Wall clock time and date at job start Sun Mar 29 2020 23:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46764 * 2 1 4 4 C 1.37101 * 119.99812 * 264.76898 * 3 2 1 5 5 H 1.07997 * 120.00087 * 138.85018 * 4 3 2 6 6 C 1.38951 * 119.99798 * 318.85499 * 4 3 2 7 7 N 1.31410 * 120.00325 * 341.82327 * 6 4 3 8 8 Si 1.86796 * 119.99727 * 161.82815 * 6 4 3 9 9 H 1.48496 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47230 * 119.99939 * 8 6 4 11 11 H 1.48502 * 109.47157 * 239.99628 * 8 6 4 12 12 C 1.34777 * 120.00074 * 84.77111 * 3 2 1 13 13 O 1.21288 * 119.99700 * 180.02562 * 12 3 2 14 14 C 1.50699 * 120.00077 * 359.97438 * 12 3 2 15 15 C 1.53000 * 109.47246 * 180.02562 * 14 12 3 16 16 N 1.46494 * 109.47192 * 179.97438 * 15 14 12 17 17 C 1.46768 * 124.34708 * 89.99850 * 16 15 14 18 18 C 1.54481 * 105.54779 * 197.07458 * 17 16 15 19 19 C 1.54621 * 101.76836 * 334.54641 * 18 17 16 20 20 C 1.34619 * 124.47152 * 270.02744 * 16 15 14 21 21 O 1.21281 * 124.90770 * 359.54906 * 20 16 15 22 22 H 1.09005 * 109.47357 * 300.00056 * 1 2 3 23 23 H 1.08997 * 109.47103 * 60.00182 * 1 2 3 24 24 H 1.09000 * 109.46623 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47287 * 240.00010 * 2 1 3 26 26 H 1.08997 * 109.47545 * 119.99516 * 2 1 3 27 27 H 0.96998 * 120.00336 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.46769 * 59.99963 * 14 12 3 29 29 H 1.09003 * 109.47104 * 300.00523 * 14 12 3 30 30 H 1.08998 * 109.46992 * 59.99972 * 15 14 12 31 31 H 1.08997 * 109.46799 * 300.00053 * 15 14 12 32 32 H 1.09005 * 110.24243 * 78.03444 * 17 16 15 33 33 H 1.08993 * 110.24953 * 316.12018 * 17 16 15 34 34 H 1.09004 * 110.96771 * 92.66342 * 18 17 16 35 35 H 1.09000 * 110.97270 * 216.42227 * 18 17 16 36 36 H 1.08997 * 110.48945 * 143.47564 * 19 18 17 37 37 H 1.09003 * 110.48341 * 266.12303 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3488 1.9915 -1.1824 5 1 2.0741 3.0218 -1.3536 6 6 3.0371 1.2842 -2.1606 7 7 3.6791 0.1819 -1.8451 8 14 3.0497 1.9004 -3.9239 9 1 2.2573 3.1529 -4.0163 10 1 4.4486 2.1670 -4.3451 11 1 2.4529 0.8710 -4.8123 12 6 2.1426 2.0521 1.1623 13 8 2.5464 3.1958 1.1622 14 6 1.7788 1.3816 2.4620 15 6 2.0097 2.3545 3.6200 16 7 1.6555 1.7028 4.8833 17 6 2.5928 0.9319 5.7087 18 6 1.7124 0.0951 6.6632 19 6 0.4233 0.9464 6.7309 20 6 0.4293 1.7321 5.4381 21 8 -0.5312 2.3052 4.9692 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 4.1593 -0.3120 -2.5280 28 1 2.4003 0.4969 2.6007 29 1 0.7292 1.0882 2.4381 30 1 1.3880 3.2389 3.4810 31 1 3.0591 2.6482 3.6440 32 1 3.2340 1.6041 6.2790 33 1 3.1971 0.2768 5.0814 34 1 1.5079 -0.8895 6.2427 35 1 2.1752 0.0093 7.6463 36 1 -0.4557 0.3041 6.7829 37 1 0.4558 1.6204 7.5870 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067991206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:55 Heat of formation + Delta-G solvation = -93.509606 kcal Electronic energy + Delta-G solvation = -19253.122696 eV Core-core repulsion = 16222.475844 eV Total energy + Delta-G solvation = -3030.646852 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.37801 -40.39843 -37.49366 -36.97298 -34.76125 -33.95000 -31.23844 -30.85795 -28.41826 -27.25308 -25.03789 -23.85310 -22.67076 -20.78145 -20.24448 -18.79920 -18.13674 -17.55661 -17.13187 -16.78038 -16.57864 -16.00394 -15.85365 -14.84172 -14.73984 -14.65785 -14.48739 -14.14213 -13.97839 -13.63477 -13.36437 -13.27588 -13.10419 -12.85368 -12.67792 -12.44232 -12.27915 -12.15022 -12.06760 -11.79386 -11.76729 -10.92004 -10.84664 -10.45252 -9.72560 -9.43480 -8.36366 -6.13158 1.35379 1.40107 1.53139 1.55860 1.98216 2.01604 2.30394 2.98420 3.11016 3.46424 3.68708 3.94331 3.99524 4.08035 4.12453 4.22978 4.29828 4.51841 4.55371 4.64382 4.70737 4.77051 4.84907 4.91813 4.93434 4.99294 5.14343 5.24059 5.27955 5.43352 5.49737 5.55355 6.20247 6.21969 6.51730 7.13638 7.16330 7.42587 8.03547 8.67800 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.037490 B = 0.004912 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.683086 B = 5699.236567 C = 5745.267247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.104 3.896 3 N -0.453 5.453 4 C -0.344 4.344 5 H 0.058 0.942 6 C 0.007 3.993 7 N -0.890 5.890 8 Si 0.982 3.018 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.262 1.262 12 C 0.450 3.550 13 O -0.629 6.629 14 C -0.129 4.129 15 C 0.153 3.847 16 N -0.619 5.619 17 C 0.088 3.912 18 C -0.116 4.116 19 C -0.143 4.143 20 C 0.494 3.506 21 O -0.593 6.593 22 H 0.045 0.955 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.274 0.726 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 -7.591 15.563 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.019 4.019 3 N -0.172 5.172 4 C -0.472 4.472 5 H 0.076 0.924 6 C -0.196 4.196 7 N -0.527 5.527 8 Si 0.805 3.195 9 H -0.198 1.198 10 H -0.202 1.202 11 H -0.187 1.187 12 C 0.239 3.761 13 O -0.516 6.516 14 C -0.170 4.170 15 C 0.030 3.970 16 N -0.352 5.352 17 C -0.034 4.034 18 C -0.153 4.153 19 C -0.183 4.183 20 C 0.285 3.715 21 O -0.474 6.474 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.143 0.857 36 H 0.129 0.871 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.231 -6.891 15.150 16.793 hybrid contribution 0.114 0.607 -1.322 1.459 sum -2.117 -6.284 13.828 15.336 Atomic orbital electron populations 1.22116 0.95743 1.02498 1.00943 1.21548 0.93593 0.83533 1.03223 1.43759 1.55876 1.13033 1.04566 1.19367 1.36743 0.98130 0.93005 0.92384 1.26135 0.92990 0.96556 1.03884 1.69978 1.29349 1.18089 1.35290 0.85073 0.78159 0.78634 0.77644 1.19812 1.20190 1.18692 1.21113 0.81076 0.87514 0.86359 1.90473 1.52463 1.20765 1.87893 1.21800 1.03139 1.00197 0.91836 1.20767 1.01414 0.93772 0.81047 1.48616 1.11900 1.52929 1.21777 1.22483 0.92457 0.94948 0.93480 1.22654 0.93067 0.98105 1.01491 1.22368 1.02018 0.99813 0.94109 1.22113 0.81655 0.80038 0.87737 1.90693 1.38729 1.48417 1.69511 0.93644 0.93944 0.89446 0.89938 0.91399 0.91613 0.87823 0.89881 0.92819 0.89520 0.89352 0.89461 0.89094 0.85741 0.87061 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.68 10.15 71.98 0.73 -4.95 16 2 C 0.10 4.55 5.41 86.38 0.47 5.02 16 3 N -0.45 -23.94 2.50 -635.53 -1.59 -25.53 16 4 C -0.34 -20.06 8.84 84.04 0.74 -19.31 16 5 H 0.06 3.64 7.82 -2.91 -0.02 3.62 16 6 C 0.01 0.39 4.95 84.93 0.42 0.81 16 7 N -0.89 -48.16 11.61 21.66 0.25 -47.90 16 8 Si 0.98 42.95 29.59 68.60 2.03 44.98 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 12 C 0.45 23.10 7.59 87.66 0.67 23.77 16 13 O -0.63 -37.23 15.89 -3.06 -0.05 -37.28 16 14 C -0.13 -4.93 4.63 29.85 0.14 -4.79 16 15 C 0.15 5.45 5.23 86.38 0.45 5.90 16 16 N -0.62 -16.79 2.94 -817.70 -2.40 -19.19 16 17 C 0.09 1.40 7.34 86.83 0.64 2.04 16 18 C -0.12 -1.13 7.18 31.65 0.23 -0.90 16 19 C -0.14 -2.20 6.86 30.58 0.21 -1.99 16 20 C 0.49 14.31 8.03 87.87 0.71 15.02 16 21 O -0.59 -23.71 17.60 -3.03 -0.05 -23.76 16 22 H 0.04 1.64 6.60 -2.38 -0.02 1.62 16 23 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.08 3.96 5.76 -2.39 -0.01 3.95 16 26 H 0.07 2.62 6.66 -2.39 -0.02 2.61 16 27 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 28 H 0.10 3.47 7.41 -2.38 -0.02 3.45 16 29 H 0.08 3.16 6.54 -2.39 -0.02 3.14 16 30 H 0.05 2.26 7.89 -2.39 -0.02 2.24 16 31 H 0.09 3.01 8.10 -2.39 -0.02 2.99 16 32 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -78.01 307.88 4.64 -73.37 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.06 Total: 14.72 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 5.40 Total: 20.60 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -3.74 Total: -92.63 kcal Atomic # 8 Polarization: -60.94 SS G_CDS: -0.10 Total: -61.04 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -78.01 4.64 -73.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067991206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.139 kcal (2) G-P(sol) polarization free energy of solvation -78.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds