Wall clock time and date at job start Sun Mar 29 2020 23:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47092 * 2 1 4 4 H 1.09003 * 109.47373 * 56.14408 * 3 2 1 5 5 C 1.50698 * 109.47201 * 176.14653 * 3 2 1 6 6 H 1.08004 * 119.99958 * 115.92009 * 5 3 2 7 7 C 1.37876 * 120.00046 * 295.92182 * 5 3 2 8 8 N 1.31513 * 120.00027 * 352.01613 * 7 5 3 9 9 Si 1.86808 * 119.99855 * 172.01675 * 7 5 3 10 10 H 1.48496 * 109.46938 * 265.09486 * 9 7 5 11 11 H 1.48497 * 109.47049 * 25.09991 * 9 7 5 12 12 H 1.48500 * 109.46639 * 145.09787 * 9 7 5 13 13 N 1.46504 * 109.46868 * 296.14347 * 3 2 1 14 14 C 1.34776 * 119.99715 * 85.00168 * 13 3 2 15 15 O 1.21284 * 120.00407 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00186 * 180.02562 * 14 13 3 17 17 C 1.52998 * 110.43559 * 57.45498 * 16 14 13 18 18 C 1.54632 * 110.48650 * 180.02562 * 16 14 13 19 19 C 1.54478 * 101.76673 * 93.88194 * 18 16 14 20 20 N 1.46762 * 105.47673 * 25.41070 * 19 18 16 21 21 C 1.34429 * 111.29943 * 342.98791 * 20 19 18 22 22 O 1.21277 * 124.94224 * 180.45066 * 21 20 19 23 23 H 1.09004 * 109.47045 * 60.00121 * 1 2 3 24 24 H 1.08998 * 109.47104 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47143 * 300.00001 * 1 2 3 26 26 H 1.08999 * 109.47143 * 239.99999 * 2 1 3 27 27 H 1.09003 * 109.47461 * 119.99227 * 2 1 3 28 28 H 0.97000 * 119.99815 * 180.02562 * 8 7 5 29 29 H 0.96995 * 120.00697 * 265.00039 * 13 3 2 30 30 H 1.09005 * 109.46935 * 60.70315 * 17 16 14 31 31 H 1.08995 * 109.46916 * 180.70153 * 17 16 14 32 32 H 1.09002 * 109.47306 * 300.70326 * 17 16 14 33 33 H 1.09009 * 110.96334 * 211.99664 * 18 16 14 34 34 H 1.08992 * 110.97095 * 335.71614 * 18 16 14 35 35 H 1.08992 * 110.24731 * 144.41505 * 19 18 16 36 36 H 1.09005 * 110.24262 * 266.41358 * 19 18 16 37 37 H 0.97001 * 124.35067 * 162.98614 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6213 1.9760 0.8534 5 6 3.5439 1.4436 0.0955 6 1 4.1364 1.8339 -0.7188 7 6 4.1635 0.9464 1.2223 8 7 3.4476 0.6172 2.2753 9 14 6.0199 0.7402 1.2534 10 1 6.3696 -0.6528 0.8761 11 1 6.6390 1.6847 0.2891 12 1 6.5266 1.0249 2.6200 13 7 1.6289 2.1058 -1.2400 14 6 0.4097 2.6733 -1.3283 15 8 -0.3474 2.6346 -0.3816 16 6 -0.0135 3.3551 -2.6040 17 6 0.0611 2.3802 -3.7808 18 6 -1.4435 3.9265 -2.4636 19 6 -1.1602 5.3801 -2.0242 20 7 0.1795 5.6902 -2.5372 21 6 0.8479 4.5710 -2.8653 22 8 1.9774 4.5404 -3.3059 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8901 28 1 3.8836 0.2677 3.0682 29 1 2.2341 2.1365 -1.9973 30 1 -0.6101 1.5405 -3.6001 31 1 -0.2359 2.8922 -4.6961 32 1 1.0823 2.0134 -3.8846 33 1 -1.9684 3.9029 -3.4187 34 1 -2.0048 3.3895 -1.6990 35 1 -1.8964 6.0559 -2.4592 36 1 -1.1744 5.4550 -0.9369 37 1 0.5367 6.5875 -2.6278 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602135607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:00 Heat of formation + Delta-G solvation = -84.194408 kcal Electronic energy + Delta-G solvation = -19988.005806 eV Core-core repulsion = 16957.762891 eV Total energy + Delta-G solvation = -3030.242915 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92108 -38.43025 -36.30328 -34.94971 -33.21296 -32.17300 -30.83289 -28.70388 -26.92759 -25.37372 -23.29396 -22.20484 -21.40619 -19.65931 -18.96904 -17.50661 -17.19375 -16.08551 -15.43248 -15.12503 -14.70112 -14.32236 -14.24724 -13.79280 -13.57925 -13.14136 -12.74057 -12.60508 -12.34241 -12.13727 -11.95856 -11.45364 -11.39575 -11.23539 -11.08025 -10.95655 -10.75653 -10.32568 -10.16827 -9.73326 -9.68601 -9.12980 -9.07172 -8.94245 -8.45804 -7.84371 -6.11712 -4.16820 2.56832 3.18781 3.27828 3.34851 3.38651 3.47092 4.03963 4.35235 4.41018 4.48596 4.81761 5.07444 5.21565 5.34301 5.37146 5.50683 5.72853 5.77005 5.89784 6.08424 6.16238 6.34404 6.39194 6.59394 6.77262 6.98565 6.99416 7.15781 7.31937 7.41186 7.62666 7.73790 7.86752 8.10331 8.27985 8.66734 8.80791 9.09382 9.48982 10.96306 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.025930 B = 0.006852 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.590829 B = 4085.167219 C = 4578.604256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.269 3.731 4 H 0.054 0.946 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.286 1.286 13 N -0.695 5.695 14 C 0.522 3.478 15 O -0.541 6.541 16 C -0.123 4.123 17 C -0.126 4.126 18 C -0.116 4.116 19 C 0.102 3.898 20 N -0.731 5.731 21 C 0.534 3.466 22 O -0.519 6.519 23 H 0.039 0.961 24 H 0.024 0.976 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.083 0.917 28 H 0.264 0.736 29 H 0.394 0.606 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 6.016 -10.082 15.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.211 1.211 13 N -0.342 5.342 14 C 0.305 3.695 15 O -0.420 6.420 16 C -0.130 4.130 17 C -0.184 4.184 18 C -0.154 4.154 19 C -0.023 4.023 20 N -0.387 5.387 21 C 0.318 3.682 22 O -0.394 6.394 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.227 0.773 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.758 5.758 -9.397 14.721 hybrid contribution 1.414 0.328 -0.267 1.476 sum -8.344 6.086 -9.664 14.144 Atomic orbital electron populations 1.21843 0.98099 0.98180 1.01373 1.21855 0.92890 0.99770 1.01505 1.18831 0.94225 0.88861 0.81362 0.92790 1.21238 0.90558 1.42263 1.03287 0.91954 1.24872 0.98562 0.95129 0.94916 1.69975 1.35623 1.42891 1.03418 0.86491 0.85049 0.78538 0.77439 1.20507 1.19754 1.21149 1.46498 1.14435 1.54508 1.18754 1.19433 0.83203 0.79589 0.87322 1.90655 1.52666 1.60560 1.38154 1.21700 0.97292 0.95938 0.98050 1.21641 1.03848 0.98030 0.94865 1.22655 0.94578 0.94603 1.03569 1.22100 0.83349 0.96821 1.00014 1.46132 1.17523 1.08849 1.66179 1.20395 0.85976 0.85468 0.76333 1.90758 1.17300 1.86376 1.44934 0.94153 0.95728 0.92944 0.94637 0.89818 0.92637 0.77312 0.90977 0.91686 0.90923 0.89776 0.87272 0.90286 0.90430 0.75169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.49 37.16 0.32 -2.64 16 2 C -0.12 -2.91 5.48 -26.73 -0.15 -3.06 16 3 C 0.27 6.86 2.13 -69.08 -0.15 6.71 16 4 H 0.05 1.59 7.56 -51.93 -0.39 1.20 16 5 C -0.54 -14.62 8.68 -34.44 -0.30 -14.92 16 6 H 0.06 1.68 7.73 -52.48 -0.41 1.28 16 7 C 0.07 1.89 5.19 -17.82 -0.09 1.79 16 8 N -0.88 -25.15 11.99 55.43 0.66 -24.49 16 9 Si 0.90 21.20 29.55 -169.99 -5.02 16.18 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.70 -15.06 4.88 -54.93 -0.27 -15.33 16 14 C 0.52 10.24 5.07 -10.99 -0.06 10.18 16 15 O -0.54 -11.83 12.60 5.55 0.07 -11.76 16 16 C -0.12 -1.84 0.75 -155.67 -0.12 -1.96 16 17 C -0.13 -1.61 8.30 37.16 0.31 -1.30 16 18 C -0.12 -1.33 6.02 -25.10 -0.15 -1.48 16 19 C 0.10 1.06 7.78 -3.12 -0.02 1.04 16 20 N -0.73 -9.12 6.24 -59.20 -0.37 -9.49 16 21 C 0.53 8.59 7.15 -10.86 -0.08 8.51 16 22 O -0.52 -10.03 17.87 5.56 0.10 -9.93 16 23 H 0.04 0.83 5.67 -51.93 -0.29 0.53 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 1.20 7.78 -51.93 -0.40 0.80 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 2.21 6.64 -51.93 -0.34 1.87 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 29 H 0.39 8.17 7.85 -40.82 -0.32 7.85 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.00 7.49 -51.93 -0.39 0.62 16 33 H 0.08 0.73 7.92 -51.92 -0.41 0.32 16 34 H 0.11 1.37 6.96 -51.93 -0.36 1.01 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.41 4.26 8.96 -40.82 -0.37 3.89 16 LS Contribution 301.24 15.07 4.54 4.54 Total: -1.00 -31.81 301.24 -6.13 -37.94 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.36 Total: 9.47 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -0.49 Total: 2.87 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.03 Total: -49.31 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.17 Total: -21.69 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.81 -6.13 -37.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602135607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.254 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds