Wall clock time and date at job start Sun Mar 29 2020 23:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47256 * 2 1 4 4 C 1.53004 * 115.55775 * 34.31093 * 3 2 1 5 5 C 1.52997 * 117.49778 * 248.62255 * 3 2 1 6 6 C 1.52998 * 117.49906 * 179.97438 * 3 2 1 7 7 H 1.08998 * 117.51818 * 214.97399 * 6 3 2 8 8 C 1.50703 * 117.50001 * 0.02562 * 6 3 2 9 9 O 1.21284 * 119.99546 * 0.02562 * 8 6 3 10 10 N 1.34775 * 120.00072 * 180.02562 * 8 6 3 11 11 C 1.46498 * 119.99630 * 179.97438 * 10 8 6 12 12 C 1.50700 * 109.46706 * 179.97438 * 11 10 8 13 13 O 1.21293 * 120.00282 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00075 * 179.97438 * 12 11 10 15 15 C 1.37104 * 120.00173 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99666 * 359.97438 * 15 14 12 17 17 C 1.38945 * 120.00001 * 180.27893 * 15 14 12 18 18 N 1.31414 * 119.99893 * 359.72318 * 17 15 14 19 19 Si 1.86801 * 119.99957 * 179.72309 * 17 15 14 20 20 H 1.48496 * 109.47031 * 59.99793 * 19 17 15 21 21 H 1.48504 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47038 * 299.99770 * 19 17 15 23 23 H 1.08997 * 109.47079 * 300.00413 * 1 2 3 24 24 H 1.09001 * 109.46861 * 59.99763 * 1 2 3 25 25 H 1.08995 * 109.46971 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47290 * 240.00052 * 2 1 3 27 27 H 1.08998 * 109.47071 * 119.99769 * 2 1 3 28 28 H 1.09003 * 109.46426 * 205.68960 * 4 3 2 29 29 H 1.08994 * 109.47214 * 325.68749 * 4 3 2 30 30 H 1.08996 * 109.46961 * 85.69122 * 4 3 2 31 31 H 1.08998 * 117.49684 * 145.02381 * 5 3 2 32 32 H 1.08994 * 117.52085 * 359.97438 * 5 3 2 33 33 H 0.97002 * 120.00040 * 359.97438 * 10 8 6 34 34 H 1.08994 * 109.47318 * 60.00239 * 11 10 8 35 35 H 1.08998 * 109.47542 * 299.99766 * 11 10 8 36 36 H 0.97000 * 120.00140 * 0.02562 * 14 12 11 37 37 H 0.97004 * 119.99542 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 1.1852 2.4450 0.7781 5 6 2.7419 1.9436 -1.2638 6 6 3.5550 1.6562 0.0006 7 1 3.9429 2.5109 0.5547 8 6 4.4308 0.4297 0.0006 9 8 3.9282 -0.6741 -0.0004 10 7 5.7722 0.5595 0.0016 11 6 6.6234 -0.6329 0.0021 12 6 8.0716 -0.2161 0.0026 13 8 8.3640 0.9611 0.0021 14 7 9.0421 -1.1514 0.0037 15 6 10.3596 -0.7722 0.0047 16 1 10.6199 0.2760 0.0042 17 6 11.3600 -1.7365 -0.0001 18 7 11.0433 -3.0119 0.0000 19 14 13.1552 -1.2198 -0.0065 20 1 13.4419 -0.4113 1.2056 21 1 14.0180 -2.4285 -0.0104 22 1 13.4326 -0.4091 -1.2194 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.3352 3.4444 0.3696 29 1 0.1339 2.1707 0.6908 30 1 1.4776 2.4339 1.8280 31 1 2.5948 2.9875 -1.5408 32 1 2.8409 1.2459 -2.0952 33 1 6.1741 1.4423 0.0020 34 1 6.4171 -1.2270 -0.8880 35 1 6.4157 -1.2272 0.8919 36 1 8.8083 -2.0928 0.0037 37 1 11.7418 -3.6850 -0.0030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344121571.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:45:28 Heat of formation + Delta-G solvation = -62.912562 kcal Electronic energy + Delta-G solvation = -18390.321749 eV Core-core repulsion = 15361.001684 eV Total energy + Delta-G solvation = -3029.320065 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18966 -38.46280 -37.22105 -34.42310 -33.65726 -32.23406 -31.38201 -28.62576 -27.74171 -24.87002 -23.82074 -23.27845 -20.10819 -19.64466 -18.83942 -18.03803 -17.11089 -15.65112 -15.56021 -15.22192 -14.78581 -14.69407 -14.26645 -14.17449 -13.76326 -13.63030 -13.27910 -13.02965 -12.26058 -12.19200 -12.01713 -11.91545 -11.76679 -11.63469 -11.20977 -11.11009 -10.95632 -10.51239 -10.31870 -10.12929 -9.85097 -9.63294 -9.33888 -8.75398 -8.63705 -8.10798 -6.52025 -3.94200 2.68221 3.13347 3.20843 3.23355 3.34470 3.72091 3.77261 4.10862 4.53528 4.66572 4.77736 4.88262 4.93532 5.16253 5.18435 5.29403 5.43237 5.51467 5.59757 5.63908 5.67653 5.83627 5.88532 5.95321 5.96559 6.03457 6.07207 6.15092 6.30071 6.54153 6.73308 7.45200 7.85826 7.91351 8.43897 8.50856 9.03866 9.38590 9.86628 10.64822 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.057187 B = 0.003506 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.502512 B = 7983.792336 C = 8323.684702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.076 4.076 3 C -0.090 4.090 4 C -0.123 4.123 5 C -0.147 4.147 6 C -0.185 4.185 7 H 0.122 0.878 8 C 0.540 3.460 9 O -0.545 6.545 10 N -0.704 5.704 11 C 0.110 3.890 12 C 0.428 3.572 13 O -0.597 6.597 14 N -0.549 5.549 15 C -0.306 4.306 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.934 3.066 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.411 0.589 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.396 0.604 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.843 6.649 -0.208 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.113 4.113 3 C -0.091 4.091 4 C -0.180 4.180 5 C -0.185 4.185 6 C -0.207 4.207 7 H 0.140 0.860 8 C 0.326 3.674 9 O -0.424 6.424 10 N -0.358 5.358 11 C -0.018 4.018 12 C 0.213 3.787 13 O -0.484 6.484 14 N -0.184 5.184 15 C -0.436 4.436 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.198 1.198 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.249 0.751 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.230 0.770 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.824 6.440 -0.207 18.016 hybrid contribution 1.243 0.038 0.009 1.243 sum -15.581 6.478 -0.198 16.875 Atomic orbital electron populations 1.21939 0.96702 1.01251 1.01301 1.21087 0.93853 0.92410 1.03996 1.21584 0.90483 0.97622 0.99407 1.21515 0.99807 0.97038 0.99619 1.23204 1.01709 1.02416 0.91141 1.22350 0.93810 0.99113 1.05387 0.86015 1.19610 0.82051 0.89677 0.76081 1.90676 1.73865 1.27304 1.50544 1.45693 1.05286 1.10827 1.73952 1.20937 0.89758 0.87979 1.03137 1.19761 0.86454 0.86868 0.85588 1.90495 1.82997 1.17569 1.57356 1.41793 1.05643 1.08299 1.62628 1.19688 0.80546 0.94934 1.48395 0.87730 1.25326 1.00845 0.94757 0.96754 1.69610 1.34871 0.99789 1.49247 0.85868 0.81082 0.77827 0.79166 1.19764 1.20836 1.19765 0.92653 0.93056 0.92949 0.90919 0.90710 0.92456 0.90963 0.92069 0.87992 0.88302 0.75138 0.89944 0.89905 0.77036 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.92 37.16 0.33 -1.11 16 2 C -0.08 -0.91 4.36 -26.73 -0.12 -1.03 16 3 C -0.09 -0.98 2.47 -154.51 -0.38 -1.36 16 4 C -0.12 -1.04 9.49 37.16 0.35 -0.68 16 5 C -0.15 -1.54 9.53 -26.71 -0.25 -1.80 16 6 C -0.19 -2.26 5.91 -91.75 -0.54 -2.80 16 7 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 8 C 0.54 8.55 7.59 -10.98 -0.08 8.47 16 9 O -0.55 -9.87 13.10 5.55 0.07 -9.80 16 10 N -0.70 -11.93 5.53 -61.47 -0.34 -12.27 16 11 C 0.11 2.05 6.15 -5.19 -0.03 2.01 16 12 C 0.43 9.90 7.85 -10.98 -0.09 9.81 16 13 O -0.60 -15.41 15.24 5.55 0.08 -15.33 16 14 N -0.55 -13.70 5.29 -10.96 -0.06 -13.76 16 15 C -0.31 -8.37 9.68 -14.93 -0.14 -8.51 16 16 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 17 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 18 N -0.90 -23.98 13.05 55.50 0.72 -23.25 16 19 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 H 0.05 0.46 6.45 -51.93 -0.33 0.12 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.99 7.01 -51.93 -0.36 0.63 16 27 H 0.07 1.04 7.26 -51.93 -0.38 0.66 16 28 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 29 H 0.07 0.54 5.58 -51.93 -0.29 0.25 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.86 8.05 -51.93 -0.42 0.44 16 32 H 0.10 1.11 8.05 -51.93 -0.42 0.69 16 33 H 0.41 6.88 7.44 -40.82 -0.30 6.57 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 37 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 310.50 15.07 4.68 4.68 Total: -1.00 -30.26 310.50 -6.20 -36.46 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -5.29 Total: 14.12 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.05 Total: 3.59 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.33 Total: -49.28 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: 0.16 Total: -25.13 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.26 -6.20 -36.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344121571.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.456 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds