Wall clock time and date at job start Sun Mar 29 2020 23:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 5 5 N 1.29998 * 126.22105 * 60.02012 * 4 2 1 6 6 O 1.21281 * 110.45946 * 179.97438 * 5 4 2 7 7 C 1.34000 * 109.75957 * 359.97438 * 6 5 4 8 8 N 1.37967 * 126.65750 * 180.02562 * 7 6 5 9 9 C 1.34771 * 119.99910 * 359.97438 * 8 7 6 10 10 O 1.21569 * 119.99886 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00052 * 179.97438 * 9 8 7 12 12 C 1.46507 * 120.00143 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47079 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00355 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99918 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00169 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 119.99899 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47119 * 89.99571 * 17 15 13 19 19 H 1.48496 * 109.46945 * 209.99900 * 17 15 13 20 20 H 1.48497 * 109.46952 * 329.99380 * 17 15 13 21 21 N 1.32024 * 106.68914 * 359.76237 * 7 6 5 22 22 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 25 25 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 26 26 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 27 27 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 29 29 H 0.97001 * 119.99751 * 179.97438 * 8 7 6 30 30 H 0.97001 * 120.00374 * 0.02562 * 11 9 8 31 31 H 1.09005 * 109.47154 * 300.00535 * 12 11 9 32 32 H 1.09001 * 109.46902 * 59.99951 * 12 11 9 33 33 H 0.96996 * 120.00075 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 1.7944 -0.3729 -2.4632 6 8 2.3391 -1.1424 -3.2261 7 6 3.0008 -2.0774 -2.5307 8 7 3.7398 -3.1207 -3.0493 9 6 3.8471 -3.2721 -4.3842 10 8 3.2924 -2.4898 -5.1313 11 7 4.5694 -4.2909 -4.8909 12 6 4.6866 -4.4553 -6.3419 13 6 5.5410 -5.6594 -6.6437 14 1 5.9549 -6.2441 -5.8356 15 6 5.7933 -6.0153 -7.9517 16 7 6.5394 -7.0659 -8.2151 17 14 5.0767 -5.0044 -9.3496 18 1 6.0290 -3.9268 -9.7199 19 1 4.8406 -5.8816 -10.5243 20 1 3.7909 -4.4013 -8.9158 21 7 2.8131 -1.8033 -1.2529 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 4.1821 -3.7451 -2.4532 30 1 5.0118 -4.9154 -4.2948 31 1 3.6953 -4.5953 -6.7730 32 1 5.1475 -3.5661 -6.7722 33 1 6.7166 -7.3164 -9.1352 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670765879.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:34 Heat of formation + Delta-G solvation = 13.216864 kcal Electronic energy + Delta-G solvation = -18173.032758 eV Core-core repulsion = 15043.473569 eV Total energy + Delta-G solvation = -3129.559189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.57260 -41.55392 -37.89451 -37.19507 -36.31347 -34.97478 -34.44507 -31.99397 -29.89952 -28.12209 -25.86705 -25.36539 -24.13397 -22.83445 -21.29036 -20.19917 -19.46692 -19.27547 -18.50331 -17.80149 -16.85405 -16.68812 -16.20569 -16.01833 -15.20958 -15.11555 -14.58058 -14.42356 -14.39860 -13.61024 -13.29843 -13.16686 -13.08434 -12.71160 -12.65508 -12.48768 -12.32654 -11.94693 -11.84878 -11.84670 -11.82045 -11.64442 -10.91896 -10.44606 -9.97538 -8.38467 -6.46030 0.01794 0.51790 1.06715 1.36532 1.40056 1.50814 1.88065 1.88637 2.29923 2.67389 2.97694 3.05262 3.42658 4.00422 4.07671 4.08388 4.52024 4.60794 4.70303 4.73883 4.88231 4.89166 4.92558 5.01447 5.06228 5.19062 5.27089 5.27226 5.32718 5.48867 6.10385 6.53987 6.70630 7.09006 7.15852 7.24285 8.75836 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.062213 B = 0.003747 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.955283 B = 7470.009610 C = 7728.908095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.004 4.004 3 C -0.141 4.141 4 C 0.200 3.800 5 N -0.408 5.408 6 O 0.054 5.946 7 C 0.429 3.571 8 N -0.596 5.596 9 C 0.699 3.301 10 O -0.596 6.596 11 N -0.692 5.692 12 C 0.246 3.754 13 C -0.546 4.546 14 H 0.066 0.934 15 C 0.030 3.970 16 N -0.930 5.930 17 Si 0.933 3.067 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.256 1.256 21 N -0.513 5.513 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.100 0.900 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.454 0.546 30 H 0.416 0.584 31 H 0.022 0.978 32 H 0.021 0.979 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.511 11.976 17.878 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 C -0.199 4.199 4 C -0.074 4.074 5 N -0.127 5.127 6 O 0.008 5.992 7 C 0.119 3.881 8 N -0.261 5.261 9 C 0.397 3.603 10 O -0.473 6.473 11 N -0.346 5.346 12 C 0.123 3.877 13 C -0.584 4.584 14 H 0.084 0.916 15 C -0.171 4.171 16 N -0.569 5.569 17 Si 0.757 3.243 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.180 1.180 21 N -0.257 5.257 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.119 0.881 25 H 0.138 0.862 26 H 0.119 0.881 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.299 0.701 30 H 0.253 0.747 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.282 13.075 17.080 23.427 hybrid contribution 0.615 -0.847 -0.738 1.281 sum -8.667 12.228 16.342 22.174 Atomic orbital electron populations 1.21850 0.91797 1.02539 1.03756 1.19876 0.97208 0.95770 0.89560 1.21848 1.01160 0.93177 1.03758 1.26326 0.94289 0.91451 0.95326 1.74629 1.20218 1.14609 1.03264 1.85629 1.49199 1.29919 1.34406 1.24019 0.90964 0.88105 0.85017 1.41247 1.50796 1.26873 1.07177 1.15981 0.80674 0.82822 0.80784 1.91019 1.51871 1.46464 1.57910 1.45050 1.51650 1.28271 1.09584 1.19203 0.96479 0.96032 0.76009 1.21222 1.31884 1.11364 0.93939 0.91639 1.25524 0.94659 0.95764 1.01178 1.69964 1.38634 1.27072 1.21184 0.85924 0.80184 0.79106 0.79121 1.19059 1.20190 1.18012 1.72264 1.23021 1.17665 1.12777 0.93124 0.92807 0.88116 0.86236 0.88113 0.92822 0.93125 0.70125 0.74687 0.95989 0.96115 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.18 71.98 0.66 -1.36 16 2 C 0.00 -0.07 3.39 -11.54 -0.04 -0.11 16 3 C -0.14 -2.02 9.17 71.98 0.66 -1.36 16 4 C 0.20 5.25 6.71 138.50 0.93 6.18 16 5 N -0.41 -12.98 12.15 -59.00 -0.72 -13.69 16 6 O 0.05 1.93 9.69 92.22 0.89 2.82 16 7 C 0.43 13.04 8.99 179.12 1.61 14.65 16 8 N -0.60 -15.94 5.37 -438.70 -2.35 -18.30 16 9 C 0.70 24.58 8.52 179.06 1.53 26.11 16 10 O -0.60 -26.25 15.15 16.73 0.25 -26.00 16 11 N -0.69 -24.59 5.55 -482.31 -2.68 -27.27 16 12 C 0.25 11.10 4.50 85.63 0.38 11.48 16 13 C -0.55 -28.15 9.83 25.60 0.25 -27.90 16 14 H 0.07 3.52 7.84 -2.91 -0.02 3.49 16 15 C 0.03 1.59 5.47 84.66 0.46 2.05 16 16 N -0.93 -53.61 13.96 21.45 0.30 -53.31 16 17 Si 0.93 42.11 27.47 68.60 1.88 44.00 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.26 -11.35 6.54 99.48 0.65 -10.70 16 21 N -0.51 -14.02 11.59 -311.88 -3.61 -17.63 16 22 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.45 8.22 8.83 -92.71 -0.82 7.40 16 30 H 0.42 12.09 8.34 -92.71 -0.77 11.31 16 31 H 0.02 1.05 7.20 -2.38 -0.02 1.03 16 32 H 0.02 0.97 7.57 -2.39 -0.02 0.96 16 33 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -68.00 292.52 -0.08 -68.08 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -0.49 Total: 11.54 kcal Atomic # 6 Polarization: 23.30 SS G_CDS: 6.45 Total: 29.75 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -9.06 Total: -130.20 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: 1.15 Total: -23.18 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.88 Total: 44.00 kcal Total: -68.00 -0.08 -68.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670765879.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.297 kcal (2) G-P(sol) polarization free energy of solvation -68.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds