Wall clock time and date at job start Sun Mar 29 2020 23:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46858 * 2 1 4 4 C 1.50703 * 109.47109 * 119.99901 * 2 1 3 5 5 H 1.07989 * 119.99917 * 85.87464 * 4 2 1 6 6 C 1.37877 * 119.99665 * 265.87433 * 4 2 1 7 7 N 1.31518 * 119.99718 * 177.64134 * 6 4 2 8 8 Si 1.86798 * 120.00409 * 357.63523 * 6 4 2 9 9 H 1.48496 * 109.47284 * 274.92510 * 8 6 4 10 10 H 1.48504 * 109.47089 * 34.92555 * 8 6 4 11 11 H 1.48500 * 109.46809 * 154.92189 * 8 6 4 12 12 N 1.46493 * 109.47181 * 240.00037 * 2 1 3 13 13 C 1.34777 * 120.00036 * 84.99862 * 12 2 1 14 14 O 1.21276 * 120.00272 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99939 * 179.97438 * 13 12 2 16 16 N 1.46504 * 109.47249 * 180.02562 * 15 13 12 17 17 C 1.45759 * 117.94536 * 269.74374 * 16 15 13 18 18 C 1.53101 * 110.38498 * 160.74341 * 17 16 15 19 19 C 1.53349 * 108.52962 * 51.11178 * 18 17 16 20 20 C 1.53076 * 108.42278 * 292.31063 * 19 18 17 21 21 C 1.33355 * 117.94547 * 90.00190 * 16 15 13 22 22 O 1.21284 * 118.24521 * 2.24614 * 21 16 15 23 23 H 1.08996 * 109.47554 * 56.13746 * 1 2 3 24 24 H 1.09000 * 109.47220 * 176.13458 * 1 2 3 25 25 H 1.09000 * 109.47341 * 296.13363 * 1 2 3 26 26 H 0.96999 * 119.99984 * 180.02562 * 7 6 4 27 27 H 0.96997 * 119.99861 * 264.99760 * 12 2 1 28 28 H 1.08993 * 109.47825 * 300.00212 * 15 13 12 29 29 H 1.08999 * 109.47071 * 60.00434 * 15 13 12 30 30 H 1.09001 * 109.29480 * 281.23059 * 17 16 15 31 31 H 1.08993 * 109.30411 * 40.60692 * 17 16 15 32 32 H 1.09001 * 109.80533 * 291.32734 * 18 17 16 33 33 H 1.08998 * 109.67851 * 170.82296 * 18 17 16 34 34 H 1.08997 * 109.67528 * 172.57728 * 19 18 17 35 35 H 1.08998 * 109.70322 * 52.06254 * 19 18 17 36 36 H 1.08996 * 109.40219 * 288.76614 * 20 19 18 37 37 H 1.09002 * 109.33052 * 168.98758 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.1489 -1.7840 1.2244 6 6 2.3431 0.0104 2.3640 7 7 2.7371 -0.6136 3.4526 8 14 2.2046 1.8732 2.3536 9 1 3.4567 2.4597 1.8119 10 1 1.0584 2.2796 1.5013 11 1 1.9884 2.3612 3.7394 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6499 -0.7285 -3.5874 16 7 2.6996 0.2130 -4.7088 17 6 1.5156 0.3367 -5.5498 18 6 1.5545 1.6502 -6.3355 19 6 2.9115 1.7556 -7.0418 20 6 3.9983 1.9296 -5.9780 21 6 3.8272 0.8991 -4.8992 22 8 4.7646 0.6787 -4.1619 23 1 -0.3634 0.5726 -0.8533 24 1 -0.3633 -1.0253 -0.0693 25 1 -0.3634 0.4526 0.9226 26 1 2.9554 -0.1065 4.2502 27 1 2.2490 -1.6317 -1.1525 28 1 3.6491 -1.1203 -3.3979 29 1 1.9777 -1.5508 -3.8325 30 1 1.4783 -0.5020 -6.2449 31 1 0.6246 0.3205 -4.9222 32 1 1.4305 2.4919 -5.6541 33 1 0.7550 1.6585 -7.0763 34 1 2.9113 2.6163 -7.7105 35 1 3.0998 0.8468 -7.6135 36 1 3.9224 2.9259 -5.5424 37 1 4.9782 1.8105 -6.4403 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171284973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:04 Heat of formation + Delta-G solvation = -107.435537 kcal Electronic energy + Delta-G solvation = -19354.032001 eV Core-core repulsion = 16322.781275 eV Total energy + Delta-G solvation = -3031.250726 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74838 -40.18667 -37.50251 -36.73593 -34.96555 -34.40531 -31.89973 -30.60386 -28.63094 -27.34316 -25.32325 -23.64370 -22.57868 -21.33115 -19.62421 -19.38084 -17.97183 -17.84264 -17.56032 -16.97452 -16.47926 -15.89742 -15.73703 -15.10297 -15.02901 -14.71336 -14.53843 -14.29876 -14.22752 -14.09553 -13.48219 -13.13428 -12.97029 -12.84299 -12.68093 -12.43802 -12.21434 -11.91995 -11.84354 -11.80720 -11.25886 -11.03371 -10.90228 -10.73000 -9.84420 -9.72720 -8.42783 -6.48324 1.23552 1.28734 1.38749 1.50914 1.73555 1.95256 2.22713 2.57581 3.01565 3.60847 3.84157 3.90147 3.94553 3.98025 4.21360 4.39735 4.43372 4.53522 4.57762 4.65150 4.71498 4.79859 4.86272 4.95422 5.05007 5.07014 5.14658 5.30617 5.35304 5.40237 5.43554 5.71668 6.09193 6.43536 6.56362 6.85548 7.12291 7.17753 7.42905 8.72383 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.033278 B = 0.005339 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.202363 B = 5243.225651 C = 5362.765743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.234 3.766 3 H 0.020 0.980 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.034 3.966 7 N -0.929 5.929 8 Si 0.924 3.076 9 H -0.284 1.284 10 H -0.254 1.254 11 H -0.272 1.272 12 N -0.703 5.703 13 C 0.484 3.516 14 O -0.593 6.593 15 C 0.091 3.909 16 N -0.584 5.584 17 C 0.107 3.893 18 C -0.134 4.134 19 C -0.112 4.112 20 C -0.130 4.130 21 C 0.506 3.494 22 O -0.610 6.610 23 H 0.036 0.964 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.271 0.729 27 H 0.407 0.593 28 H 0.108 0.892 29 H 0.151 0.849 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 1.254 -23.930 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.130 3.870 3 H 0.038 0.962 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.167 4.167 7 N -0.568 5.568 8 Si 0.750 3.250 9 H -0.210 1.210 10 H -0.178 1.178 11 H -0.197 1.197 12 N -0.353 5.353 13 C 0.270 3.730 14 O -0.474 6.474 15 C -0.036 4.036 16 N -0.314 5.314 17 C -0.014 4.014 18 C -0.172 4.172 19 C -0.149 4.149 20 C -0.170 4.170 21 C 0.296 3.704 22 O -0.492 6.492 23 H 0.055 0.945 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.243 0.757 28 H 0.126 0.874 29 H 0.169 0.831 30 H 0.120 0.880 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.134 0.866 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.938 2.004 -23.422 23.836 hybrid contribution 0.358 0.430 1.102 1.236 sum -3.579 2.434 -22.320 22.736 Atomic orbital electron populations 1.22075 0.96574 1.01288 0.99653 1.18850 0.92280 0.92685 0.83161 0.96196 1.21221 1.44356 0.95091 0.95811 0.92209 1.25568 0.93795 1.02115 0.95205 1.69965 1.46076 1.37688 1.03043 0.86099 0.79426 0.81704 0.77799 1.21013 1.17845 1.19745 1.46341 1.65205 1.14537 1.09179 1.21816 0.77367 0.87621 0.86153 1.90599 1.52956 1.17860 1.85977 1.21459 1.05150 0.92878 0.84128 1.47095 1.14661 1.41048 1.28596 1.21787 0.85794 1.00309 0.93505 1.21933 0.99575 0.95947 0.99750 1.21663 0.92045 1.04777 0.96446 1.21695 1.03333 0.97061 0.94882 1.21029 0.81482 0.81938 0.85933 1.90700 1.41222 1.67698 1.49600 0.94484 0.91813 0.93409 0.91993 0.75747 0.87439 0.83148 0.88043 0.91273 0.92958 0.86625 0.88229 0.89512 0.88747 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.88 9.44 71.98 0.68 -5.20 16 2 C 0.23 11.41 2.16 44.25 0.10 11.50 16 3 H 0.02 1.09 4.89 -2.38 -0.01 1.08 16 4 C -0.53 -29.20 9.05 25.60 0.23 -28.97 16 5 H 0.06 3.48 8.06 -2.92 -0.02 3.46 16 6 C 0.03 1.95 5.47 84.65 0.46 2.41 16 7 N -0.93 -56.60 13.96 21.45 0.30 -56.30 16 8 Si 0.92 46.47 26.74 68.60 1.83 48.30 16 9 H -0.28 -14.66 7.11 99.48 0.71 -13.96 16 10 H -0.25 -12.39 6.87 99.48 0.68 -11.70 16 11 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 12 N -0.70 -28.53 5.07 -446.11 -2.26 -30.79 16 13 C 0.48 18.84 7.85 87.66 0.69 19.53 16 14 O -0.59 -27.79 16.08 -3.02 -0.05 -27.84 16 15 C 0.09 2.53 5.70 85.63 0.49 3.02 16 16 N -0.58 -15.33 2.30 -830.64 -1.91 -17.24 16 17 C 0.11 1.82 6.33 86.55 0.55 2.37 16 18 C -0.13 -1.84 6.03 30.75 0.19 -1.65 16 19 C -0.11 -1.33 6.03 30.74 0.19 -1.14 16 20 C -0.13 -2.65 6.03 29.71 0.18 -2.47 16 21 C 0.51 15.48 7.44 87.71 0.65 16.13 16 22 O -0.61 -25.02 16.18 -3.04 -0.05 -25.07 16 23 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.05 2.08 7.92 -2.39 -0.02 2.07 16 26 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 27 H 0.41 14.23 8.59 -92.71 -0.80 13.43 16 28 H 0.11 3.21 7.13 -2.39 -0.02 3.20 16 29 H 0.15 2.68 8.01 -2.39 -0.02 2.66 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 32 H 0.05 0.99 8.12 -2.39 -0.02 0.97 16 33 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.79 8.12 -2.39 -0.02 0.78 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -79.74 307.20 2.50 -77.24 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.25 Total: 16.18 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 4.40 Total: 15.53 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -3.88 Total: -104.34 kcal Atomic # 8 Polarization: -52.81 SS G_CDS: -0.10 Total: -52.91 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.83 Total: 48.30 kcal Total: -79.74 2.50 -77.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171284973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.197 kcal (2) G-P(sol) polarization free energy of solvation -79.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds