Wall clock time and date at job start Mon Mar 30 2020 00:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00016 * 2 1 4 4 H 1.48499 * 109.47307 * 270.00638 * 3 2 1 5 5 H 1.48503 * 109.46821 * 30.00225 * 3 2 1 6 6 H 1.48501 * 109.47339 * 150.00276 * 3 2 1 7 7 C 1.37877 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00089 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99994 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47326 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47326 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00167 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99929 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00311 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47745 * 180.02562 * 14 13 11 16 16 N 1.30834 * 125.95659 * 275.02647 * 15 14 13 17 17 C 1.33241 * 109.82716 * 179.97438 * 16 15 14 18 18 C 1.50701 * 125.52704 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.47009 * 90.00429 * 18 17 16 20 20 N 1.30718 * 108.94820 * 359.97438 * 17 16 15 21 21 N 1.34428 * 125.96307 * 94.99803 * 15 14 13 22 22 H 0.96998 * 126.82131 * 0.02562 * 21 15 14 23 23 H 0.96991 * 120.00050 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47315 * 59.99812 * 9 7 2 25 25 H 1.09001 * 109.47117 * 299.99289 * 9 7 2 26 26 H 1.08995 * 109.47309 * 59.99000 * 10 9 7 27 27 H 1.09001 * 109.46520 * 299.99750 * 10 9 7 28 28 H 0.97005 * 120.00147 * 359.97438 * 13 11 10 29 29 H 1.09002 * 109.47047 * 59.99381 * 14 13 11 30 30 H 1.09007 * 109.46754 * 300.00510 * 14 13 11 31 31 H 1.08999 * 109.46976 * 209.99632 * 18 17 16 32 32 H 1.08988 * 109.47287 * 330.00039 * 18 17 16 33 33 H 0.96703 * 114.00037 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6365 -0.0010 11 6 5.5286 -2.6365 -0.0009 12 8 6.1350 -1.5862 -0.0015 13 7 6.2025 -3.8037 -0.0003 14 6 7.6675 -3.8037 -0.0008 15 6 8.1699 -5.2244 -0.0006 16 7 8.3389 -5.9793 1.0546 17 6 8.7956 -7.1755 0.6860 18 6 9.1131 -8.3168 1.6176 19 8 7.9479 -9.1248 1.7954 20 7 8.9235 -7.1987 -0.6147 21 7 8.5221 -5.9374 -1.0844 22 1 8.5025 -5.6400 -2.0075 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6801 -0.8912 26 1 3.6579 -3.1506 -0.8906 27 1 3.6587 -3.1500 0.8893 28 1 5.7175 -4.6438 0.0005 29 1 8.0312 -3.2891 0.8886 30 1 8.0305 -3.2904 -0.8914 31 1 9.9131 -8.9220 1.1912 32 1 9.4313 -7.9209 2.5818 33 1 8.0791 -9.8799 2.3850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641007442.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:20 Heat of formation + Delta-G solvation = -6.292745 kcal Electronic energy + Delta-G solvation = -17641.391558 eV Core-core repulsion = 14510.986369 eV Total energy + Delta-G solvation = -3130.405189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 4.23 seconds Orbital eigenvalues (eV) -42.61848 -39.37221 -37.26259 -35.11765 -33.51092 -33.09471 -32.00646 -31.22721 -28.17623 -27.20868 -25.53487 -21.99736 -21.29775 -20.91064 -19.86710 -18.41048 -18.00371 -17.28221 -16.35564 -16.12909 -15.49853 -15.29907 -15.11274 -14.76864 -14.14167 -13.91838 -13.54331 -13.19036 -12.58082 -12.55293 -12.46457 -12.14550 -11.44373 -10.97670 -10.67250 -10.58776 -10.40366 -10.21869 -10.19788 -10.07045 -9.79743 -9.33453 -9.19247 -9.13588 -8.51463 -6.03451 -4.02552 1.01986 2.12363 2.22193 2.98102 3.30927 3.37316 3.44095 3.48427 3.54555 3.99710 4.24524 4.47388 4.50229 4.85177 4.87785 5.14940 5.28576 5.31865 5.49404 5.74107 5.89579 6.03508 6.06264 6.30589 6.56396 6.64967 7.15787 7.33323 7.41200 7.55898 7.63166 7.77471 8.43635 8.54013 8.99513 9.59215 11.09401 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.041711 B = 0.003438 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.132002 B = 8141.934071 C = 8516.643647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.121 4.121 11 C 0.516 3.484 12 O -0.535 6.535 13 N -0.738 5.738 14 C 0.199 3.801 15 C 0.275 3.725 16 N -0.510 5.510 17 C 0.224 3.776 18 C 0.174 3.826 19 O -0.564 6.564 20 N -0.290 5.290 21 N -0.467 5.467 22 H 0.445 0.555 23 H 0.263 0.737 24 H 0.025 0.975 25 H 0.019 0.981 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.404 0.596 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.102 -16.223 0.590 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.161 4.161 11 C 0.305 3.695 12 O -0.411 6.411 13 N -0.395 5.395 14 C 0.073 3.927 15 C -0.004 4.004 16 N -0.240 5.240 17 C -0.059 4.059 18 C 0.093 3.907 19 O -0.369 6.369 20 N -0.121 5.121 21 N -0.187 5.187 22 H 0.292 0.708 23 H 0.073 0.927 24 H 0.043 0.957 25 H 0.038 0.962 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.238 0.762 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 20.335 -15.449 0.201 25.539 hybrid contribution 0.349 0.349 -0.352 0.606 sum 20.684 -15.099 -0.151 25.609 Atomic orbital electron populations 1.69911 1.06316 1.27000 1.50981 1.24979 0.94714 0.99257 0.94318 0.86786 0.80636 0.83366 0.78704 1.20272 1.21442 1.18479 1.21106 0.89245 0.94603 1.51430 0.90911 1.19381 0.96478 0.90035 0.97740 1.21690 0.87261 1.03483 1.03650 1.21613 0.91670 0.82222 0.73963 1.90673 1.70665 1.31236 1.48489 1.46147 1.04781 1.10133 1.78419 1.19615 0.82562 0.85277 1.05255 1.24357 0.96731 0.96419 0.82911 1.70394 1.21071 1.03052 1.29447 1.23879 0.98156 0.93922 0.89984 1.20028 0.87616 0.87272 0.95745 1.86521 1.35269 1.43605 1.71512 1.78008 1.23236 0.98599 1.12302 1.48073 1.50081 1.09808 1.10745 0.70834 0.92694 0.95694 0.96229 0.89453 0.89250 0.76192 0.87602 0.89074 0.90903 0.90271 0.76167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.37 27.47 -169.99 -4.67 17.70 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.53 -14.93 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 10 C -0.12 -2.27 5.64 -27.88 -0.16 -2.42 16 11 C 0.52 8.80 7.83 -10.99 -0.09 8.72 16 12 O -0.54 -11.04 15.98 5.56 0.09 -10.95 16 13 N -0.74 -9.27 5.55 -61.48 -0.34 -9.62 16 14 C 0.20 2.12 6.30 -5.20 -0.03 2.09 16 15 C 0.28 2.94 7.60 -155.70 -1.18 1.76 16 16 N -0.51 -6.43 11.19 -8.16 -0.09 -6.52 16 17 C 0.22 2.60 7.77 -156.85 -1.22 1.39 16 18 C 0.17 1.38 7.67 36.01 0.28 1.65 16 19 O -0.56 -4.85 13.64 -35.23 -0.48 -5.33 16 20 N -0.29 -3.35 12.80 32.42 0.41 -2.94 16 21 N -0.47 -4.38 7.45 32.62 0.24 -4.14 16 22 H 0.45 2.71 8.96 -182.33 -1.63 1.08 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 25 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 26 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.40 4.47 8.46 -40.82 -0.35 4.13 16 29 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.50 8.14 -51.94 -0.42 0.08 16 33 H 0.39 1.11 9.12 45.56 0.42 1.52 16 LS Contribution 296.43 15.07 4.47 4.47 Total: -1.00 -37.70 296.43 -6.97 -44.67 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -4.45 Total: 0.04 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -2.93 Total: -0.21 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 1.00 Total: -50.38 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.39 Total: -16.28 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -37.70 -6.97 -44.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641007442.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.375 kcal (2) G-P(sol) polarization free energy of solvation -37.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.23 seconds