Wall clock time and date at job start Sun Mar 29 2020 23:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 110.45590 * 2 1 4 4 O 1.20825 * 120.00108 * 122.60784 * 3 2 1 5 5 O 1.34232 * 119.99838 * 302.60132 * 3 2 1 6 6 C 1.45200 * 116.99981 * 180.02562 * 5 3 2 7 7 H 1.09004 * 109.47066 * 330.00146 * 6 5 3 8 8 C 1.50700 * 109.47412 * 210.00583 * 6 5 3 9 9 H 1.07997 * 119.99556 * 354.37309 * 8 6 5 10 10 C 1.37872 * 120.00445 * 174.38244 * 8 6 5 11 11 N 1.31514 * 119.99849 * 1.06086 * 10 8 6 12 12 Si 1.86802 * 120.00337 * 180.79021 * 10 8 6 13 13 H 1.48494 * 109.46912 * 265.27718 * 12 10 8 14 14 H 1.48498 * 109.46699 * 25.28127 * 12 10 8 15 15 H 1.48501 * 109.46846 * 145.27591 * 12 10 8 16 16 C 1.53003 * 109.47138 * 90.00068 * 6 5 3 17 17 C 1.52994 * 117.49469 * 2.26715 * 16 6 5 18 18 C 1.52995 * 117.50004 * 293.60625 * 16 6 5 19 19 C 1.54508 * 110.51048 * 122.60168 * 2 1 3 20 20 C 1.54485 * 104.05790 * 118.78263 * 19 2 1 21 21 O 1.44422 * 104.80703 * 23.98099 * 20 19 2 22 22 C 1.44427 * 105.27077 * 319.48733 * 21 20 19 23 23 H 1.09006 * 109.47451 * 59.29963 * 1 2 3 24 24 H 1.09000 * 109.47146 * 179.30165 * 1 2 3 25 25 H 1.09004 * 109.47128 * 299.30412 * 1 2 3 26 26 H 0.97002 * 120.00417 * 179.72674 * 11 10 8 27 27 H 1.08996 * 115.54674 * 147.92933 * 16 6 5 28 28 H 1.09000 * 117.50458 * 359.97438 * 17 16 6 29 29 H 1.09006 * 117.49942 * 145.01794 * 17 16 6 30 30 H 1.08994 * 117.50005 * 214.97968 * 18 16 6 31 31 H 1.09006 * 117.50030 * 359.97309 * 18 16 6 32 32 H 1.09004 * 110.51342 * 237.42404 * 19 2 1 33 33 H 1.08998 * 110.51257 * 0.13984 * 19 2 1 34 34 H 1.09001 * 110.36723 * 142.81076 * 20 19 2 35 35 H 1.08994 * 110.36997 * 265.14147 * 20 19 2 36 36 H 1.09000 * 110.37194 * 281.67714 * 22 21 20 37 37 H 1.09003 * 110.37172 * 159.34635 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7961 1.7810 0.8814 5 8 1.7044 2.2597 -0.9793 6 6 2.2499 3.6038 -0.9157 7 1 2.4136 3.8806 0.1259 8 6 1.2801 4.5701 -1.5456 9 1 0.3902 4.2008 -2.0336 10 6 1.5289 5.9253 -1.4992 11 7 2.6230 6.3737 -0.9235 12 14 0.3157 7.1244 -2.2608 13 1 0.7420 7.4469 -3.6461 14 1 -1.0359 6.5099 -2.2890 15 1 0.2766 8.3694 -1.4523 16 6 3.5798 3.6508 -1.6708 17 6 4.0439 2.3684 -2.3643 18 6 4.7486 2.8499 -1.0936 19 6 2.0713 -0.7797 1.2191 20 6 2.8786 -1.9393 0.5945 21 8 3.2435 -1.4684 -0.7211 22 6 2.0742 -0.7807 -1.2168 23 1 -0.3634 0.5247 -0.8837 24 1 -0.3633 -1.0276 -0.0125 25 1 -0.3633 0.5030 0.8962 26 1 2.8000 7.3270 -0.8943 27 1 3.8106 4.5982 -2.1578 28 1 3.4022 1.4912 -2.2822 29 1 4.5806 2.4722 -3.3074 30 1 5.7485 3.2702 -1.2011 31 1 4.5704 2.2899 -0.1755 32 1 2.7200 -0.1439 1.8218 33 1 1.2490 -1.1673 1.8205 34 1 3.7714 -2.1419 1.1862 35 1 2.2611 -2.8343 0.5196 36 1 1.3332 -1.4980 -1.5697 37 1 2.3490 -0.0932 -2.0168 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346706607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:14 Heat of formation + Delta-G solvation = -112.367459 kcal Electronic energy + Delta-G solvation = -20110.655160 eV Core-core repulsion = 17046.897819 eV Total energy + Delta-G solvation = -3063.757341 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.54053 -38.71824 -36.43996 -34.74449 -33.60203 -32.80636 -29.80814 -27.89815 -26.35014 -23.93056 -23.09373 -22.25346 -21.43659 -19.65409 -18.80085 -17.14039 -16.60845 -16.38891 -15.86807 -15.33629 -15.30004 -14.77191 -14.31857 -13.89472 -13.15082 -12.96729 -12.78380 -12.66059 -12.26706 -11.71059 -11.64771 -11.43175 -11.32077 -11.05448 -11.02216 -10.91115 -10.61885 -10.51780 -10.30713 -10.03060 -9.93416 -9.49292 -9.46951 -9.12817 -8.53972 -8.46223 -6.19946 -4.27362 2.90262 3.23431 3.29055 3.32302 3.52685 3.99206 4.31041 4.40636 4.81738 4.91658 4.97172 5.09200 5.12316 5.23394 5.38308 5.53815 5.63010 5.68983 5.71360 5.87332 5.90198 5.97264 6.10264 6.13328 6.15597 6.23877 6.48529 6.71918 6.75884 6.89356 7.03997 7.19931 7.51491 7.57366 7.81715 8.10444 8.59732 8.86853 9.37612 10.87887 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.030407 B = 0.006714 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.620480 B = 4169.428788 C = 4571.318711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 C 0.467 3.533 4 O -0.511 6.511 5 O -0.348 6.348 6 C 0.247 3.753 7 H 0.055 0.945 8 C -0.520 4.520 9 H 0.070 0.930 10 C 0.064 3.936 11 N -0.883 5.883 12 Si 0.908 3.092 13 H -0.278 1.278 14 H -0.271 1.271 15 H -0.284 1.284 16 C -0.114 4.114 17 C -0.195 4.195 18 C -0.204 4.204 19 C -0.149 4.149 20 C 0.046 3.954 21 O -0.370 6.370 22 C 0.058 3.942 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.266 0.734 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.491 -13.388 1.110 13.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 C 0.309 3.691 4 O -0.400 6.400 5 O -0.264 6.264 6 C 0.195 3.805 7 H 0.072 0.928 8 C -0.558 4.558 9 H 0.088 0.912 10 C -0.139 4.139 11 N -0.520 5.520 12 Si 0.735 3.265 13 H -0.204 1.204 14 H -0.196 1.196 15 H -0.210 1.210 16 C -0.132 4.132 17 C -0.232 4.232 18 C -0.241 4.241 19 C -0.186 4.186 20 C -0.030 4.030 21 O -0.288 6.288 22 C -0.019 4.019 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.137 0.863 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.963 -13.071 1.284 13.280 hybrid contribution -0.540 0.878 -0.201 1.050 sum -2.502 -12.193 1.083 12.494 Atomic orbital electron populations 1.21785 0.90883 1.02518 1.04010 1.21835 0.98341 0.91227 0.97925 1.22849 0.78188 0.87817 0.80228 1.90542 1.34491 1.77564 1.37399 1.86471 1.67111 1.26350 1.46485 1.20164 0.89686 0.72905 0.97757 0.92766 1.20932 1.07408 0.89860 1.37568 0.91178 1.24919 0.95849 0.97926 0.95185 1.70011 1.24676 1.14721 1.42606 0.86311 0.81090 0.80043 0.79024 1.20406 1.19553 1.20960 1.22988 0.94295 0.94838 1.01109 1.22846 1.04508 1.00115 0.95723 1.23127 0.97396 1.06158 0.97440 1.23145 1.01079 0.97279 0.97126 1.23420 0.99520 0.95807 0.84298 1.89169 1.35089 1.73632 1.30949 1.23556 0.88094 0.94817 0.95428 0.90457 0.91473 0.91635 0.92412 0.86312 0.89902 0.90347 0.90525 0.88594 0.88100 0.89773 0.88953 0.92290 0.90909 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.22 37.16 0.31 -1.38 16 2 C -0.09 -1.39 0.99 -154.09 -0.15 -1.54 16 3 C 0.47 9.60 5.35 36.01 0.19 9.79 16 4 O -0.51 -11.82 12.22 -18.75 -0.23 -12.05 16 5 O -0.35 -8.01 8.30 -39.26 -0.33 -8.33 16 6 C 0.25 6.50 2.29 -27.88 -0.06 6.44 16 7 H 0.05 1.61 7.16 -51.93 -0.37 1.24 16 8 C -0.52 -14.31 8.82 -34.44 -0.30 -14.61 16 9 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 10 C 0.06 1.75 5.18 -17.82 -0.09 1.66 16 11 N -0.88 -25.00 12.14 55.43 0.67 -24.32 16 12 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C -0.11 -2.82 5.27 -90.62 -0.48 -3.29 16 17 C -0.19 -4.16 9.72 -26.70 -0.26 -4.42 16 18 C -0.20 -4.59 9.88 -26.70 -0.26 -4.86 16 19 C -0.15 -1.95 6.32 -25.16 -0.16 -2.11 16 20 C 0.05 0.55 7.63 37.94 0.29 0.84 16 21 O -0.37 -5.66 11.65 -35.23 -0.41 -6.07 16 22 C 0.06 0.82 6.73 37.93 0.26 1.08 16 23 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 24 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.12 3.19 7.05 -51.93 -0.37 2.82 16 28 H 0.08 1.72 4.79 -51.93 -0.25 1.47 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.10 2.26 5.63 -51.93 -0.29 1.97 16 32 H 0.10 1.56 6.51 -51.93 -0.34 1.22 16 33 H 0.08 0.87 7.73 -51.93 -0.40 0.47 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.81 7.86 -51.93 -0.41 0.40 16 37 H 0.10 1.61 5.97 -51.93 -0.31 1.30 16 LS Contribution 297.33 15.07 4.48 4.48 Total: -1.00 -30.41 297.33 -6.80 -37.22 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.24 Total: 5.70 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -0.73 Total: -12.42 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.67 Total: -24.32 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.97 Total: -26.45 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.41 -6.80 -37.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.152 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds