Wall clock time and date at job start Sun Mar 29 2020 23:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48506 * 109.47015 * 240.00109 * 3 2 1 5 5 H 1.48505 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47043 * 120.00043 * 3 2 1 7 7 C 1.37879 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47172 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46980 * 180.02562 * 10 9 7 12 12 C 1.35312 * 125.86803 * 124.99739 * 11 10 9 13 13 C 1.35348 * 106.17374 * 179.97438 * 12 11 10 14 14 C 1.50698 * 126.75033 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47333 * 125.00361 * 14 13 12 16 16 H 1.09004 * 109.46693 * 304.99888 * 15 14 13 17 17 N 1.46897 * 109.47373 * 64.99827 * 15 14 13 18 18 C 1.50702 * 109.47089 * 184.99958 * 15 14 13 19 19 O 1.20822 * 119.99854 * 259.72068 * 18 15 14 20 20 O 1.34234 * 119.99997 * 79.99903 * 18 15 14 21 21 N 1.33769 * 106.49737 * 0.26265 * 13 12 11 22 22 N 1.28631 * 108.88853 * 359.56441 * 21 13 12 23 23 H 0.97004 * 119.99379 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46675 * 60.00409 * 9 7 2 25 25 H 1.09000 * 109.46920 * 300.00643 * 9 7 2 26 26 H 1.08995 * 109.47318 * 60.00042 * 10 9 7 27 27 H 1.09000 * 109.47229 * 299.99849 * 10 9 7 28 28 H 1.08003 * 126.91070 * 359.94947 * 12 11 10 29 29 H 1.09005 * 109.47128 * 4.99940 * 14 13 12 30 30 H 1.09003 * 109.47056 * 245.00018 * 14 13 12 31 31 H 1.00902 * 111.00147 * 60.00024 * 17 15 14 32 32 H 1.00895 * 111.00002 * 183.95679 * 17 15 14 33 33 H 0.96695 * 116.99910 * 179.72143 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 1.6612 -5.9316 -0.8996 13 6 0.7977 -6.9047 -0.5262 14 6 0.5843 -8.2313 -1.2086 15 6 0.7790 -9.3624 -0.1969 16 1 1.7590 -9.2669 0.2707 17 7 -0.2651 -9.2830 0.8334 18 6 0.6870 -10.6901 -0.9039 19 8 -0.3356 -11.3317 -0.8537 20 8 1.7430 -11.1625 -1.5848 21 7 0.1674 -6.4551 0.5646 22 7 0.6175 -5.2853 0.8532 23 1 -0.4849 0.8401 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5570 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 2.3332 -5.9500 -1.7449 29 1 1.3032 -8.3421 -2.0204 30 1 -0.4278 -8.2741 -1.6112 31 1 -1.1836 -9.3690 0.4248 32 1 -0.1209 -9.9797 1.5488 33 1 1.6376 -12.0204 -2.0185 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601067005.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:28 Heat of formation + Delta-G solvation = -33.183086 kcal Electronic energy + Delta-G solvation = -17956.082095 eV Core-core repulsion = 14824.510854 eV Total energy + Delta-G solvation = -3131.571242 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.99753 -41.38867 -37.42496 -36.93289 -36.14562 -34.62364 -32.62496 -31.64095 -29.34990 -27.30100 -26.05730 -24.16384 -22.62001 -22.05609 -21.11605 -19.22134 -18.84512 -18.00379 -17.47936 -17.19363 -16.98820 -16.45253 -16.27984 -15.53328 -15.36813 -15.18136 -14.51493 -14.35446 -13.95024 -13.58298 -13.12649 -12.90590 -12.72940 -12.60137 -12.53862 -12.36530 -12.15545 -11.85524 -11.84048 -11.49246 -11.37694 -10.70636 -10.59055 -10.01691 -9.78493 -8.24076 -6.38458 0.89625 1.09409 1.43407 1.46958 1.54617 1.73175 1.76933 2.14926 2.41670 3.11176 3.45128 3.55345 3.83529 4.00829 4.14675 4.16763 4.32914 4.35231 4.48693 4.63108 4.72441 4.88520 5.14829 5.34026 5.39736 5.53457 5.57244 5.66505 5.87506 6.06304 6.10081 6.43483 6.78462 6.96308 7.32805 7.83052 8.88321 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.065155 B = 0.003400 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.638994 B = 8234.356792 C = 8440.055161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.259 1.259 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.023 3.977 10 C 0.127 3.873 11 N -0.285 5.285 12 C -0.043 4.043 13 C -0.035 4.035 14 C -0.009 4.009 15 C 0.116 3.884 16 H 0.123 0.877 17 N -0.807 5.807 18 C 0.458 3.542 19 O -0.553 6.553 20 O -0.508 6.508 21 N -0.266 5.266 22 N -0.142 5.142 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.006 1.006 26 H 0.097 0.903 27 H 0.130 0.870 28 H 0.230 0.770 29 H 0.128 0.872 30 H 0.081 0.919 31 H 0.350 0.650 32 H 0.349 0.651 33 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.819 -19.620 -5.856 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.184 1.184 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.099 0.901 9 C -0.015 4.015 10 C 0.007 3.993 11 N -0.077 5.077 12 C -0.195 4.195 13 C -0.176 4.176 14 C -0.049 4.049 15 C 0.001 3.999 16 H 0.141 0.859 17 N -0.337 5.337 18 C 0.298 3.702 19 O -0.443 6.443 20 O -0.320 6.320 21 N -0.131 5.131 22 N -0.121 5.121 23 H 0.073 0.927 24 H 0.010 0.990 25 H 0.012 0.988 26 H 0.115 0.885 27 H 0.148 0.852 28 H 0.247 0.753 29 H 0.146 0.854 30 H 0.100 0.900 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 6.949 -18.118 -4.218 19.858 hybrid contribution 0.021 -0.732 -1.249 1.448 sum 6.970 -18.849 -5.467 20.827 Atomic orbital electron populations 1.70141 1.08281 1.28130 1.50838 1.26058 0.95652 1.03853 0.94310 0.85370 0.78043 0.77312 0.79534 1.18382 1.21569 1.18929 1.21459 0.94176 0.90833 1.51730 0.90061 1.19133 0.94277 0.92424 0.95635 1.22418 0.94102 0.77075 1.05685 1.47847 1.26177 1.15626 1.18064 1.24157 1.06232 0.88855 1.00279 1.21972 0.99066 0.99293 0.97251 1.19825 1.04597 0.84970 0.95478 1.21295 0.99711 0.86653 0.92290 0.85901 1.59041 1.05632 1.56040 1.13035 1.25382 0.80189 0.89247 0.75337 1.90719 1.32707 1.60540 1.60369 1.84569 1.41731 1.42669 1.62995 1.75134 1.21579 1.01978 1.14379 1.78412 1.05940 1.10275 1.17441 0.92698 0.99043 0.98758 0.88485 0.85194 0.75327 0.85396 0.90045 0.83578 0.83753 0.71437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 42.15 29.54 68.60 2.03 44.17 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.54 -28.67 9.11 25.60 0.23 -28.44 16 8 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.02 1.18 5.10 29.85 0.15 1.33 16 10 C 0.13 4.63 6.39 86.38 0.55 5.18 16 11 N -0.28 -10.31 3.44 -347.74 -1.20 -11.51 16 12 C -0.04 -1.15 11.49 83.49 0.96 -0.19 16 13 C -0.04 -0.99 6.45 41.60 0.27 -0.73 16 14 C -0.01 -0.17 5.42 29.85 0.16 -0.01 16 15 C 0.12 2.07 3.25 44.17 0.14 2.21 16 16 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 17 N -0.81 -17.46 8.05 -171.80 -1.38 -18.85 16 18 C 0.46 7.64 7.57 71.24 0.54 8.17 16 19 O -0.55 -12.72 17.01 21.98 0.37 -12.35 16 20 O -0.51 -5.56 13.42 -51.46 -0.69 -6.25 16 21 N -0.27 -10.04 11.60 -48.60 -0.56 -10.61 16 22 N -0.14 -6.07 12.92 37.02 0.48 -5.59 16 23 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 24 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 25 H -0.01 -0.35 8.12 -2.39 -0.02 -0.37 16 26 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 27 H 0.13 3.75 8.07 -2.39 -0.02 3.73 16 28 H 0.23 3.61 8.06 -2.91 -0.02 3.58 16 29 H 0.13 1.45 8.12 -2.38 -0.02 1.43 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.35 7.79 8.58 -89.69 -0.77 7.02 16 32 H 0.35 6.54 9.06 -89.70 -0.81 5.73 16 33 H 0.42 1.34 9.10 -74.06 -0.67 0.67 16 Total: -1.00 -76.51 298.57 1.71 -74.80 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -1.09 Total: 14.43 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 3.47 Total: -12.01 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -2.38 Total: -102.79 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.32 Total: -18.60 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -76.51 1.71 -74.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067005.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.618 kcal (2) G-P(sol) polarization free energy of solvation -76.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds