Wall clock time and date at job start Sun Mar 29 2020 23:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47047 * 2 1 4 4 C 1.50694 * 109.47341 * 120.00424 * 2 1 3 5 5 H 1.07996 * 120.00393 * 95.13284 * 4 2 1 6 6 C 1.37879 * 119.99873 * 275.12865 * 4 2 1 7 7 N 1.31516 * 119.99714 * 355.38067 * 6 4 2 8 8 Si 1.86800 * 119.99916 * 175.10654 * 6 4 2 9 9 H 1.48498 * 109.47054 * 90.00454 * 8 6 4 10 10 H 1.48504 * 109.47041 * 209.99969 * 8 6 4 11 11 H 1.48501 * 109.47308 * 329.99869 * 8 6 4 12 12 N 1.46507 * 109.46734 * 240.00452 * 2 1 3 13 13 C 1.34775 * 120.00257 * 84.99853 * 12 2 1 14 14 O 1.21288 * 119.99830 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00432 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.59921 * 95.56570 * 15 13 12 17 17 C 1.52987 * 109.60974 * 216.06137 * 15 13 12 18 18 C 1.51801 * 110.88397 * 33.31065 * 17 15 13 19 19 C 1.51796 * 113.82944 * 66.96617 * 18 17 15 20 20 C 1.53064 * 110.74195 * 293.21327 * 19 18 17 21 21 C 1.51429 * 108.49028 * 84.91605 * 20 19 18 22 22 O 1.21282 * 119.89066 * 108.74879 * 21 20 19 23 23 N 1.33365 * 120.22034 * 288.76399 * 21 20 19 24 24 H 1.08991 * 109.47413 * 55.00714 * 1 2 3 25 25 H 1.09003 * 109.46965 * 175.00972 * 1 2 3 26 26 H 1.08999 * 109.46918 * 295.00365 * 1 2 3 27 27 H 0.96997 * 120.00340 * 4.83728 * 7 6 4 28 28 H 0.96992 * 119.99770 * 264.99156 * 12 2 1 29 29 H 1.08996 * 109.19330 * 153.64850 * 17 15 13 30 30 H 1.08995 * 109.19607 * 272.92851 * 17 15 13 31 31 H 1.09004 * 108.59002 * 305.85262 * 18 17 15 32 32 H 1.09003 * 108.51685 * 188.02125 * 18 17 15 33 33 H 1.08996 * 109.22369 * 172.89256 * 19 18 17 34 34 H 1.09001 * 109.18625 * 53.51608 * 19 18 17 35 35 H 1.08994 * 109.63284 * 325.21651 * 20 19 18 36 36 H 1.08998 * 109.79744 * 204.71117 * 20 19 18 37 37 H 0.96997 * 119.79293 * 179.71744 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.2913 -1.7578 1.1813 6 6 2.1616 -0.0233 2.4187 7 7 1.9337 1.2713 2.4578 8 14 2.6528 -0.9327 3.9747 9 1 4.1323 -0.9333 4.1015 10 1 2.0553 -0.2553 5.1535 11 1 2.1611 -2.3323 3.9063 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0182 -2.3572 14 8 1.8581 1.1585 -2.4117 15 6 2.6497 -0.7283 -3.5876 16 1 1.8037 -1.0633 -4.1878 17 6 3.5217 0.2231 -4.4093 18 6 4.2801 1.1785 -3.5058 19 6 5.3271 0.5024 -2.6393 20 6 4.6669 -0.4186 -1.6104 21 6 4.4125 -1.7619 -2.2616 22 8 5.0739 -2.7255 -1.9378 23 7 3.4637 -1.8887 -3.1902 24 1 -0.3634 0.5893 -0.8418 25 1 -0.3633 -1.0238 -0.0894 26 1 -0.3633 0.4344 0.9314 27 1 1.6072 1.7304 1.6682 28 1 2.2491 -1.6316 -1.1528 29 1 4.2343 -0.3587 -4.9938 30 1 2.8877 0.7962 -5.0858 31 1 3.5652 1.6843 -2.8567 32 1 4.7729 1.9256 -4.1279 33 1 5.9082 1.2636 -2.1189 34 1 5.9914 -0.0853 -3.2731 35 1 3.7217 0.0150 -1.2840 36 1 5.3269 -0.5467 -0.7524 37 1 3.3087 -2.7511 -3.6063 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193949378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:19 Heat of formation + Delta-G solvation = -67.265029 kcal Electronic energy + Delta-G solvation = -20518.955245 eV Core-core repulsion = 17489.446443 eV Total energy + Delta-G solvation = -3029.508802 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.22744 -38.57935 -36.15426 -35.19276 -33.92571 -32.55369 -30.82058 -29.28018 -26.61598 -24.99312 -24.24520 -22.25853 -20.61503 -19.88664 -19.37963 -17.66604 -17.43272 -16.84258 -15.58763 -15.32062 -14.83129 -14.56809 -13.93892 -13.81147 -13.54755 -13.44327 -13.07433 -12.95442 -12.45167 -12.39306 -11.80073 -11.57192 -11.35905 -11.18330 -10.89080 -10.77668 -10.63641 -10.38295 -10.24807 -10.18052 -9.62603 -9.50481 -8.91766 -8.83779 -8.47938 -8.03190 -6.53063 -4.29111 2.82161 2.88117 3.32826 3.38775 3.40728 3.56605 3.77073 4.41962 4.67953 4.71820 4.84406 5.03959 5.19767 5.26243 5.34498 5.40247 5.69184 5.77480 5.87733 6.08954 6.14038 6.24905 6.36089 6.47349 6.50307 6.64808 6.69270 6.83747 6.96404 7.14188 7.27410 7.37271 7.64588 8.19677 8.33538 8.38188 8.66894 8.73145 9.43919 10.85206 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.023623 B = 0.008122 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.007119 B = 3446.684969 C = 3862.768627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.243 3.757 3 H 0.055 0.945 4 C -0.612 4.612 5 H 0.055 0.945 6 C 0.030 3.970 7 N -0.900 5.900 8 Si 1.072 2.928 9 H -0.285 1.285 10 H -0.283 1.283 11 H -0.287 1.287 12 N -0.703 5.703 13 C 0.499 3.501 14 O -0.538 6.538 15 C 0.119 3.881 16 H 0.119 0.881 17 C -0.112 4.112 18 C -0.156 4.156 19 C -0.106 4.106 20 C -0.181 4.181 21 C 0.527 3.473 22 O -0.549 6.549 23 N -0.725 5.725 24 H 0.026 0.974 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.273 0.727 28 H 0.392 0.608 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.133 0.867 36 H 0.097 0.903 37 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 -2.973 -12.479 12.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.142 3.858 3 H 0.072 0.928 4 C -0.650 4.650 5 H 0.074 0.926 6 C -0.176 4.176 7 N -0.535 5.535 8 Si 0.899 3.101 9 H -0.212 1.212 10 H -0.208 1.208 11 H -0.213 1.213 12 N -0.352 5.352 13 C 0.284 3.716 14 O -0.417 6.417 15 C 0.011 3.989 16 H 0.137 0.863 17 C -0.151 4.151 18 C -0.193 4.193 19 C -0.144 4.144 20 C -0.221 4.221 21 C 0.315 3.685 22 O -0.427 6.427 23 N -0.380 5.380 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.227 0.773 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.151 0.849 36 H 0.116 0.884 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.330 -2.205 -10.597 11.072 hybrid contribution -0.407 -1.133 -1.881 2.234 sum 1.924 -3.339 -12.478 13.060 Atomic orbital electron populations 1.22180 0.99046 0.99422 0.99844 1.18987 0.90460 0.94782 0.81586 0.92768 1.21967 1.49956 0.98288 0.94812 0.92644 1.25810 0.94271 0.95847 1.01698 1.70761 1.40844 1.08177 1.33687 0.83502 0.76773 0.74706 0.75100 1.21192 1.20842 1.21297 1.47003 1.63919 1.14085 1.10194 1.20371 0.78430 0.87757 0.85009 1.90625 1.51130 1.15174 1.84777 1.21649 0.94653 0.87114 0.95511 0.86321 1.21513 0.98491 0.97354 0.97700 1.21657 0.99376 0.98708 0.99539 1.21158 0.97867 0.98456 0.96928 1.22872 1.07225 0.92729 0.99290 1.20750 0.78234 0.91337 0.78147 1.90719 1.48146 1.41026 1.62766 1.46012 1.36935 1.12566 1.42524 0.95530 0.94325 0.92422 0.91501 0.77321 0.91013 0.90063 0.87708 0.91998 0.90838 0.92560 0.84948 0.88447 0.76330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.47 37.16 0.35 -2.90 16 2 C 0.24 5.76 1.96 -69.08 -0.14 5.62 16 3 H 0.05 1.45 6.11 -51.93 -0.32 1.13 16 4 C -0.61 -15.92 8.51 -34.44 -0.29 -16.22 16 5 H 0.06 1.45 7.78 -52.49 -0.41 1.04 16 6 C 0.03 0.82 5.46 -17.82 -0.10 0.72 16 7 N -0.90 -25.82 13.63 55.43 0.76 -25.07 16 8 Si 1.07 24.31 29.91 -169.99 -5.08 19.23 16 9 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 12 N -0.70 -13.73 3.03 -54.93 -0.17 -13.89 16 13 C 0.50 8.74 4.15 -10.99 -0.05 8.70 16 14 O -0.54 -10.94 13.75 5.55 0.08 -10.86 16 15 C 0.12 1.51 3.80 -68.71 -0.26 1.25 16 16 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 17 C -0.11 -1.30 5.34 -27.35 -0.15 -1.45 16 18 C -0.16 -2.15 5.16 -27.95 -0.14 -2.30 16 19 C -0.11 -1.55 5.67 -27.31 -0.15 -1.70 16 20 C -0.18 -3.18 5.34 -27.49 -0.15 -3.33 16 21 C 0.53 8.96 5.60 -11.25 -0.06 8.90 16 22 O -0.55 -11.15 17.92 5.56 0.10 -11.05 16 23 N -0.72 -9.46 4.59 -54.56 -0.25 -9.71 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.27 7.88 6.66 -40.82 -0.27 7.61 16 28 H 0.39 7.40 6.78 -40.82 -0.28 7.12 16 29 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 1.79 4.77 -51.93 -0.25 1.54 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.77 7.86 -51.93 -0.41 0.36 16 35 H 0.13 2.62 3.12 -51.93 -0.16 2.46 16 36 H 0.10 1.82 8.13 -51.93 -0.42 1.40 16 37 H 0.40 4.29 8.91 -40.82 -0.36 3.93 16 LS Contribution 289.76 15.07 4.37 4.37 Total: -1.00 -30.67 289.76 -6.39 -37.06 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -5.05 Total: 12.63 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.14 Total: -2.70 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.34 Total: -48.67 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.18 Total: -21.91 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.23 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.67 -6.39 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193949378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.206 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds