.42 6.30 7.51 -92.71 -0.70 5.61 16 33 H 0.26 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -69.98 291.88 3.15 -66.83 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.04 Total: 17.01 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 5.01 Total: 2.46 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -5.30 Total: -125.55 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 1.58 Total: -7.12 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.90 Total: 46.36 kcal Total: -69.98 3.15 -66.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568200182.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.625 kcal (2) G-P(sol) polarization free energy of solvation -69.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds