Wall clock time and date at job start Sun Mar 29 2020 23:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30646 * 128.63942 * 2 1 4 4 O 1.20833 * 109.61871 * 180.02562 * 3 2 1 5 5 N 1.20901 * 115.90792 * 359.68660 * 4 3 2 6 6 C 1.31601 * 109.17883 * 0.50627 * 5 4 3 7 7 C 1.48278 * 128.70916 * 179.82313 * 6 5 4 8 8 O 1.21502 * 119.99652 * 179.67150 * 7 6 5 9 9 N 1.34770 * 120.00487 * 359.67331 * 7 6 5 10 10 C 1.46496 * 120.00396 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47310 * 179.72170 * 10 9 7 12 12 N 1.46506 * 109.47182 * 180.02562 * 11 10 9 13 13 C 1.46500 * 119.99832 * 89.99685 * 12 11 10 14 14 C 1.36935 * 119.99847 * 270.00051 * 12 11 10 15 15 H 1.08004 * 120.00046 * 23.04860 * 14 12 11 16 16 C 1.38806 * 120.00098 * 203.04220 * 14 12 11 17 17 N 1.31623 * 120.00041 * 12.94004 * 16 14 12 18 18 Si 1.86795 * 120.00479 * 192.93923 * 16 14 12 19 19 H 1.48505 * 109.47037 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47574 * 119.99981 * 18 16 14 21 21 H 1.48500 * 109.47417 * 240.00218 * 18 16 14 22 22 H 1.08998 * 109.47295 * 269.97513 * 1 2 3 23 23 H 1.08999 * 109.47136 * 29.98005 * 1 2 3 24 24 H 1.09003 * 109.46907 * 149.97710 * 1 2 3 25 25 H 0.97005 * 119.99921 * 359.71920 * 9 7 6 26 26 H 1.08997 * 109.47280 * 299.72536 * 10 9 7 27 27 H 1.09003 * 109.46784 * 59.72319 * 10 9 7 28 28 H 1.09002 * 109.47197 * 299.99654 * 11 10 9 29 29 H 1.08996 * 109.47253 * 59.99994 * 11 10 9 30 30 H 1.09000 * 109.46719 * 95.12726 * 13 12 11 31 31 H 1.09002 * 109.47230 * 215.12042 * 13 12 11 32 32 H 1.08996 * 109.47672 * 335.12681 * 13 12 11 33 33 H 0.97001 * 120.00310 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6267 -0.0005 5 7 3.6102 -0.5736 0.0051 6 6 2.4280 -1.1519 -0.0006 7 6 2.1035 -2.5988 -0.0008 8 8 0.9438 -2.9612 -0.0005 9 7 3.0948 -3.5118 -0.0012 10 6 2.7742 -4.9412 -0.0020 11 6 4.0701 -5.7546 -0.0094 12 7 3.7494 -7.1841 -0.0107 13 6 3.5833 -7.8963 -1.2801 14 6 3.6048 -7.8545 1.1745 15 1 3.3556 -7.3123 2.0747 16 6 3.7785 -9.2309 1.2191 17 7 4.3248 -9.8587 0.1993 18 14 3.2369 -10.1925 2.7262 19 1 2.6561 -9.2603 3.7257 20 1 2.2146 -11.1952 2.3327 21 1 4.4087 -10.8864 3.3181 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 4.0207 -3.2224 -0.0055 26 1 2.1975 -5.1847 0.8903 27 1 2.1891 -5.1818 -0.8896 28 1 4.6468 -5.5112 -0.9017 29 1 4.6552 -5.5140 0.8782 30 1 4.5237 -8.3747 -1.5540 31 1 2.8078 -8.6547 -1.1725 32 1 3.2950 -7.1897 -2.0583 33 1 4.4465 -10.8205 0.2306 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713479461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:06 Heat of formation + Delta-G solvation = 99.783202 kcal Electronic energy + Delta-G solvation = -18187.438463 eV Core-core repulsion = 15061.633072 eV Total energy + Delta-G solvation = -3125.805391 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.09104 -39.66607 -36.25227 -35.42954 -34.91906 -34.28726 -31.43718 -29.80538 -28.44691 -26.04091 -25.70943 -23.30968 -22.70343 -20.88630 -20.65104 -19.26714 -18.53156 -17.24771 -16.71237 -15.97288 -15.34029 -14.85011 -14.47411 -14.12170 -13.90126 -13.73628 -13.59856 -13.27846 -12.62954 -12.44932 -12.20978 -12.09666 -11.38888 -11.26153 -10.99511 -10.91458 -10.68023 -10.55815 -10.48145 -10.34132 -9.99817 -9.94316 -8.99378 -8.62272 -6.86462 -5.79428 -3.28207 0.58300 1.08090 2.59465 2.88373 3.15674 3.25946 3.35025 3.42647 3.44715 3.77051 4.44970 4.46741 4.68285 4.89779 5.17134 5.31209 5.33289 5.53180 5.67943 5.71284 5.76658 6.13551 6.31714 6.52271 6.67070 6.74016 7.30449 7.36761 7.66190 7.75405 7.96489 8.22251 8.31782 9.15475 9.77448 10.25196 11.25440 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.039863 B = 0.003865 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.233692 B = 7242.725056 C = 7413.660614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.060 3.940 3 N -0.361 5.361 4 O 0.340 5.660 5 N -0.321 5.321 6 C -0.038 4.038 7 C 0.598 3.402 8 O -0.515 6.515 9 N -0.699 5.699 10 C 0.093 3.907 11 C 0.142 3.858 12 N -0.596 5.596 13 C 0.160 3.840 14 C -0.263 4.263 15 H 0.070 0.930 16 C 0.005 3.995 17 N -0.905 5.905 18 Si 0.906 3.094 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.289 1.289 22 H 0.094 0.906 23 H 0.086 0.914 24 H 0.103 0.897 25 H 0.405 0.595 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.043 0.957 32 H -0.001 1.001 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.847 18.119 -1.801 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 N -0.087 5.087 4 O 0.115 5.885 5 N -0.042 5.042 6 C -0.204 4.204 7 C 0.379 3.621 8 O -0.389 6.389 9 N -0.350 5.350 10 C -0.033 4.033 11 C 0.013 3.987 12 N -0.318 5.318 13 C 0.016 3.984 14 C -0.392 4.392 15 H 0.088 0.912 16 C -0.193 4.193 17 N -0.550 5.550 18 Si 0.736 3.264 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.216 1.216 22 H 0.112 0.888 23 H 0.105 0.895 24 H 0.121 0.879 25 H 0.239 0.761 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.018 0.982 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.685 18.268 -1.824 18.725 hybrid contribution -0.440 -0.996 0.774 1.335 sum -4.125 17.272 -1.051 17.789 Atomic orbital electron populations 1.20350 0.82913 1.05252 1.04791 1.26253 1.00405 0.85198 0.98723 1.75049 0.91211 1.24075 1.18368 1.85054 1.23292 1.16703 1.63442 1.75368 1.23094 0.92772 1.12986 1.26270 0.87971 0.98787 1.07378 1.16506 0.85981 0.81292 0.78284 1.90824 1.18892 1.79378 1.49845 1.45998 1.09098 1.07712 1.72238 1.22669 1.02205 0.75706 1.02681 1.20843 0.92098 0.85762 0.99954 1.43798 1.81698 1.02600 1.03752 1.20856 1.00301 0.93208 0.84073 1.19237 1.41999 0.90282 0.87672 0.91209 1.25035 0.99164 0.97488 0.97658 1.70081 1.45596 1.08389 1.30894 0.86166 0.77989 0.80004 0.82261 1.20225 1.21489 1.21630 0.88801 0.89515 0.87854 0.76066 0.90816 0.91502 0.93846 0.92688 0.94773 0.93847 0.98204 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.22 36.01 0.37 -0.25 16 2 C 0.06 0.67 7.79 -79.33 -0.62 0.05 16 3 N -0.36 -4.04 12.22 33.75 0.41 -3.63 16 4 O 0.34 3.80 11.65 27.27 0.32 4.12 16 5 N -0.32 -3.85 12.13 33.49 0.41 -3.44 16 6 C -0.04 -0.48 7.56 -80.07 -0.61 -1.09 16 7 C 0.60 8.81 7.85 -12.13 -0.10 8.71 16 8 O -0.52 -8.81 15.96 5.36 0.09 -8.73 16 9 N -0.70 -10.03 5.55 -61.11 -0.34 -10.37 16 10 C 0.09 1.60 6.00 -4.04 -0.02 1.58 16 11 C 0.14 2.72 5.76 -4.04 -0.02 2.70 16 12 N -0.60 -14.56 2.92 -181.12 -0.53 -15.09 16 13 C 0.16 3.85 8.98 59.85 0.54 4.39 16 14 C -0.26 -7.07 9.65 -15.06 -0.15 -7.21 16 15 H 0.07 1.84 7.86 -52.48 -0.41 1.43 16 16 C 0.01 0.15 5.10 -17.43 -0.09 0.06 16 17 N -0.91 -26.00 10.71 55.49 0.59 -25.41 16 18 Si 0.91 21.58 29.57 -169.99 -5.03 16.55 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.10 0.93 7.31 -51.93 -0.38 0.55 16 25 H 0.40 4.98 8.33 -40.82 -0.34 4.64 16 26 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 29 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 30 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 31 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 32 H 0.00 -0.01 8.03 -51.93 -0.42 -0.43 16 33 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 294.15 15.07 4.43 4.43 Total: -1.00 -30.15 294.15 -4.32 -34.47 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -3.97 Total: -1.83 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -0.70 Total: 8.93 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.54 Total: -57.94 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: 0.40 Total: -4.61 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.15 -4.32 -34.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713479461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.252 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds