Wall clock time and date at job start Sun Mar 29 2020 23:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30646 * 128.63942 * 2 1 4 4 O 1.20833 * 109.61871 * 180.02562 * 3 2 1 5 5 N 1.20901 * 115.90792 * 359.68660 * 4 3 2 6 6 C 1.31601 * 109.17883 * 0.50627 * 5 4 3 7 7 C 1.48278 * 128.70916 * 179.82313 * 6 5 4 8 8 O 1.21502 * 119.99652 * 179.67150 * 7 6 5 9 9 N 1.34770 * 120.00487 * 359.67331 * 7 6 5 10 10 C 1.46496 * 120.00396 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47310 * 179.72170 * 10 9 7 12 12 N 1.46506 * 109.47182 * 180.02562 * 11 10 9 13 13 C 1.46500 * 119.99832 * 89.99685 * 12 11 10 14 14 C 1.36935 * 119.99847 * 270.00051 * 12 11 10 15 15 H 1.08004 * 120.00046 * 23.04860 * 14 12 11 16 16 C 1.38806 * 120.00098 * 203.04220 * 14 12 11 17 17 N 1.31623 * 120.00041 * 12.94004 * 16 14 12 18 18 Si 1.86795 * 120.00479 * 192.93923 * 16 14 12 19 19 H 1.48505 * 109.47037 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47574 * 119.99981 * 18 16 14 21 21 H 1.48500 * 109.47417 * 240.00218 * 18 16 14 22 22 H 1.08998 * 109.47295 * 269.97513 * 1 2 3 23 23 H 1.08999 * 109.47136 * 29.98005 * 1 2 3 24 24 H 1.09003 * 109.46907 * 149.97710 * 1 2 3 25 25 H 0.97005 * 119.99921 * 359.71920 * 9 7 6 26 26 H 1.08997 * 109.47280 * 299.72536 * 10 9 7 27 27 H 1.09003 * 109.46784 * 59.72319 * 10 9 7 28 28 H 1.09002 * 109.47197 * 299.99654 * 11 10 9 29 29 H 1.08996 * 109.47253 * 59.99994 * 11 10 9 30 30 H 1.09000 * 109.46719 * 95.12726 * 13 12 11 31 31 H 1.09002 * 109.47230 * 215.12042 * 13 12 11 32 32 H 1.08996 * 109.47672 * 335.12681 * 13 12 11 33 33 H 0.97001 * 120.00310 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6267 -0.0005 5 7 3.6102 -0.5736 0.0051 6 6 2.4280 -1.1519 -0.0006 7 6 2.1035 -2.5988 -0.0008 8 8 0.9438 -2.9612 -0.0005 9 7 3.0948 -3.5118 -0.0012 10 6 2.7742 -4.9412 -0.0020 11 6 4.0701 -5.7546 -0.0094 12 7 3.7494 -7.1841 -0.0107 13 6 3.5833 -7.8963 -1.2801 14 6 3.6048 -7.8545 1.1745 15 1 3.3556 -7.3123 2.0747 16 6 3.7785 -9.2309 1.2191 17 7 4.3248 -9.8587 0.1993 18 14 3.2369 -10.1925 2.7262 19 1 2.6561 -9.2603 3.7257 20 1 2.2146 -11.1952 2.3327 21 1 4.4087 -10.8864 3.3181 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 4.0207 -3.2224 -0.0055 26 1 2.1975 -5.1847 0.8903 27 1 2.1891 -5.1818 -0.8896 28 1 4.6468 -5.5112 -0.9017 29 1 4.6552 -5.5140 0.8782 30 1 4.5237 -8.3747 -1.5540 31 1 2.8078 -8.6547 -1.1725 32 1 3.2950 -7.1897 -2.0583 33 1 4.4465 -10.8205 0.2306 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713479461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:05 Heat of formation + Delta-G solvation = 78.857527 kcal Electronic energy + Delta-G solvation = -18188.345869 eV Core-core repulsion = 15061.633072 eV Total energy + Delta-G solvation = -3126.712796 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.01334 -40.89770 -37.93335 -36.38130 -36.00815 -35.62959 -33.32148 -30.72221 -29.86645 -27.94444 -26.99923 -24.86446 -23.65190 -22.45714 -21.94538 -20.18701 -19.63875 -18.75194 -18.19763 -17.34821 -16.70051 -16.62918 -15.60937 -15.52815 -15.15823 -15.10991 -14.48223 -14.40785 -14.32515 -14.19358 -13.09118 -13.04787 -12.94618 -12.81240 -12.72126 -12.51045 -12.32435 -12.16678 -11.99009 -11.82022 -11.62656 -11.41757 -10.68166 -10.30032 -8.85617 -7.85789 -5.36498 -0.41651 0.20223 1.44421 1.47534 1.49618 1.58499 1.73993 2.24524 2.34270 2.50208 2.76524 3.28837 3.54555 3.63527 3.80796 4.05705 4.18019 4.21966 4.58646 4.62835 4.69850 4.80290 4.98078 5.00019 5.09370 5.21074 5.37168 5.62347 5.70265 6.18800 6.29887 6.80302 7.12011 7.30534 7.81625 8.24335 9.17598 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.039863 B = 0.003865 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.233692 B = 7242.725056 C = 7413.660614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.067 3.933 3 N -0.363 5.363 4 O 0.350 5.650 5 N -0.318 5.318 6 C -0.055 4.055 7 C 0.603 3.397 8 O -0.540 6.540 9 N -0.692 5.692 10 C 0.115 3.885 11 C 0.144 3.856 12 N -0.615 5.615 13 C 0.173 3.827 14 C -0.268 4.268 15 H 0.072 0.928 16 C -0.049 4.049 17 N -0.936 5.936 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.291 1.291 21 H -0.290 1.290 22 H 0.107 0.893 23 H 0.109 0.891 24 H 0.095 0.905 25 H 0.416 0.584 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.010 0.990 31 H 0.015 0.985 32 H 0.034 0.966 33 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.197 19.870 -1.411 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 N -0.090 5.090 4 O 0.123 5.877 5 N -0.037 5.037 6 C -0.220 4.220 7 C 0.385 3.615 8 O -0.416 6.416 9 N -0.344 5.344 10 C -0.011 4.011 11 C 0.017 3.983 12 N -0.338 5.338 13 C 0.028 3.972 14 C -0.398 4.398 15 H 0.090 0.910 16 C -0.244 4.244 17 N -0.582 5.582 18 Si 0.796 3.204 19 H -0.192 1.192 20 H -0.218 1.218 21 H -0.217 1.217 22 H 0.125 0.875 23 H 0.128 0.872 24 H 0.114 0.886 25 H 0.253 0.747 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.028 0.972 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.016 20.055 -1.429 20.503 hybrid contribution -0.318 -1.401 0.628 1.568 sum -4.334 18.655 -0.802 19.168 Atomic orbital electron populations 1.20508 0.81049 1.05963 1.05835 1.26662 1.01450 0.84337 0.97414 1.75081 0.91079 1.23942 1.18907 1.85054 1.23485 1.16241 1.62959 1.75353 1.22897 0.93094 1.12353 1.25953 0.88823 0.97964 1.09220 1.16610 0.85442 0.82042 0.77357 1.90813 1.19899 1.80051 1.50885 1.45763 1.09851 1.06517 1.72300 1.22105 1.00507 0.77138 1.01391 1.20953 0.93031 0.83163 1.01169 1.44019 1.82099 1.04604 1.03071 1.20612 0.98165 0.93347 0.85071 1.19550 1.40887 0.90739 0.88631 0.90987 1.25773 0.99838 0.98512 1.00306 1.70229 1.47119 1.08211 1.32680 0.85205 0.77246 0.78556 0.79429 1.19152 1.21828 1.21726 0.87469 0.87227 0.88648 0.74693 0.92811 0.92226 0.91703 0.92290 0.97171 0.96610 0.94793 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.22 71.24 0.73 -0.35 16 2 C 0.07 1.35 7.79 45.18 0.35 1.70 16 3 N -0.36 -7.33 12.22 -51.82 -0.63 -7.97 16 4 O 0.35 7.11 11.65 140.86 1.64 8.75 16 5 N -0.32 -7.01 12.13 -52.07 -0.63 -7.64 16 6 C -0.05 -1.29 7.56 44.29 0.33 -0.95 16 7 C 0.60 16.93 7.85 86.92 0.68 17.62 16 8 O -0.54 -17.98 15.96 -3.72 -0.06 -18.04 16 9 N -0.69 -18.77 5.55 -465.57 -2.59 -21.36 16 10 C 0.11 3.83 6.00 86.38 0.52 4.35 16 11 C 0.14 5.30 5.76 86.38 0.50 5.80 16 12 N -0.61 -29.74 2.92 -726.93 -2.12 -31.87 16 13 C 0.17 8.32 8.98 127.77 1.15 9.47 16 14 C -0.27 -14.37 9.65 84.03 0.81 -13.56 16 15 H 0.07 3.75 7.86 -2.91 -0.02 3.73 16 16 C -0.05 -2.70 5.10 84.86 0.43 -2.26 16 17 N -0.94 -54.58 10.71 21.65 0.23 -54.35 16 18 Si 0.97 44.52 29.57 68.60 2.03 46.55 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 22 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.09 1.56 7.31 -2.39 -0.02 1.55 16 25 H 0.42 9.42 8.33 -92.70 -0.77 8.64 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 2.13 8.07 -2.39 -0.02 2.11 16 29 H 0.06 2.13 8.04 -2.39 -0.02 2.11 16 30 H 0.01 0.53 7.34 -2.39 -0.02 0.51 16 31 H 0.02 0.81 7.34 -2.39 -0.02 0.79 16 32 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 33 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -63.72 294.15 3.74 -59.98 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: 0.37 Total: 4.14 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 5.50 Total: 21.80 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -5.74 Total: -123.19 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 1.58 Total: -9.29 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -63.72 3.74 -59.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713479461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.840 kcal (2) G-P(sol) polarization free energy of solvation -63.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds