Wall clock time and date at job start Sun Mar 29 2020 23:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21341 * 120.00719 * 0.02562 * 14 13 3 16 16 C 1.49457 * 119.99790 * 179.97438 * 14 13 3 17 17 O 1.21354 * 119.99761 * 0.02562 * 16 14 13 18 18 N 1.34773 * 120.00099 * 179.97438 * 16 14 13 19 19 C 1.46497 * 120.00128 * 179.97438 * 18 16 14 20 20 C 1.52999 * 109.47357 * 180.02562 * 19 18 16 21 21 C 1.53002 * 117.49969 * 243.62251 * 20 19 18 22 22 C 1.53000 * 60.00152 * 252.51372 * 21 20 19 23 23 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 24 24 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 25 25 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 27 27 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 28 28 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 29 29 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 30 30 H 0.97001 * 120.00193 * 0.02562 * 18 16 14 31 31 H 1.09004 * 109.47650 * 300.00609 * 19 18 16 32 32 H 1.09000 * 109.47066 * 60.00480 * 19 18 16 33 33 H 1.08996 * 115.54974 * 29.33552 * 20 19 18 34 34 H 1.08998 * 117.49607 * 0.02562 * 21 20 19 35 35 H 1.08998 * 117.49322 * 145.01950 * 21 20 19 36 36 H 1.09003 * 117.49537 * 252.51329 * 22 21 20 37 37 H 1.08993 * 117.49812 * 107.49202 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3399 2.6320 0.4339 16 6 0.0396 3.3322 2.6441 17 8 0.8146 3.3642 3.5774 18 7 -1.1774 3.8996 2.7590 19 6 -1.5655 4.5536 4.0111 20 6 -2.9843 5.1102 3.8775 21 6 -3.1599 6.6272 3.9714 22 6 -3.6198 5.7312 5.1231 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8292 -0.0607 -2.9502 29 1 2.2720 2.1231 1.9978 30 1 -1.7968 3.8743 2.0129 31 1 -1.5351 3.8285 4.8245 32 1 -0.8738 5.3685 4.2249 33 1 -3.6394 4.5686 3.1951 34 1 -2.2645 7.2287 4.1279 35 1 -3.9305 7.0839 3.3504 36 1 -4.6930 5.5985 5.2599 37 1 -3.0271 5.7432 6.0377 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276408557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:25 Heat of formation + Delta-G solvation = -57.040309 kcal Electronic energy + Delta-G solvation = -18721.831553 eV Core-core repulsion = 15692.766128 eV Total energy + Delta-G solvation = -3029.065425 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.15846 -38.37906 -37.50591 -35.33295 -34.10348 -32.35176 -30.94932 -27.91009 -27.04289 -23.92715 -22.71946 -22.57917 -21.20781 -20.13913 -19.38536 -18.25039 -16.68368 -16.30414 -15.88485 -15.46042 -15.16044 -14.63443 -14.40258 -14.13773 -13.90185 -13.22863 -13.01179 -12.73101 -12.02474 -11.83444 -11.70214 -11.56545 -11.32758 -11.20277 -10.96342 -10.86501 -10.74053 -10.47798 -10.31761 -10.24820 -9.67830 -9.11569 -9.10154 -8.94649 -8.54669 -7.97781 -6.15818 -4.25148 1.96134 2.81812 3.23798 3.31938 3.35894 3.47876 3.82290 4.20829 4.35288 4.38549 4.60027 4.70091 4.96904 5.15572 5.21061 5.33015 5.40348 5.53060 5.58679 5.80486 5.87745 6.33416 6.34624 6.38965 6.57884 6.97596 7.06198 7.20838 7.30617 7.31519 7.55622 7.66892 7.81698 8.06906 8.11139 8.52291 8.67800 8.91709 9.41672 10.89641 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.039721 B = 0.004196 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.752994 B = 6672.164273 C = 7032.580973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.054 0.946 5 C -0.535 4.535 6 H 0.065 0.935 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.670 5.670 14 C 0.493 3.507 15 O -0.533 6.533 16 C 0.505 3.495 17 O -0.528 6.528 18 N -0.706 5.706 19 C 0.149 3.851 20 C -0.171 4.171 21 C -0.176 4.176 22 C -0.171 4.171 23 H 0.035 0.965 24 H 0.051 0.949 25 H 0.026 0.974 26 H 0.103 0.897 27 H 0.034 0.966 28 H 0.265 0.735 29 H 0.401 0.599 30 H 0.413 0.587 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.213 7.506 10.436 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.166 3.834 4 H 0.072 0.928 5 C -0.574 4.574 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.319 5.319 14 C 0.272 3.728 15 O -0.412 6.412 16 C 0.287 3.713 17 O -0.404 6.404 18 N -0.360 5.360 19 C 0.026 3.974 20 C -0.189 4.189 21 C -0.213 4.213 22 C -0.208 4.208 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.121 0.879 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.235 0.765 30 H 0.249 0.751 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.131 0.869 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.149 7.391 10.243 16.848 hybrid contribution 0.897 -0.032 -0.098 0.903 sum -10.252 7.359 10.145 16.192 Atomic orbital electron populations 1.21855 0.98326 0.98344 1.01064 1.21961 0.92649 0.99457 1.02706 1.18994 0.94729 0.89379 0.80288 0.92815 1.21264 0.90405 1.39190 1.06511 0.91731 1.24879 0.98815 0.94647 0.95268 1.69896 1.35142 1.37596 1.09329 0.86358 0.84590 0.77814 0.78175 1.19627 1.20825 1.20849 1.46447 1.13640 1.52742 1.19096 1.19786 0.84333 0.81329 0.87399 1.90718 1.51232 1.59556 1.39703 1.20810 0.82060 0.79217 0.89243 1.90716 1.51077 1.58116 1.40507 1.45743 1.16650 1.56597 1.17018 1.20937 0.93004 0.97053 0.86433 1.22468 0.97263 0.96461 1.02725 1.23101 1.03663 0.92537 1.02042 1.22956 1.01156 1.03795 0.92910 0.94567 0.92968 0.95535 0.87898 0.94698 0.92537 0.76468 0.75083 0.90795 0.91034 0.86891 0.88433 0.88539 0.88427 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.69 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.68 2.24 -69.08 -0.15 6.52 16 4 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -14.15 8.73 -34.44 -0.30 -14.45 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.32 11.29 55.43 0.63 -23.69 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.56 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.67 -14.52 5.01 -55.36 -0.28 -14.80 16 14 C 0.49 9.94 6.46 -11.59 -0.07 9.87 16 15 O -0.53 -11.57 13.61 5.50 0.07 -11.50 16 16 C 0.51 8.79 7.89 -11.58 -0.09 8.70 16 17 O -0.53 -10.10 16.48 5.49 0.09 -10.01 16 18 N -0.71 -9.56 5.55 -60.73 -0.34 -9.90 16 19 C 0.15 1.63 5.95 -4.04 -0.02 1.61 16 20 C -0.17 -1.43 5.85 -90.62 -0.53 -1.96 16 21 C -0.18 -1.31 10.18 -26.73 -0.27 -1.58 16 22 C -0.17 -1.19 10.25 -26.73 -0.27 -1.46 16 23 H 0.04 0.76 5.64 -51.93 -0.29 0.47 16 24 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.40 8.24 8.01 -40.82 -0.33 7.91 16 30 H 0.41 5.16 7.87 -40.82 -0.32 4.83 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.81 7.88 -51.93 -0.41 0.40 16 33 H 0.11 0.90 8.04 -51.93 -0.42 0.48 16 34 H 0.10 0.73 8.03 -51.93 -0.42 0.31 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 311.36 15.07 4.69 4.69 Total: -1.00 -29.21 311.36 -7.17 -36.38 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.37 Total: 10.26 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -1.65 Total: 3.00 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.01 Total: -48.39 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: 0.17 Total: -21.50 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.21 -7.17 -36.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276408557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.665 kcal (2) G-P(sol) polarization free energy of solvation -29.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds