Wall clock time and date at job start Mon Mar 30 2020 00:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00016 * 2 1 4 4 H 1.48499 * 109.47307 * 270.00638 * 3 2 1 5 5 H 1.48503 * 109.46821 * 30.00225 * 3 2 1 6 6 H 1.48501 * 109.47339 * 150.00276 * 3 2 1 7 7 C 1.37877 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00089 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99994 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47326 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47326 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00167 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99929 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00311 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47745 * 180.02562 * 14 13 11 16 16 N 1.30834 * 125.95659 * 275.02647 * 15 14 13 17 17 C 1.33241 * 109.82716 * 179.97438 * 16 15 14 18 18 C 1.50701 * 125.52704 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.47009 * 90.00429 * 18 17 16 20 20 N 1.30718 * 108.94820 * 359.97438 * 17 16 15 21 21 N 1.34428 * 125.96307 * 94.99803 * 15 14 13 22 22 H 0.96998 * 126.82131 * 0.02562 * 21 15 14 23 23 H 0.96991 * 120.00050 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47315 * 59.99812 * 9 7 2 25 25 H 1.09001 * 109.47117 * 299.99289 * 9 7 2 26 26 H 1.08995 * 109.47309 * 59.99000 * 10 9 7 27 27 H 1.09001 * 109.46520 * 299.99750 * 10 9 7 28 28 H 0.97005 * 120.00147 * 359.97438 * 13 11 10 29 29 H 1.09002 * 109.47047 * 59.99381 * 14 13 11 30 30 H 1.09007 * 109.46754 * 300.00510 * 14 13 11 31 31 H 1.08999 * 109.46976 * 209.99632 * 18 17 16 32 32 H 1.08988 * 109.47287 * 330.00039 * 18 17 16 33 33 H 0.96703 * 114.00037 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6365 -0.0010 11 6 5.5286 -2.6365 -0.0009 12 8 6.1350 -1.5862 -0.0015 13 7 6.2025 -3.8037 -0.0003 14 6 7.6675 -3.8037 -0.0008 15 6 8.1699 -5.2244 -0.0006 16 7 8.3389 -5.9793 1.0546 17 6 8.7956 -7.1755 0.6860 18 6 9.1131 -8.3168 1.6176 19 8 7.9479 -9.1248 1.7954 20 7 8.9235 -7.1987 -0.6147 21 7 8.5221 -5.9374 -1.0844 22 1 8.5025 -5.6400 -2.0075 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6801 -0.8912 26 1 3.6579 -3.1506 -0.8906 27 1 3.6587 -3.1500 0.8893 28 1 5.7175 -4.6438 0.0005 29 1 8.0312 -3.2891 0.8886 30 1 8.0305 -3.2904 -0.8914 31 1 9.9131 -8.9220 1.1912 32 1 9.4313 -7.9209 2.5818 33 1 8.0791 -9.8799 2.3850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641007442.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:19 Heat of formation + Delta-G solvation = -38.688382 kcal Electronic energy + Delta-G solvation = -17642.796339 eV Core-core repulsion = 14510.986369 eV Total energy + Delta-G solvation = -3131.809969 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.43184 -40.71341 -37.85081 -36.26157 -35.49929 -33.90265 -33.41617 -32.70881 -29.30960 -28.08723 -27.08659 -23.33388 -22.56116 -21.71074 -21.29693 -19.40714 -19.02999 -18.58083 -17.68178 -17.37317 -16.72785 -16.35598 -16.11141 -15.87739 -15.45952 -15.06739 -14.86397 -14.64679 -14.30150 -13.86917 -13.37781 -13.20795 -13.01693 -12.85765 -12.10284 -11.94859 -11.73868 -11.40991 -11.38812 -11.37548 -11.16049 -11.05306 -10.76162 -10.68901 -10.25929 -8.29443 -6.32775 0.19570 1.36170 1.37177 1.38510 1.40504 1.53144 1.63574 2.31560 2.37385 2.65503 3.06524 3.29701 3.50088 3.91856 3.97569 4.20696 4.35232 4.39933 4.50014 4.51645 4.59261 4.95788 5.00597 5.11339 5.19858 5.39740 5.47740 5.63237 5.91059 6.24798 6.40669 6.74228 6.82401 6.87496 7.18757 7.32698 8.86405 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.041711 B = 0.003438 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.132002 B = 8141.934071 C = 8516.643647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.530 4.530 8 H 0.047 0.953 9 C 0.005 3.995 10 C -0.118 4.118 11 C 0.526 3.474 12 O -0.573 6.573 13 N -0.719 5.719 14 C 0.203 3.797 15 C 0.278 3.722 16 N -0.537 5.537 17 C 0.209 3.791 18 C 0.172 3.828 19 O -0.589 6.589 20 N -0.306 5.306 21 N -0.454 5.454 22 H 0.459 0.541 23 H 0.267 0.733 24 H 0.013 0.987 25 H 0.014 0.986 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.414 0.586 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.874 -16.758 0.381 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.568 4.568 8 H 0.066 0.934 9 C -0.033 4.033 10 C -0.157 4.157 11 C 0.315 3.685 12 O -0.452 6.452 13 N -0.373 5.373 14 C 0.077 3.923 15 C -0.002 4.002 16 N -0.267 5.267 17 C -0.074 4.074 18 C 0.092 3.908 19 O -0.398 6.398 20 N -0.138 5.138 21 N -0.176 5.176 22 H 0.308 0.692 23 H 0.076 0.924 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.250 0.750 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 22.127 -16.051 -0.019 27.335 hybrid contribution -0.213 0.384 -0.287 0.524 sum 21.913 -15.667 -0.306 26.940 Atomic orbital electron populations 1.70034 1.07936 1.28115 1.52605 1.25854 0.95506 1.03058 0.94257 0.85782 0.79305 0.79170 0.79186 1.19245 1.20667 1.18140 1.21455 0.91457 0.93627 1.50285 0.93425 1.19236 0.93738 0.93646 0.96722 1.21504 0.89020 1.00082 1.05129 1.21053 0.90820 0.82721 0.73917 1.90666 1.71056 1.32741 1.50715 1.45821 1.05879 1.09185 1.76461 1.19697 0.80823 0.85490 1.06253 1.24193 0.96768 0.96158 0.83065 1.70385 1.21958 1.03846 1.30558 1.24586 0.97744 0.94539 0.90488 1.20237 0.87821 0.86786 0.95961 1.86449 1.36021 1.44816 1.72510 1.77969 1.23791 0.99458 1.12606 1.48009 1.49164 1.09082 1.11298 0.69176 0.92424 0.96900 0.96777 0.87777 0.88173 0.75031 0.87926 0.86875 0.88697 0.88895 0.73597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 2 C 0.01 0.63 5.47 84.65 0.46 1.09 16 3 Si 0.94 46.09 27.47 68.60 1.88 47.98 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.26 -12.38 6.54 99.48 0.65 -11.73 16 7 C -0.53 -30.30 9.66 25.60 0.25 -30.05 16 8 H 0.05 2.88 7.99 -2.91 -0.02 2.86 16 9 C 0.00 0.22 3.33 29.85 0.10 0.32 16 10 C -0.12 -4.24 5.64 29.85 0.17 -4.07 16 11 C 0.53 16.98 7.83 87.66 0.69 17.66 16 12 O -0.57 -22.77 15.98 -3.01 -0.05 -22.81 16 13 N -0.72 -16.39 5.55 -466.80 -2.59 -18.98 16 14 C 0.20 3.85 6.30 85.63 0.54 4.39 16 15 C 0.28 5.38 7.60 138.22 1.05 6.43 16 16 N -0.54 -12.68 11.19 -179.73 -2.01 -14.69 16 17 C 0.21 4.54 7.77 138.63 1.08 5.62 16 18 C 0.17 2.42 7.67 71.24 0.55 2.96 16 19 O -0.59 -9.18 13.64 -148.98 -2.03 -11.22 16 20 N -0.31 -6.57 12.80 -51.33 -0.66 -7.22 16 21 N -0.45 -7.58 7.45 -50.71 -0.38 -7.96 16 22 H 0.46 4.53 8.96 -213.10 -1.91 2.62 16 23 H 0.27 15.61 8.31 -92.72 -0.77 14.84 16 24 H 0.01 0.64 7.16 -2.39 -0.02 0.62 16 25 H 0.01 0.68 7.53 -2.39 -0.02 0.67 16 26 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 27 H 0.10 3.38 8.14 -2.39 -0.02 3.37 16 28 H 0.41 8.12 8.46 -92.70 -0.78 7.33 16 29 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.41 1.64 9.12 -74.06 -0.68 0.96 16 Total: -1.00 -80.56 296.43 -2.91 -83.46 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -2.25 Total: 6.04 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 4.88 Total: 4.36 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -5.34 Total: -107.81 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -2.08 Total: -34.03 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.88 Total: 47.98 kcal Total: -80.56 -2.91 -83.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641007442.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.774 kcal (2) G-P(sol) polarization free energy of solvation -80.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds