Wall clock time and date at job start Sun Mar 29 2020 23:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46858 * 2 1 4 4 C 1.50703 * 109.47109 * 119.99901 * 2 1 3 5 5 H 1.07989 * 119.99917 * 85.87464 * 4 2 1 6 6 C 1.37877 * 119.99665 * 265.87433 * 4 2 1 7 7 N 1.31518 * 119.99718 * 177.64134 * 6 4 2 8 8 Si 1.86798 * 120.00409 * 357.63523 * 6 4 2 9 9 H 1.48496 * 109.47284 * 274.92510 * 8 6 4 10 10 H 1.48504 * 109.47089 * 34.92555 * 8 6 4 11 11 H 1.48500 * 109.46809 * 154.92189 * 8 6 4 12 12 N 1.46493 * 109.47181 * 240.00037 * 2 1 3 13 13 C 1.34777 * 120.00036 * 84.99862 * 12 2 1 14 14 O 1.21276 * 120.00272 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99939 * 179.97438 * 13 12 2 16 16 N 1.46504 * 109.47249 * 180.02562 * 15 13 12 17 17 C 1.45759 * 117.94536 * 269.74374 * 16 15 13 18 18 C 1.53101 * 110.38498 * 160.74341 * 17 16 15 19 19 C 1.53349 * 108.52962 * 51.11178 * 18 17 16 20 20 C 1.53076 * 108.42278 * 292.31063 * 19 18 17 21 21 C 1.33355 * 117.94547 * 90.00190 * 16 15 13 22 22 O 1.21284 * 118.24521 * 2.24614 * 21 16 15 23 23 H 1.08996 * 109.47554 * 56.13746 * 1 2 3 24 24 H 1.09000 * 109.47220 * 176.13458 * 1 2 3 25 25 H 1.09000 * 109.47341 * 296.13363 * 1 2 3 26 26 H 0.96999 * 119.99984 * 180.02562 * 7 6 4 27 27 H 0.96997 * 119.99861 * 264.99760 * 12 2 1 28 28 H 1.08993 * 109.47825 * 300.00212 * 15 13 12 29 29 H 1.08999 * 109.47071 * 60.00434 * 15 13 12 30 30 H 1.09001 * 109.29480 * 281.23059 * 17 16 15 31 31 H 1.08993 * 109.30411 * 40.60692 * 17 16 15 32 32 H 1.09001 * 109.80533 * 291.32734 * 18 17 16 33 33 H 1.08998 * 109.67851 * 170.82296 * 18 17 16 34 34 H 1.08997 * 109.67528 * 172.57728 * 19 18 17 35 35 H 1.08998 * 109.70322 * 52.06254 * 19 18 17 36 36 H 1.08996 * 109.40219 * 288.76614 * 20 19 18 37 37 H 1.09002 * 109.33052 * 168.98758 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.1489 -1.7840 1.2244 6 6 2.3431 0.0104 2.3640 7 7 2.7371 -0.6136 3.4526 8 14 2.2046 1.8732 2.3536 9 1 3.4567 2.4597 1.8119 10 1 1.0584 2.2796 1.5013 11 1 1.9884 2.3612 3.7394 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6499 -0.7285 -3.5874 16 7 2.6996 0.2130 -4.7088 17 6 1.5156 0.3367 -5.5498 18 6 1.5545 1.6502 -6.3355 19 6 2.9115 1.7556 -7.0418 20 6 3.9983 1.9296 -5.9780 21 6 3.8272 0.8991 -4.8992 22 8 4.7646 0.6787 -4.1619 23 1 -0.3634 0.5726 -0.8533 24 1 -0.3633 -1.0253 -0.0693 25 1 -0.3634 0.4526 0.9226 26 1 2.9554 -0.1065 4.2502 27 1 2.2490 -1.6317 -1.1525 28 1 3.6491 -1.1203 -3.3979 29 1 1.9777 -1.5508 -3.8325 30 1 1.4783 -0.5020 -6.2449 31 1 0.6246 0.3205 -4.9222 32 1 1.4305 2.4919 -5.6541 33 1 0.7550 1.6585 -7.0763 34 1 2.9113 2.6163 -7.7105 35 1 3.0998 0.8468 -7.6135 36 1 3.9224 2.9259 -5.5424 37 1 4.9782 1.8105 -6.4403 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171284973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:05 Heat of formation + Delta-G solvation = -80.903279 kcal Electronic energy + Delta-G solvation = -19352.881476 eV Core-core repulsion = 16322.781275 eV Total energy + Delta-G solvation = -3030.100201 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.57507 -38.60312 -36.42709 -34.93647 -33.91230 -32.33083 -30.17771 -29.66699 -27.36856 -25.28141 -24.45662 -22.55763 -21.00900 -19.58556 -18.63460 -17.57481 -16.67582 -16.47186 -16.19898 -15.31986 -15.15825 -14.43763 -14.22420 -14.10334 -13.80194 -13.49325 -13.26760 -12.85247 -12.52819 -12.37351 -12.03312 -11.78271 -11.42710 -11.33364 -11.13917 -11.12605 -11.08450 -10.81160 -10.53143 -9.86916 -9.62488 -9.46680 -9.16707 -8.71313 -8.48191 -8.06370 -6.20821 -4.24389 2.70472 2.99472 3.27087 3.32240 3.36649 3.43807 4.12298 4.35525 4.48484 4.56986 4.59093 4.67039 5.13704 5.20114 5.21301 5.30478 5.39142 5.48747 5.54669 5.61001 5.66638 5.71330 5.76850 6.02595 6.30842 6.35591 6.52678 6.68004 6.94583 7.18813 7.40923 7.50307 7.57494 8.14933 8.26962 8.59426 8.79488 9.00591 9.41448 10.91019 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.033278 B = 0.005339 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.202363 B = 5243.225651 C = 5362.765743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.232 3.768 3 H 0.048 0.952 4 C -0.530 4.530 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.890 5.890 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.261 1.261 11 H -0.286 1.286 12 N -0.703 5.703 13 C 0.488 3.512 14 O -0.553 6.553 15 C 0.084 3.916 16 N -0.584 5.584 17 C 0.117 3.883 18 C -0.136 4.136 19 C -0.122 4.122 20 C -0.132 4.132 21 C 0.520 3.480 22 O -0.551 6.551 23 H 0.027 0.973 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.268 0.732 27 H 0.393 0.607 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 1.232 -21.118 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.130 3.870 3 H 0.066 0.934 4 C -0.568 4.568 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.526 5.526 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.186 1.186 11 H -0.212 1.212 12 N -0.352 5.352 13 C 0.271 3.729 14 O -0.432 6.432 15 C -0.043 4.043 16 N -0.316 5.316 17 C -0.006 4.006 18 C -0.174 4.174 19 C -0.160 4.160 20 C -0.172 4.172 21 C 0.309 3.691 22 O -0.429 6.429 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.227 0.773 28 H 0.132 0.868 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.634 2.005 -20.570 20.834 hybrid contribution -0.027 0.493 0.277 0.566 sum -2.661 2.498 -20.293 20.618 Atomic orbital electron populations 1.22222 0.98670 1.00010 0.99620 1.19081 0.90763 0.94315 0.82865 0.93449 1.21008 1.45321 0.95788 0.94688 0.90294 1.24925 0.93538 0.98577 0.95268 1.69879 1.44216 1.36222 1.02300 0.86896 0.79889 0.85876 0.77226 1.19848 1.18563 1.21173 1.46569 1.64978 1.13891 1.09738 1.20944 0.78618 0.88005 0.85291 1.90621 1.51352 1.15987 1.85260 1.21441 1.04717 0.92129 0.85967 1.46837 1.13872 1.41911 1.28983 1.21415 0.87916 0.97841 0.93390 1.21899 0.97922 0.97903 0.99656 1.21659 0.94088 1.02824 0.97403 1.21629 1.01171 0.99135 0.95224 1.20096 0.81830 0.81665 0.85548 1.90736 1.39149 1.65812 1.47227 0.95387 0.93612 0.92724 0.92258 0.77326 0.86831 0.88030 0.91721 0.90510 0.90446 0.89915 0.90672 0.91199 0.88228 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.44 37.16 0.35 -2.88 16 2 C 0.23 5.68 2.16 -69.09 -0.15 5.53 16 3 H 0.05 1.29 4.89 -51.93 -0.25 1.03 16 4 C -0.53 -14.57 9.05 -34.44 -0.31 -14.88 16 5 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 6 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 7 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 8 Si 0.87 22.30 26.74 -169.99 -4.55 17.75 16 9 H -0.27 -7.10 7.11 56.52 0.40 -6.69 16 10 H -0.26 -6.53 6.87 56.52 0.39 -6.14 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 N -0.70 -14.49 5.07 -54.94 -0.28 -14.77 16 13 C 0.49 9.67 7.85 -10.99 -0.09 9.58 16 14 O -0.55 -13.00 16.08 5.56 0.09 -12.91 16 15 C 0.08 1.25 5.70 -5.19 -0.03 1.22 16 16 N -0.58 -8.20 2.30 -176.23 -0.41 -8.61 16 17 C 0.12 1.19 6.33 -4.39 -0.03 1.16 16 18 C -0.14 -1.15 6.03 -26.50 -0.16 -1.31 16 19 C -0.12 -0.94 6.03 -26.51 -0.16 -1.10 16 20 C -0.13 -1.44 6.03 -28.10 -0.17 -1.61 16 21 C 0.52 8.14 7.44 -11.87 -0.09 8.05 16 22 O -0.55 -11.10 16.18 5.55 0.09 -11.01 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 1.22 7.92 -51.93 -0.41 0.81 16 26 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.39 7.05 8.59 -40.82 -0.35 6.69 16 28 H 0.11 1.74 7.13 -51.93 -0.37 1.37 16 29 H 0.10 1.09 8.01 -51.93 -0.42 0.68 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 307.20 15.07 4.63 4.63 Total: -1.00 -35.68 307.20 -6.17 -41.85 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.60 Total: 3.03 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -0.93 Total: 5.97 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.09 Total: -49.32 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.18 Total: -23.92 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.55 Total: 17.75 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.68 -6.17 -41.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171284973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.054 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds