Wall clock time and date at job start Sun Mar 29 2020 23:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48506 * 109.47015 * 240.00109 * 3 2 1 5 5 H 1.48505 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47043 * 120.00043 * 3 2 1 7 7 C 1.37879 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47172 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46980 * 180.02562 * 10 9 7 12 12 C 1.35312 * 125.86803 * 124.99739 * 11 10 9 13 13 C 1.35348 * 106.17374 * 179.97438 * 12 11 10 14 14 C 1.50698 * 126.75033 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47333 * 125.00361 * 14 13 12 16 16 H 1.09004 * 109.46693 * 304.99888 * 15 14 13 17 17 N 1.46897 * 109.47373 * 64.99827 * 15 14 13 18 18 C 1.50702 * 109.47089 * 184.99958 * 15 14 13 19 19 O 1.20822 * 119.99854 * 259.72068 * 18 15 14 20 20 O 1.34234 * 119.99997 * 79.99903 * 18 15 14 21 21 N 1.33769 * 106.49737 * 0.26265 * 13 12 11 22 22 N 1.28631 * 108.88853 * 359.56441 * 21 13 12 23 23 H 0.97004 * 119.99379 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46675 * 60.00409 * 9 7 2 25 25 H 1.09000 * 109.46920 * 300.00643 * 9 7 2 26 26 H 1.08995 * 109.47318 * 60.00042 * 10 9 7 27 27 H 1.09000 * 109.47229 * 299.99849 * 10 9 7 28 28 H 1.08003 * 126.91070 * 359.94947 * 12 11 10 29 29 H 1.09005 * 109.47128 * 4.99940 * 14 13 12 30 30 H 1.09003 * 109.47056 * 245.00018 * 14 13 12 31 31 H 1.00902 * 111.00147 * 60.00024 * 17 15 14 32 32 H 1.00895 * 111.00002 * 183.95679 * 17 15 14 33 33 H 0.96695 * 116.99910 * 179.72143 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 1.6612 -5.9316 -0.8996 13 6 0.7977 -6.9047 -0.5262 14 6 0.5843 -8.2313 -1.2086 15 6 0.7790 -9.3624 -0.1969 16 1 1.7590 -9.2669 0.2707 17 7 -0.2651 -9.2830 0.8334 18 6 0.6870 -10.6901 -0.9039 19 8 -0.3356 -11.3317 -0.8537 20 8 1.7430 -11.1625 -1.5848 21 7 0.1674 -6.4551 0.5646 22 7 0.6175 -5.2853 0.8532 23 1 -0.4849 0.8401 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5570 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 2.3332 -5.9500 -1.7449 29 1 1.3032 -8.3421 -2.0204 30 1 -0.4278 -8.2741 -1.6112 31 1 -1.1836 -9.3690 0.4248 32 1 -0.1209 -9.9797 1.5488 33 1 1.6376 -12.0204 -2.0185 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067005.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:29 Heat of formation + Delta-G solvation = -5.796532 kcal Electronic energy + Delta-G solvation = -17954.894525 eV Core-core repulsion = 14824.510854 eV Total energy + Delta-G solvation = -3130.383672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.68099 -40.64754 -36.70260 -35.89274 -34.71796 -32.79877 -31.51362 -29.90270 -28.33810 -25.53919 -25.13405 -22.40841 -21.44865 -21.02080 -19.88415 -18.51295 -17.24801 -16.99894 -16.32516 -15.87499 -15.73764 -15.46117 -14.62439 -14.48235 -14.33365 -13.82509 -13.33834 -13.04499 -12.43534 -12.27311 -11.97469 -11.81379 -11.58665 -11.16200 -11.08691 -10.93134 -10.83110 -10.46068 -10.17085 -9.97938 -9.43172 -9.20531 -9.05513 -8.69279 -8.50987 -6.15440 -4.22322 1.81380 2.18579 2.72547 3.07083 3.08440 3.25042 3.30787 3.32334 4.22630 4.33687 4.57633 4.72373 4.88906 5.06941 5.13248 5.20693 5.37920 5.44687 5.62886 5.82977 5.90496 6.15354 6.24568 6.45299 6.58964 6.82801 7.12335 7.23752 7.42940 7.52866 7.55474 7.80128 8.12007 8.82914 9.16491 9.43108 10.95535 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.065155 B = 0.003400 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.638994 B = 8234.356792 C = 8440.055161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.015 3.985 10 C 0.112 3.888 11 N -0.273 5.273 12 C -0.057 4.057 13 C -0.035 4.035 14 C -0.012 4.012 15 C 0.113 3.887 16 H 0.117 0.883 17 N -0.790 5.790 18 C 0.444 3.556 19 O -0.522 6.522 20 O -0.516 6.516 21 N -0.245 5.245 22 N -0.080 5.080 23 H 0.265 0.735 24 H 0.023 0.977 25 H 0.038 0.962 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.181 0.819 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.353 0.647 32 H 0.343 0.657 33 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.190 -18.862 -4.298 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.078 0.922 9 C -0.022 4.022 10 C -0.007 4.007 11 N -0.065 5.065 12 C -0.210 4.210 13 C -0.175 4.175 14 C -0.052 4.052 15 C -0.002 4.002 16 H 0.134 0.866 17 N -0.320 5.320 18 C 0.283 3.717 19 O -0.410 6.410 20 O -0.326 6.326 21 N -0.111 5.111 22 N -0.060 5.060 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.198 0.802 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.168 0.832 32 H 0.156 0.844 33 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 4.291 -17.329 -2.662 18.050 hybrid contribution 0.831 -0.835 -1.675 2.048 sum 5.122 -18.164 -4.338 19.364 Atomic orbital electron populations 1.69969 1.06164 1.27245 1.48995 1.25001 0.94878 0.99471 0.94696 0.86542 0.79497 0.82578 0.78718 1.20102 1.21123 1.20011 1.20913 0.92995 0.90171 1.53123 0.92185 1.19390 0.93842 0.89746 0.99265 1.22697 0.95784 0.78753 1.03449 1.47903 1.26144 1.15148 1.17298 1.23318 1.06564 0.90543 1.00550 1.21275 1.00075 0.97701 0.98426 1.19657 1.03539 0.87100 0.94896 1.21373 0.99882 0.86436 0.92557 0.86570 1.59017 1.05372 1.55429 1.12186 1.25723 0.80420 0.89742 0.75780 1.90716 1.31421 1.59708 1.59196 1.84632 1.43069 1.41358 1.63530 1.75190 1.20972 1.02310 1.12622 1.78406 1.03622 1.08830 1.15159 0.92528 0.95862 0.94395 0.89310 0.88929 0.80160 0.88992 0.89860 0.83215 0.84372 0.73707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -14.12 9.11 -34.44 -0.31 -14.43 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.38 5.10 -27.88 -0.14 0.24 16 10 C 0.11 2.12 6.39 -4.04 -0.03 2.09 16 11 N -0.27 -5.05 3.44 -61.26 -0.21 -5.26 16 12 C -0.06 -0.85 11.49 -17.05 -0.20 -1.04 16 13 C -0.04 -0.52 6.45 -82.78 -0.53 -1.06 16 14 C -0.01 -0.13 5.42 -27.88 -0.15 -0.28 16 15 C 0.11 1.12 3.25 -68.86 -0.22 0.89 16 16 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 17 N -0.79 -8.71 8.05 -5.65 -0.05 -8.76 16 18 C 0.44 4.20 7.57 36.01 0.27 4.47 16 19 O -0.52 -6.36 17.01 -18.75 -0.32 -6.68 16 20 O -0.52 -3.67 13.42 -39.27 -0.53 -4.20 16 21 N -0.25 -4.61 11.60 33.29 0.39 -4.23 16 22 N -0.08 -1.68 12.92 60.35 0.78 -0.90 16 23 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 1.04 8.12 -51.93 -0.42 0.62 16 26 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 27 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 28 H 0.18 1.91 8.06 -52.48 -0.42 1.49 16 29 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.35 3.91 8.58 -39.29 -0.34 3.58 16 32 H 0.34 3.25 9.06 -39.29 -0.36 2.89 16 33 H 0.40 1.29 9.10 45.56 0.41 1.71 16 LS Contribution 298.57 15.07 4.50 4.50 Total: -1.00 -33.76 298.57 -4.33 -38.09 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -3.20 Total: 4.53 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -1.41 Total: -7.49 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 1.65 Total: -44.42 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.85 Total: -10.88 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.76 -4.33 -38.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067005.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.289 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds