Wall clock time and date at job start Sun Mar 29 2020 23:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 5 5 N 1.29998 * 126.22105 * 60.02012 * 4 2 1 6 6 O 1.21281 * 110.45946 * 179.97438 * 5 4 2 7 7 C 1.34000 * 109.75957 * 359.97438 * 6 5 4 8 8 N 1.37967 * 126.65750 * 180.02562 * 7 6 5 9 9 C 1.34771 * 119.99910 * 359.97438 * 8 7 6 10 10 O 1.21569 * 119.99886 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00052 * 179.97438 * 9 8 7 12 12 C 1.46507 * 120.00143 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47079 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00355 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99918 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00169 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 119.99899 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47119 * 89.99571 * 17 15 13 19 19 H 1.48496 * 109.46945 * 209.99900 * 17 15 13 20 20 H 1.48497 * 109.46952 * 329.99380 * 17 15 13 21 21 N 1.32024 * 106.68914 * 359.76237 * 7 6 5 22 22 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 25 25 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 26 26 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 27 27 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 29 29 H 0.97001 * 119.99751 * 179.97438 * 8 7 6 30 30 H 0.97001 * 120.00374 * 0.02562 * 11 9 8 31 31 H 1.09005 * 109.47154 * 300.00535 * 12 11 9 32 32 H 1.09001 * 109.46902 * 59.99951 * 12 11 9 33 33 H 0.96996 * 120.00075 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 1.7944 -0.3729 -2.4632 6 8 2.3391 -1.1424 -3.2261 7 6 3.0008 -2.0774 -2.5307 8 7 3.7398 -3.1207 -3.0493 9 6 3.8471 -3.2721 -4.3842 10 8 3.2924 -2.4898 -5.1313 11 7 4.5694 -4.2909 -4.8909 12 6 4.6866 -4.4553 -6.3419 13 6 5.5410 -5.6594 -6.6437 14 1 5.9549 -6.2441 -5.8356 15 6 5.7933 -6.0153 -7.9517 16 7 6.5394 -7.0659 -8.2151 17 14 5.0767 -5.0044 -9.3496 18 1 6.0290 -3.9268 -9.7199 19 1 4.8406 -5.8816 -10.5243 20 1 3.7909 -4.4013 -8.9158 21 7 2.8131 -1.8033 -1.2529 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 4.1821 -3.7451 -2.4532 30 1 5.0118 -4.9154 -4.2948 31 1 3.6953 -4.5953 -6.7730 32 1 5.1475 -3.5661 -6.7722 33 1 6.7166 -7.3164 -9.1352 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670765879.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:34 Heat of formation + Delta-G solvation = 37.310654 kcal Electronic energy + Delta-G solvation = -18171.987972 eV Core-core repulsion = 15043.473569 eV Total energy + Delta-G solvation = -3128.514404 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.38528 -40.07738 -36.92034 -35.86040 -34.63295 -33.88117 -32.51890 -30.74929 -28.06385 -27.48420 -24.76427 -23.99438 -22.67750 -21.33981 -20.04186 -18.74208 -18.25001 -18.05802 -16.81549 -16.40597 -15.35170 -15.13099 -14.96741 -14.49278 -14.42984 -13.67353 -13.40970 -12.84799 -12.52041 -12.48885 -12.44664 -11.96661 -11.95455 -11.66181 -11.33786 -11.13885 -10.93261 -10.91228 -10.79206 -10.25459 -10.02233 -9.61104 -9.09997 -8.88006 -8.40564 -6.30399 -4.34542 1.26325 1.78781 2.20615 3.14779 3.21957 3.29788 3.32335 3.36887 3.74777 4.20540 4.25848 4.62257 4.77333 4.77726 4.90880 5.04840 5.32194 5.39372 5.51590 5.56419 5.68933 5.80633 5.90800 6.03687 6.16275 6.34820 6.78994 6.91311 6.92786 7.22902 7.95882 8.25666 8.37970 8.56852 8.69540 9.27619 10.81124 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.062213 B = 0.003747 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.955283 B = 7470.009610 C = 7728.908095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.001 4.001 3 C -0.145 4.145 4 C 0.193 3.807 5 N -0.389 5.389 6 O 0.088 5.912 7 C 0.437 3.563 8 N -0.618 5.618 9 C 0.689 3.311 10 O -0.557 6.557 11 N -0.699 5.699 12 C 0.235 3.765 13 C -0.549 4.549 14 H 0.082 0.918 15 C 0.081 3.919 16 N -0.889 5.889 17 Si 0.876 3.124 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.259 1.259 21 N -0.519 5.519 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.434 0.566 30 H 0.400 0.600 31 H 0.031 0.969 32 H 0.026 0.974 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.812 10.947 16.260 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 C -0.203 4.203 4 C -0.081 4.081 5 N -0.104 5.104 6 O 0.037 5.963 7 C 0.127 3.873 8 N -0.282 5.282 9 C 0.387 3.613 10 O -0.431 6.431 11 N -0.351 5.351 12 C 0.114 3.886 13 C -0.586 4.586 14 H 0.100 0.900 15 C -0.124 4.124 16 N -0.525 5.525 17 Si 0.702 3.298 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.184 1.184 21 N -0.264 5.264 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.275 0.725 30 H 0.234 0.766 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.608 12.080 15.414 21.392 hybrid contribution 0.403 -0.534 -0.394 0.777 sum -8.205 11.546 15.020 20.645 Atomic orbital electron populations 1.21852 0.92938 1.02631 1.02914 1.19525 0.96330 0.95281 0.90966 1.21850 1.01539 0.94033 1.02914 1.25425 0.95874 0.92202 0.94638 1.74601 1.19181 1.14159 1.02454 1.85656 1.48313 1.29079 1.33252 1.23789 0.90775 0.88044 0.84646 1.41714 1.51248 1.26890 1.08317 1.16111 0.81511 0.83707 0.79941 1.91036 1.50483 1.45189 1.56345 1.45449 1.51212 1.27589 1.10861 1.19593 0.97790 0.97682 0.73571 1.21008 1.32347 1.10964 0.94330 0.90013 1.24757 0.94212 0.94813 0.98620 1.69863 1.36894 1.25326 1.20449 0.86834 0.80778 0.80395 0.81824 1.19704 1.20773 1.18352 1.72208 1.23068 1.17458 1.13667 0.91757 0.92241 0.91165 0.88080 0.91163 0.92245 0.91759 0.72501 0.76557 0.95124 0.95583 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.18 37.16 0.34 -0.87 16 2 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16 3 C -0.15 -1.21 9.17 37.16 0.34 -0.87 16 4 C 0.19 2.66 6.71 -156.47 -1.05 1.60 16 5 N -0.39 -6.26 12.15 31.12 0.38 -5.88 16 6 O 0.09 1.56 9.69 -4.43 -0.04 1.52 16 7 C 0.44 6.85 8.99 -87.10 -0.78 6.06 16 8 N -0.62 -8.67 5.37 -17.65 -0.09 -8.77 16 9 C 0.69 12.42 8.52 -86.93 -0.74 11.68 16 10 O -0.56 -12.32 15.15 -16.31 -0.25 -12.57 16 11 N -0.70 -12.77 5.55 -66.42 -0.37 -13.14 16 12 C 0.24 5.38 4.50 -5.19 -0.02 5.36 16 13 C -0.55 -14.18 9.83 -34.44 -0.34 -14.52 16 14 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.89 -25.46 13.96 55.43 0.77 -24.69 16 17 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 21 N -0.52 -7.50 11.59 -12.97 -0.15 -7.65 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.43 4.37 8.83 -40.82 -0.36 4.01 16 30 H 0.40 6.08 8.34 -40.82 -0.34 5.74 16 31 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 32 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 33 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 292.52 15.07 4.41 4.41 Total: -1.00 -31.72 292.52 -6.68 -38.40 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.01 Total: 2.25 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: -2.66 Total: 10.22 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.54 Total: -60.13 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.29 Total: -11.05 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.72 -6.68 -38.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670765879.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.707 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds