Wall clock time and date at job start Sun Mar 29 2020 23:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46764 * 2 1 4 4 C 1.37101 * 119.99812 * 264.76898 * 3 2 1 5 5 H 1.07997 * 120.00087 * 138.85018 * 4 3 2 6 6 C 1.38951 * 119.99798 * 318.85499 * 4 3 2 7 7 N 1.31410 * 120.00325 * 341.82327 * 6 4 3 8 8 Si 1.86796 * 119.99727 * 161.82815 * 6 4 3 9 9 H 1.48496 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47230 * 119.99939 * 8 6 4 11 11 H 1.48502 * 109.47157 * 239.99628 * 8 6 4 12 12 C 1.34777 * 120.00074 * 84.77111 * 3 2 1 13 13 O 1.21288 * 119.99700 * 180.02562 * 12 3 2 14 14 C 1.50699 * 120.00077 * 359.97438 * 12 3 2 15 15 C 1.53000 * 109.47246 * 180.02562 * 14 12 3 16 16 N 1.46494 * 109.47192 * 179.97438 * 15 14 12 17 17 C 1.46768 * 124.34708 * 89.99850 * 16 15 14 18 18 C 1.54481 * 105.54779 * 197.07458 * 17 16 15 19 19 C 1.54621 * 101.76836 * 334.54641 * 18 17 16 20 20 C 1.34619 * 124.47152 * 270.02744 * 16 15 14 21 21 O 1.21281 * 124.90770 * 359.54906 * 20 16 15 22 22 H 1.09005 * 109.47357 * 300.00056 * 1 2 3 23 23 H 1.08997 * 109.47103 * 60.00182 * 1 2 3 24 24 H 1.09000 * 109.46623 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47287 * 240.00010 * 2 1 3 26 26 H 1.08997 * 109.47545 * 119.99516 * 2 1 3 27 27 H 0.96998 * 120.00336 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.46769 * 59.99963 * 14 12 3 29 29 H 1.09003 * 109.47104 * 300.00523 * 14 12 3 30 30 H 1.08998 * 109.46992 * 59.99972 * 15 14 12 31 31 H 1.08997 * 109.46799 * 300.00053 * 15 14 12 32 32 H 1.09005 * 110.24243 * 78.03444 * 17 16 15 33 33 H 1.08993 * 110.24953 * 316.12018 * 17 16 15 34 34 H 1.09004 * 110.96771 * 92.66342 * 18 17 16 35 35 H 1.09000 * 110.97270 * 216.42227 * 18 17 16 36 36 H 1.08997 * 110.48945 * 143.47564 * 19 18 17 37 37 H 1.09003 * 110.48341 * 266.12303 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3488 1.9915 -1.1824 5 1 2.0741 3.0218 -1.3536 6 6 3.0371 1.2842 -2.1606 7 7 3.6791 0.1819 -1.8451 8 14 3.0497 1.9004 -3.9239 9 1 2.2573 3.1529 -4.0163 10 1 4.4486 2.1670 -4.3451 11 1 2.4529 0.8710 -4.8123 12 6 2.1426 2.0521 1.1623 13 8 2.5464 3.1958 1.1622 14 6 1.7788 1.3816 2.4620 15 6 2.0097 2.3545 3.6200 16 7 1.6555 1.7028 4.8833 17 6 2.5928 0.9319 5.7087 18 6 1.7124 0.0951 6.6632 19 6 0.4233 0.9464 6.7309 20 6 0.4293 1.7321 5.4381 21 8 -0.5312 2.3052 4.9692 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 4.1593 -0.3120 -2.5280 28 1 2.4003 0.4969 2.6007 29 1 0.7292 1.0882 2.4381 30 1 1.3880 3.2389 3.4810 31 1 3.0591 2.6482 3.6440 32 1 3.2340 1.6041 6.2790 33 1 3.1971 0.2768 5.0814 34 1 1.5079 -0.8895 6.2427 35 1 2.1752 0.0093 7.6463 36 1 -0.4557 0.3041 6.7829 37 1 0.4558 1.6204 7.5870 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067991206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:56 Heat of formation + Delta-G solvation = -70.682814 kcal Electronic energy + Delta-G solvation = -19252.132852 eV Core-core repulsion = 16222.475844 eV Total energy + Delta-G solvation = -3029.657008 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26301 -38.51795 -36.30982 -35.03763 -33.45519 -32.01994 -29.61391 -29.36351 -27.57761 -25.39122 -23.45326 -22.16440 -21.87639 -19.30948 -18.69047 -16.96812 -16.64338 -16.45634 -15.43911 -15.39356 -14.94958 -14.29704 -14.21965 -13.75577 -13.48028 -13.26775 -12.94571 -12.75835 -12.67754 -12.24993 -11.88203 -11.65443 -11.57875 -11.45453 -11.14672 -11.05276 -10.89963 -10.74627 -10.32258 -10.26244 -10.05132 -9.67451 -8.92059 -8.70923 -8.30516 -7.40481 -6.30768 -3.98841 2.67439 3.11074 3.17395 3.27589 3.34628 3.94638 4.18821 4.31354 4.37284 4.67843 4.89202 4.97387 5.05348 5.33578 5.40394 5.44708 5.53981 5.59637 5.65403 5.76980 5.83405 5.87292 6.08067 6.12371 6.25903 6.37000 6.45026 6.55204 6.73214 6.89916 7.23269 7.27077 7.60299 8.27814 8.32318 8.53469 9.21437 9.42070 10.04093 10.74549 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.037490 B = 0.004912 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.683086 B = 5699.236567 C = 5745.267247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.105 3.895 3 N -0.441 5.441 4 C -0.307 4.307 5 H 0.088 0.912 6 C 0.038 3.962 7 N -0.873 5.873 8 Si 0.918 3.082 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.466 3.534 13 O -0.583 6.583 14 C -0.150 4.150 15 C 0.144 3.856 16 N -0.618 5.618 17 C 0.098 3.902 18 C -0.132 4.132 19 C -0.155 4.155 20 C 0.511 3.489 21 O -0.533 6.533 22 H 0.043 0.957 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.103 0.897 26 H 0.047 0.953 27 H 0.266 0.734 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.415 -5.337 14.187 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.020 4.020 3 N -0.161 5.161 4 C -0.435 4.435 5 H 0.106 0.894 6 C -0.166 4.166 7 N -0.511 5.511 8 Si 0.744 3.256 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.254 3.746 13 O -0.467 6.467 14 C -0.191 4.191 15 C 0.023 3.977 16 N -0.352 5.352 17 C -0.025 4.025 18 C -0.170 4.170 19 C -0.195 4.195 20 C 0.298 3.702 21 O -0.409 6.409 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.121 0.879 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.579 -4.571 13.742 14.711 hybrid contribution 0.164 -0.091 -0.907 0.926 sum -2.415 -4.662 12.836 13.868 Atomic orbital electron populations 1.22227 0.98207 1.00329 1.01656 1.21439 0.91617 0.85620 1.03289 1.43458 1.55994 1.11750 1.04862 1.19435 1.34590 0.98551 0.90927 0.89414 1.25420 0.94067 0.96545 1.00573 1.69932 1.29700 1.17643 1.33869 0.86013 0.78112 0.79048 0.82410 1.19166 1.20755 1.20647 1.20187 0.81866 0.87825 0.84726 1.90518 1.50494 1.18720 1.86991 1.21973 1.02868 0.99784 0.94503 1.21141 1.02125 0.94925 0.79507 1.48496 1.10796 1.53089 1.22852 1.22095 0.92538 0.94558 0.93304 1.22597 0.95074 0.98908 1.00380 1.22326 1.00164 0.99839 0.97188 1.20981 0.82506 0.80516 0.86157 1.90733 1.36786 1.45853 1.67571 0.93785 0.92387 0.93150 0.87913 0.93495 0.92375 0.90153 0.90114 0.89420 0.89678 0.91082 0.90134 0.89945 0.89316 0.88249 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 10.15 37.16 0.38 -2.75 16 2 C 0.10 2.31 5.41 -4.04 -0.02 2.28 16 3 N -0.44 -11.38 2.50 -114.81 -0.29 -11.67 16 4 C -0.31 -8.65 8.84 -14.93 -0.13 -8.78 16 5 H 0.09 2.59 7.82 -52.49 -0.41 2.18 16 6 C 0.04 1.02 4.95 -17.47 -0.09 0.93 16 7 N -0.87 -23.74 11.61 55.50 0.64 -23.10 16 8 Si 0.92 20.85 29.59 -169.99 -5.03 15.82 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 C 0.47 11.60 7.59 -10.99 -0.08 11.52 16 13 O -0.58 -16.43 15.89 5.55 0.09 -16.34 16 14 C -0.15 -2.87 4.63 -27.88 -0.13 -3.00 16 15 C 0.14 2.52 5.23 -4.04 -0.02 2.50 16 16 N -0.62 -8.71 2.94 -172.36 -0.51 -9.22 16 17 C 0.10 0.94 7.34 -3.12 -0.02 0.92 16 18 C -0.13 -0.94 7.18 -25.10 -0.18 -1.12 16 19 C -0.15 -1.44 6.86 -26.75 -0.18 -1.62 16 20 C 0.51 7.60 8.03 -10.77 -0.09 7.51 16 21 O -0.53 -10.39 17.60 5.56 0.10 -10.30 16 22 H 0.04 0.81 6.60 -51.93 -0.34 0.47 16 23 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.10 2.48 5.76 -51.93 -0.30 2.18 16 26 H 0.05 0.94 6.66 -51.93 -0.35 0.60 16 27 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.08 1.41 7.41 -51.93 -0.38 1.02 16 29 H 0.08 1.54 6.54 -51.93 -0.34 1.20 16 30 H 0.09 1.73 7.89 -51.93 -0.41 1.32 16 31 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 307.88 15.07 4.64 4.64 Total: -1.00 -33.89 307.88 -6.39 -40.29 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.47 Total: 1.48 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.57 Total: 8.39 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.15 Total: -43.98 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: 0.19 Total: -26.64 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.89 -6.39 -40.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067991206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.396 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds