Wall clock time and date at job start Sun Mar 29 2020 23:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47304 * 2 1 4 4 C 1.34777 * 119.99854 * 89.99731 * 3 2 1 5 5 O 1.21274 * 120.00135 * 180.27973 * 4 3 2 6 6 C 1.50706 * 119.99766 * 0.02562 * 4 3 2 7 7 C 1.52999 * 109.46573 * 179.97438 * 6 4 3 8 8 C 1.50706 * 109.46953 * 179.97438 * 7 6 4 9 9 H 1.07999 * 119.99816 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00344 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99769 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00300 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46819 * 59.99744 * 12 10 8 14 14 H 1.48494 * 109.47285 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47196 * 300.00241 * 12 10 8 16 16 C 1.46496 * 119.99880 * 270.00471 * 3 2 1 17 17 H 1.08999 * 110.43793 * 0.69782 * 16 3 2 18 18 C 1.54634 * 110.48214 * 238.15442 * 16 3 2 19 19 C 1.54693 * 101.66682 * 216.60425 * 18 16 3 20 20 N 1.46760 * 105.53490 * 25.26464 * 19 18 16 21 21 C 1.34421 * 111.30195 * 343.07325 * 20 19 18 22 22 O 1.21282 * 124.94569 * 180.37451 * 21 20 19 23 23 H 1.08994 * 109.47070 * 299.99586 * 1 2 3 24 24 H 1.08996 * 109.47306 * 59.99842 * 1 2 3 25 25 H 1.09007 * 109.46888 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46783 * 240.00151 * 2 1 3 27 27 H 1.08996 * 109.47306 * 120.00158 * 2 1 3 28 28 H 1.09000 * 109.47161 * 299.99737 * 6 4 3 29 29 H 1.09001 * 109.46740 * 59.99879 * 6 4 3 30 30 H 1.09000 * 109.47486 * 299.99934 * 7 6 4 31 31 H 1.09001 * 109.47362 * 60.00657 * 7 6 4 32 32 H 0.97000 * 120.00540 * 180.02562 * 11 10 8 33 33 H 1.08996 * 110.97076 * 334.64024 * 18 16 3 34 34 H 1.09004 * 110.96599 * 98.40884 * 18 16 3 35 35 H 1.08993 * 110.14046 * 266.28290 * 19 18 16 36 36 H 1.09004 * 110.36223 * 144.36039 * 19 18 16 37 37 H 0.97005 * 124.35369 * 163.05421 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0166 1.1672 5 8 2.6424 3.1616 1.1673 6 6 1.9922 1.3059 2.4723 7 6 2.3241 2.2431 3.6352 8 6 2.0728 1.5327 4.9404 9 1 1.7128 0.5145 4.9403 10 6 2.3025 2.1827 6.1344 11 7 2.7413 3.4224 6.1345 12 14 1.9903 1.3024 7.7522 13 1 2.8484 0.0929 7.8311 14 1 2.3125 2.2119 8.8809 15 1 0.5624 0.9021 7.8304 16 6 2.2625 2.0718 -1.2687 17 1 2.0193 1.4215 -2.1090 18 6 3.7334 2.5407 -1.3553 19 6 3.5874 3.8953 -2.0880 20 7 2.2250 4.3556 -1.7952 21 6 1.4575 3.3508 -1.3387 22 8 0.2899 3.4546 -1.0277 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.9444 1.0114 2.5302 29 1 2.6228 0.4186 2.5298 30 1 3.3721 2.5373 3.5772 31 1 1.6939 3.1306 3.5779 32 1 2.9032 3.8796 6.9745 33 1 4.1578 2.6794 -0.3609 34 1 4.3320 1.8415 -1.9393 35 1 3.7163 3.7571 -3.1614 36 1 4.3169 4.6116 -1.7100 37 1 1.9177 5.2679 -1.9153 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291531811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:27 Heat of formation + Delta-G solvation = -74.814041 kcal Electronic energy + Delta-G solvation = -19546.026395 eV Core-core repulsion = 16516.190243 eV Total energy + Delta-G solvation = -3029.836152 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.77100 -38.62291 -36.18615 -35.54634 -33.48030 -31.63843 -30.64667 -29.37365 -27.24471 -25.42615 -23.25193 -22.33876 -21.59209 -20.35005 -18.24714 -17.33420 -16.99694 -16.38510 -15.93869 -15.44692 -14.84860 -14.45457 -14.21323 -13.79853 -13.59901 -13.45460 -13.21892 -12.74316 -12.66204 -12.37123 -12.13314 -11.84631 -11.58602 -11.33506 -11.10325 -10.95951 -10.85159 -10.58368 -9.93493 -9.88534 -9.59720 -9.16104 -9.06288 -8.90298 -8.41455 -8.28413 -5.93261 -3.97554 2.56453 3.19121 3.29018 3.36441 3.41005 3.42871 3.51695 4.39539 4.49111 4.50825 4.76945 4.93717 5.03149 5.11033 5.34628 5.41455 5.41623 5.48892 5.52792 5.72906 5.82307 5.94433 6.04935 6.23718 6.27218 6.39790 6.68799 6.87210 6.93437 7.08771 7.69304 7.76818 7.89644 8.10064 8.37434 8.41334 8.73099 9.10541 9.65724 11.17762 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.028241 B = 0.005456 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.227519 B = 5130.310138 C = 5597.550080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.110 3.890 3 N -0.610 5.610 4 C 0.514 3.486 5 O -0.524 6.524 6 C -0.126 4.126 7 C 0.038 3.962 8 C -0.526 4.526 9 H 0.055 0.945 10 C 0.058 3.942 11 N -0.891 5.891 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.117 3.883 17 H 0.117 0.883 18 C -0.145 4.145 19 C 0.110 3.890 20 N -0.727 5.727 21 C 0.521 3.479 22 O -0.524 6.524 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.022 0.978 31 H 0.023 0.977 32 H 0.261 0.739 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 -5.687 -19.074 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.013 4.013 3 N -0.346 5.346 4 C 0.305 3.695 5 O -0.399 6.399 6 C -0.166 4.166 7 C 0.001 3.999 8 C -0.565 4.565 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.529 5.529 12 Si 0.721 3.279 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C 0.009 3.991 17 H 0.134 0.866 18 C -0.184 4.184 19 C -0.016 4.016 20 N -0.383 5.383 21 C 0.305 3.695 22 O -0.399 6.399 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 1.540 -4.988 -18.741 19.454 hybrid contribution -0.279 -0.031 0.788 0.837 sum 1.260 -5.019 -17.953 18.684 Atomic orbital electron populations 1.22220 0.95799 1.01743 1.03311 1.21589 0.94728 0.81817 1.03196 1.48068 1.67912 1.14349 1.04241 1.21624 0.75583 0.86910 0.85414 1.90652 1.44454 1.17691 1.87055 1.21909 1.02298 1.00744 0.91656 1.18895 0.97851 0.93822 0.89373 1.21179 1.44887 0.99382 0.91004 0.92670 1.25018 0.95265 0.94862 0.99193 1.69989 1.45304 1.10972 1.26653 0.86653 0.78683 0.79407 0.83193 1.20252 1.21304 1.20237 1.21546 0.95200 0.93366 0.89013 0.86551 1.23073 0.95773 0.95931 1.03638 1.21977 0.83957 0.96533 0.99093 1.45965 1.12746 1.12022 1.67559 1.20946 0.86461 0.86815 0.75302 1.90728 1.15915 1.84823 1.48462 0.91743 0.92382 0.91812 0.90820 0.89415 0.90125 0.90267 0.95914 0.95897 0.92931 0.88076 0.89354 0.91368 0.90204 0.75285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.11 1.26 5.91 -4.04 -0.02 1.23 16 3 N -0.61 -9.22 2.50 -166.12 -0.42 -9.64 16 4 C 0.51 10.27 6.91 -10.98 -0.08 10.19 16 5 O -0.52 -12.24 13.30 5.56 0.07 -12.17 16 6 C -0.13 -2.66 4.19 -27.88 -0.12 -2.78 16 7 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 8 C -0.53 -15.15 9.11 -34.44 -0.31 -15.47 16 9 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 10 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 12 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.12 1.52 3.41 -67.94 -0.23 1.29 16 17 H 0.12 1.12 7.86 -51.93 -0.41 0.71 16 18 C -0.15 -1.60 6.44 -24.98 -0.16 -1.76 16 19 C 0.11 1.05 7.79 -3.01 -0.02 1.02 16 20 N -0.73 -9.34 6.24 -59.09 -0.37 -9.71 16 21 C 0.52 8.48 6.52 -10.86 -0.07 8.41 16 22 O -0.52 -10.80 18.02 5.56 0.10 -10.70 16 23 H 0.06 0.94 7.22 -51.93 -0.38 0.56 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.61 7.95 -51.93 -0.41 0.20 16 27 H 0.09 0.98 6.44 -51.93 -0.33 0.65 16 28 H 0.08 1.62 7.19 -51.93 -0.37 1.25 16 29 H 0.08 1.49 7.40 -51.93 -0.38 1.10 16 30 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.10 1.47 6.23 -51.93 -0.32 1.15 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.41 4.70 8.96 -40.82 -0.37 4.34 16 LS Contribution 306.64 15.07 4.62 4.62 Total: -1.00 -37.27 306.64 -6.60 -43.87 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.47 Total: 0.91 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -0.85 Total: 3.01 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.05 Total: -46.45 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.17 Total: -22.86 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -37.27 -6.60 -43.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291531811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.943 kcal (2) G-P(sol) polarization free energy of solvation -37.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds