Wall clock time and date at job start Sun Mar 29 2020 23:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.69592 * 2 1 4 4 C 1.53337 * 109.67385 * 239.48312 * 2 1 3 5 5 C 1.52916 * 108.67361 * 172.73485 * 4 2 1 6 6 N 1.45755 * 110.49186 * 50.75078 * 5 4 2 7 7 C 1.33356 * 124.10311 * 341.21270 * 6 5 4 8 8 O 1.21278 * 118.24707 * 181.94166 * 7 6 5 9 9 C 1.50165 * 123.51899 * 1.65368 * 7 6 5 10 10 H 1.08999 * 109.54019 * 222.65674 * 9 7 6 11 11 N 1.46501 * 109.12452 * 102.90655 * 9 7 6 12 12 C 1.34783 * 119.99788 * 84.66984 * 11 9 7 13 13 O 1.21279 * 120.00081 * 359.97438 * 12 11 9 14 14 C 1.50696 * 119.99719 * 179.97438 * 12 11 9 15 15 C 1.52999 * 109.47294 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47658 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99568 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00251 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99769 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99920 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47448 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47074 * 120.00256 * 20 18 16 23 23 H 1.48504 * 109.46988 * 239.99816 * 20 18 16 24 24 H 1.09003 * 109.46619 * 180.52038 * 1 2 3 25 25 H 1.09001 * 109.46718 * 300.51532 * 1 2 3 26 26 H 1.08992 * 109.47071 * 60.51809 * 1 2 3 27 27 H 1.09006 * 109.60302 * 52.97850 * 4 2 1 28 28 H 1.09000 * 109.60365 * 292.49216 * 4 2 1 29 29 H 1.09000 * 109.30245 * 290.43987 * 5 4 2 30 30 H 1.09009 * 109.30096 * 171.06590 * 5 4 2 31 31 H 0.97001 * 117.94686 * 160.92028 * 6 5 4 32 32 H 0.96998 * 120.00233 * 264.65919 * 11 9 7 33 33 H 1.09006 * 109.47168 * 299.99619 * 14 12 11 34 34 H 1.09001 * 109.47341 * 59.99600 * 14 12 11 35 35 H 1.09006 * 109.46765 * 299.99943 * 15 14 12 36 36 H 1.09001 * 109.47190 * 59.99585 * 15 14 12 37 37 H 0.97001 * 119.99795 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0463 -0.7332 -1.2439 5 6 3.5643 -0.5638 -1.3173 6 7 4.1795 -0.9196 -0.0447 7 6 3.5199 -0.9844 1.1125 8 8 4.1454 -1.2571 2.1151 9 6 2.0454 -0.7318 1.2417 10 1 1.8559 -0.1228 2.1257 11 7 1.3487 -2.0136 1.3753 12 6 1.2346 -2.5956 2.5856 13 8 1.7090 -2.0584 3.5640 14 6 0.5174 -3.9139 2.7231 15 6 0.5305 -4.3511 4.1892 16 6 -0.1872 -5.6691 4.3269 17 1 -0.6107 -6.1468 3.4558 18 6 -0.3031 -6.2649 5.5648 19 7 0.2122 -5.6829 6.6256 20 14 -1.1921 -7.8990 5.7352 21 1 -1.6770 -8.3401 4.4028 22 1 -0.2589 -8.9153 6.2844 23 1 -2.3477 -7.7403 6.6543 24 1 -0.3633 -1.0277 0.0093 25 1 -0.3633 0.5218 0.8854 26 1 -0.3633 0.5057 -0.8945 27 1 1.5872 -0.3074 -2.1362 28 1 1.7995 -1.7925 -1.1727 29 1 3.8000 0.4738 -1.5537 30 1 3.9612 -1.2080 -2.1020 31 1 5.1273 -1.1262 -0.0400 32 1 0.9694 -2.4434 0.5928 33 1 -0.5132 -3.8038 2.3857 34 1 1.0203 -4.6662 2.1154 35 1 1.5613 -4.4614 4.5263 36 1 0.0279 -3.5989 4.7972 37 1 0.1304 -6.1019 7.4966 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291532510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:12 Heat of formation + Delta-G solvation = -89.125932 kcal Electronic energy + Delta-G solvation = -19140.562971 eV Core-core repulsion = 16110.106209 eV Total energy + Delta-G solvation = -3030.456762 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.84719 -38.60964 -37.04675 -34.90767 -33.39450 -32.55118 -30.92086 -29.36635 -27.74989 -25.50056 -23.82355 -21.85834 -21.63133 -19.83837 -19.05441 -17.41615 -16.83595 -16.54912 -15.91265 -15.77532 -15.21418 -14.73478 -14.40799 -14.26228 -13.79318 -13.52997 -13.29428 -12.85773 -12.71599 -12.19415 -12.11260 -12.07466 -11.53852 -11.20072 -11.10818 -10.93987 -10.91354 -10.54404 -10.07829 -9.90838 -9.60892 -9.18971 -9.11617 -8.95572 -8.73400 -8.27817 -5.91424 -3.95921 2.51603 3.08068 3.35402 3.39124 3.42189 3.45438 3.68648 4.27299 4.33045 4.36873 4.50528 4.51433 4.93056 5.03944 5.13674 5.33537 5.37873 5.41804 5.43369 5.51371 5.65377 5.70969 5.89311 6.01860 6.25991 6.27381 6.61673 6.68923 6.92896 7.22174 7.79300 7.84905 7.92565 8.12954 8.23923 8.43320 8.83979 9.13122 9.67349 11.19585 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.035744 B = 0.004441 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.156286 B = 6303.314023 C = 6569.948042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.111 3.889 6 N -0.725 5.725 7 C 0.501 3.499 8 O -0.523 6.523 9 C 0.142 3.858 10 H 0.116 0.884 11 N -0.730 5.730 12 C 0.506 3.494 13 O -0.510 6.510 14 C -0.127 4.127 15 C 0.036 3.964 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.397 0.603 32 H 0.398 0.602 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.443 12.402 -21.555 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.108 0.892 4 C -0.173 4.173 5 C -0.013 4.013 6 N -0.380 5.380 7 C 0.285 3.715 8 O -0.396 6.396 9 C 0.033 3.967 10 H 0.134 0.866 11 N -0.388 5.388 12 C 0.294 3.706 13 O -0.382 6.382 14 C -0.167 4.167 15 C -0.002 4.002 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.232 0.768 32 H 0.233 0.767 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.894 12.676 -20.039 23.888 hybrid contribution -0.185 -1.163 -0.419 1.250 sum 2.708 11.513 -20.458 23.631 Atomic orbital electron populations 1.21780 0.93336 1.02835 1.02285 1.21603 0.97515 0.99885 0.93277 0.89231 1.21994 0.94500 1.01898 0.98886 1.21342 0.93814 1.00678 0.85477 1.45571 1.13260 1.71431 1.07746 1.20783 0.90913 0.77004 0.82775 1.90848 1.67715 1.45848 1.35159 1.20815 0.87406 0.87968 1.00496 0.86584 1.46173 1.59339 1.22349 1.10969 1.21670 0.79340 0.87702 0.81842 1.90727 1.45914 1.64211 1.37317 1.21852 0.99149 0.91188 1.04464 1.18914 0.98276 0.95827 0.87144 1.21249 1.35987 1.05633 0.93569 0.92589 1.25029 0.95753 0.97622 0.95999 1.70018 1.45015 1.38755 0.98948 0.86541 0.79451 0.83962 0.78025 1.19782 1.21039 1.21035 0.91872 0.91909 0.92142 0.89338 0.90763 0.91697 0.90634 0.76822 0.76676 0.90219 0.90392 0.95731 0.95757 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.93 37.16 0.33 -0.73 16 2 C -0.10 -0.82 2.58 -90.41 -0.23 -1.05 16 3 H 0.09 0.62 8.13 -51.93 -0.42 0.20 16 4 C -0.13 -0.78 5.28 -26.60 -0.14 -0.92 16 5 C 0.11 0.65 7.17 -4.49 -0.03 0.62 16 6 N -0.73 -7.32 5.45 -61.39 -0.33 -7.66 16 7 C 0.50 7.47 7.22 -11.88 -0.09 7.38 16 8 O -0.52 -10.91 17.34 5.52 0.10 -10.81 16 9 C 0.14 1.87 2.29 -69.31 -0.16 1.71 16 10 H 0.12 1.81 7.58 -51.93 -0.39 1.41 16 11 N -0.73 -10.43 4.18 -55.15 -0.23 -10.66 16 12 C 0.51 10.22 7.77 -10.98 -0.09 10.14 16 13 O -0.51 -12.88 15.20 5.52 0.08 -12.80 16 14 C -0.13 -2.65 5.64 -27.89 -0.16 -2.80 16 15 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 16 C -0.53 -15.24 9.11 -34.44 -0.31 -15.56 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -28.06 13.29 55.43 0.74 -27.32 16 20 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 24 H 0.06 0.48 6.76 -51.93 -0.35 0.13 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.47 6.95 -51.93 -0.36 0.11 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.32 8.14 -51.92 -0.42 -0.11 16 31 H 0.40 3.75 8.80 -40.82 -0.36 3.39 16 32 H 0.40 4.32 6.56 -40.82 -0.27 4.05 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.02 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 306.04 15.07 4.61 4.61 Total: -1.00 -38.69 306.04 -6.64 -45.33 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.50 Total: 1.04 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -1.09 Total: 1.28 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.17 Total: -45.64 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.18 Total: -23.61 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -38.69 -6.64 -45.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291532510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.796 kcal (2) G-P(sol) polarization free energy of solvation -38.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds